메뉴 건너뛰기




Volumn 23, Issue 6, 2006, Pages 1324-1338

The chloroplast genome sequence of Chara vulgaris sheds new light into the closest green algal relatives of land plants

Author keywords

Charophycean green algae; Chloroplast genome evolution; Genome rearrangements; Introns; Phylogenomics; Streptophyta

Indexed keywords

PLANT DNA;

EID: 33646890404     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msk018     Document Type: Article
Times cited : (175)

References (78)
  • 1
    • 0033920569 scopus 로고    scopus 로고
    • Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA
    • Adachi, J., P. J. Waddell, W. Martin, and M. Hasegawa. 2000. Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA. J. Mol. Evol. 50:348-358.
    • (2000) J. Mol. Evol. , vol.50 , pp. 348-358
    • Adachi, J.1    Waddell, P.J.2    Martin, W.3    Hasegawa, M.4
  • 3
    • 0025025422 scopus 로고
    • Different fates of the chloroplast tufA gene following its transfer to the nucleus in green algae
    • USA
    • Baldauf, S. L., J. R. Manhart, and J. D. Palmer. 1990. Different fates of the chloroplast tufA gene following its transfer to the nucleus in green algae. Proc. Natl. Acad. Sci. USA 87:5317-5321.
    • (1990) Proc. Natl. Acad. Sci. , vol.87 , pp. 5317-5321
    • Baldauf, S.L.1    Manhart, J.R.2    Palmer, J.D.3
  • 4
    • 0037819441 scopus 로고    scopus 로고
    • Widespread horizontal transfer of mitochondrial genes in flowering plants
    • Bergthorsson, U., K. L. Adams, B. Thomason, and J. D. Palmer. 2003. Widespread horizontal transfer of mitochondrial genes in flowering plants. Nature 424:197-201.
    • (2003) Nature , vol.424 , pp. 197-201
    • Bergthorsson, U.1    Adams, K.L.2    Thomason, B.3    Palmer, J.D.4
  • 5
    • 11144228905 scopus 로고    scopus 로고
    • Massive horizontal transfer of mitochondrial genes from diverse land plant donors to the basal angiosperm Amborella
    • USA
    • Bergthorsson, U., A. O. Richardson, G. J. Young, L. R. Goertzen, and J. D. Palmer. 2004. Massive horizontal transfer of mitochondrial genes from diverse land plant donors to the basal angiosperm Amborella. Proc. Natl. Acad. Sci. USA 101:17747-17752.
    • (2004) Proc. Natl. Acad. Sci. , vol.101 , pp. 17747-17752
    • Bergthorsson, U.1    Richardson, A.O.2    Young, G.J.3    Goertzen, L.R.4    Palmer, J.D.5
  • 6
    • 0031764595 scopus 로고    scopus 로고
    • Actin phylogeny identifies Mesostigma viride as a flagellate ancestor of the land plants
    • Bhattacharya, D., K. Weber, S. S. An, and W. Berning-Koch. 1998. Actin phylogeny identifies Mesostigma viride as a flagellate ancestor of the land plants. J. Mol. Evol. 47:544-550.
    • (1998) J. Mol. Evol. , vol.47 , pp. 544-550
    • Bhattacharya, D.1    Weber, K.2    An, S.S.3    Berning-Koch, W.4
  • 8
    • 3843132934 scopus 로고    scopus 로고
    • The reversal median problem
    • Caprara, A. 2003. The reversal median problem. INFORMS J. Comput. 15:93-113.
    • (2003) INFORMS J. Comput. , vol.15 , pp. 93-113
    • Caprara, A.1
  • 9
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved bloks from multiple alignments for their use in phylogenetic analysis
    • Castresana, J. 2000. Selection of conserved bloks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 17:540-542.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 540-542
    • Castresana, J.1
  • 10
    • 0036232883 scopus 로고    scopus 로고
    • Green algae and land plants - An answer at last?
    • Chapman, R. L., and D. A. Waters. 2002. Green algae and land plants - an answer at last? J. Phycol. 38:237-240.
    • (2002) J. Phycol. , vol.38 , pp. 237-240
    • Chapman, R.L.1    Waters, D.A.2
  • 11
    • 4444302046 scopus 로고    scopus 로고
    • GenAlyzer: Interactive visualization of sequence similarities between entire genomes
    • Choudhuri, J. V., C. Schleiermacher, S. Kurtz, and R. Giegerich. 2004. GenAlyzer: interactive visualization of sequence similarities between entire genomes. Bioinformatics 20:1964-1965.
    • (2004) Bioinformatics , vol.20 , pp. 1964-1965
    • Choudhuri, J.V.1    Schleiermacher, C.2    Kurtz, S.3    Giegerich, R.4
  • 12
    • 0036919547 scopus 로고    scopus 로고
    • Molecular and morphological data identify a cryptic species complex in endophytic members of the genus Coleochaete Bréb. (Charophyta: Coleochaetaceae)
    • Cimino, M. T., and C. F. Delwiche. 2002. Molecular and morphological data identify a cryptic species complex in endophytic members of the genus Coleochaete Bréb. (Charophyta: Coleochaetaceae). J. Phycol. 38:1213-1221.
    • (2002) J. Phycol. , vol.38 , pp. 1213-1221
    • Cimino, M.T.1    Delwiche, C.F.2
  • 13
    • 0027321537 scopus 로고
    • The single group-I intron in the chloroplast rrnL gene of Chlamydomonas humicola encodes a site-specific endonuclease (I-ChuI)
    • Côté, V., J.-P. Mercier, C. Lemieux, and M. Tunnel. 1993. The single group-I intron in the chloroplast rrnL gene of Chlamydomonas humicola encodes a site-specific endonuclease (I-ChuI). Gene 129:69-76.
    • (1993) Gene , vol.129 , pp. 69-76
    • Côté, V.1    Mercier, J.-P.2    Lemieux, C.3    Tunnel, M.4
  • 14
    • 17744394753 scopus 로고    scopus 로고
    • Phylogenomics and the reconstruction of the tree of life
    • Delsuc, F., H. Brinkmann, and H. Philippe. 2005. Phylogenomics and the reconstruction of the tree of life. Nat. Rev. Genet. 6:361-375.
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 361-375
    • Delsuc, F.1    Brinkmann, H.2    Philippe, H.3
  • 15
    • 0036232864 scopus 로고    scopus 로고
    • Phylogeny of the genus Coleochaete (Coleochaetales, Charophyta) and related taxa inferred by analysis of the chloroplast gene rbcL
    • Delwiche, C. F., K. G. Karol, M. T. Cimino, and K. J. Sytsma. 2002. Phylogeny of the genus Coleochaete (Coleochaetales, Charophyta) and related taxa inferred by analysis of the chloroplast gene rbcL. J. Phycol. 38:394-403.
    • (2002) J. Phycol. , vol.38 , pp. 394-403
    • Delwiche, C.F.1    Karol, K.G.2    Cimino, M.T.3    Sytsma, K.J.4
  • 16
    • 84959795073 scopus 로고
    • Phylogenetic analysis under Dollo's Law
    • Farris, J. S. 1977. Phylogenetic analysis under Dollo's Law. Syst. Zool. 26:77-88.
    • (1977) Syst. Zool. , vol.26 , pp. 77-88
    • Farris, J.S.1
  • 17
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein, J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27:401-410.
    • (1978) Syst. Zool. , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 18
    • 0003437299 scopus 로고
    • Distributed by the author, Department of Genetics, University of Washington, Seattle
    • _. 1995. PHYLIP (phylogeny inference package). Version 3.5. Distributed by the author, Department of Genetics, University of Washington, Seattle.
    • (1995) PHYLIP (Phylogeny Inference Package). Version 3.5
  • 19
    • 23944470414 scopus 로고    scopus 로고
    • Evidence for the most basal split in land plants dividing bryophyte and tracheophyte lineages
    • Goremykin, V. V., and F. H. Hellwig. 2005. Evidence for the most basal split in land plants dividing bryophyte and tracheophyte lineages. Plant Syst. Evol. 254:93-103.
    • (2005) Plant Syst. Evol. , vol.254 , pp. 93-103
    • Goremykin, V.V.1    Hellwig, F.H.2
  • 20
    • 23944524609 scopus 로고    scopus 로고
    • Analysis of Acorus calamus chloroplast genome and its phylogenetic implications
    • Goremykin, V. V., B. Holland, K. I. Hirsch-Ernst, and F. H. Hellwig. 2005. Analysis of Acorus calamus chloroplast genome and its phylogenetic implications. Mol. Biol. Evol. 22:1813-1822.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1813-1822
    • Goremykin, V.V.1    Holland, B.2    Hirsch-Ernst, K.I.3    Hellwig, F.H.4
  • 21
    • 0034712758 scopus 로고    scopus 로고
    • The origin of plants: Body plan changes contributing to a major evolutionary radiation
    • USA
    • Graham, L. E., M. E. Cook, and J. S. Busse. 2000. The origin of plants: body plan changes contributing to a major evolutionary radiation. Proc. Natl. Acad. Sci. USA 97:4535-4540.
    • (2000) Proc. Natl. Acad. Sci. , vol.97 , pp. 4535-4540
    • Graham, L.E.1    Cook, M.E.2    Busse, J.S.3
  • 22
    • 0029856519 scopus 로고    scopus 로고
    • Bias-corrected paralinear and LogDet distances and tests of molecular clocks and phylogenies under nonstationary nucleotide frequencies
    • Gu, X., and W. H. Li. 1996. Bias-corrected paralinear and LogDet distances and tests of molecular clocks and phylogenies under nonstationary nucleotide frequencies. Mol. Biol. Evol. 13:1375-1383.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 1375-1383
    • Gu, X.1    Li, W.H.2
  • 23
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon, S., and O. Gascuel. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52:696-704.
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 24
  • 25
    • 0030885968 scopus 로고    scopus 로고
    • The origin and early evolution of plants on land
    • Kenrick, P., and P. R. Crane. 1997. The origin and early evolution of plants on land. Nature 389:33-39.
    • (1997) Nature , vol.389 , pp. 33-39
    • Kenrick, P.1    Crane, P.R.2
  • 26
    • 7244221755 scopus 로고    scopus 로고
    • Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous
    • Kolaczkowski, B., and J. W. Thornton. 2004. Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous. Nature 431:980-984.
    • (2004) Nature , vol.431 , pp. 980-984
    • Kolaczkowski, B.1    Thornton, J.W.2
  • 27
    • 0037440006 scopus 로고    scopus 로고
    • The complete nucleotide sequence of the hornwort (Anthoceros formosae) chloroplast genome: Insight into the earliest land plants
    • Kugita, M., A. Kaneko, Y. Yamamoto, Y. Takeya, T. Matsumoto, and K. Yoshinaga. 2003. The complete nucleotide sequence of the hornwort (Anthoceros formosae) chloroplast genome: insight into the earliest land plants. Nucleic Acids Res. 31:716-721.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 716-721
    • Kugita, M.1    Kaneko, A.2    Yamamoto, Y.3    Takeya, Y.4    Matsumoto, T.5    Yoshinaga, K.6
  • 28
    • 0028181246 scopus 로고
    • Reconstructing evolutionary trees from DNA and protein sequences: Paralinear distances
    • USA
    • Lake, J. A. 1994. Reconstructing evolutionary trees from DNA and protein sequences: paralinear distances. Proc. Natl. Acad. Sci. USA 91:1455-1459.
    • (1994) Proc. Natl. Acad. Sci. , vol.91 , pp. 1455-1459
    • Lake, J.A.1
  • 30
    • 0034628462 scopus 로고    scopus 로고
    • Ancestral chloroplast genome in Mesostigma viride reveals an early branch of green plant evolution
    • Lemieux, C., C. Otis, and M. Turmel. 2000. Ancestral chloroplast genome in Mesostigma viride reveals an early branch of green plant evolution. Nature 403:649-652.
    • (2000) Nature , vol.403 , pp. 649-652
    • Lemieux, C.1    Otis, C.2    Turmel, M.3
  • 31
    • 17644368841 scopus 로고    scopus 로고
    • Green algae and the origin of land plants
    • Lewis, L. A., and R. M. McCourt. 2004. Green algae and the origin of land plants. Am. J. Bot. 91:1535-1556.
    • (2004) Am. J. Bot. , vol.91 , pp. 1535-1556
    • Lewis, L.A.1    McCourt, R.M.2
  • 32
    • 0028361182 scopus 로고
    • Recovering evolutionary trees under a more realistic model of sequence evolution
    • Lockhart, P. J., M. A. Steel, M. D. Hendy, and D. Penny. 1994. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11:605-612.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 605-612
    • Lockhart, P.J.1    Steel, M.A.2    Hendy, M.D.3    Penny, D.4
  • 33
    • 0036134757 scopus 로고    scopus 로고
    • Heterotachy, an important process of protein evolution
    • Lopez, P., D. Casane, and H. Philippe. 2002. Heterotachy, an important process of protein evolution. Mol. Biol. Evol. 19:1-7.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 1-7
    • Lopez, P.1    Casane, D.2    Philippe, H.3
  • 34
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T. M., and S. R. Eddy. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 36
    • 0029863292 scopus 로고    scopus 로고
    • RNA editing in bryophytes and a molecular phylogeny of land plants
    • Malek, O., K. Lattig, R. Hiesel, A. Brennicke, and V. Knoop. 1996. RNA editing in bryophytes and a molecular phylogeny of land plants. EMBO J. 15:1403-1411.
    • (1996) EMBO J. , vol.15 , pp. 1403-1411
    • Malek, O.1    Lattig, K.2    Hiesel, R.3    Brennicke, A.4    Knoop, V.5
  • 37
    • 84986799927 scopus 로고
    • Unique chloroplast genome in Spirogyra maxima (Chlorophyta) revealed by physical and gene mapping
    • Manhart, J. R., R. W. Hoshaw, and J. D. Palmer. 1990. Unique chloroplast genome in Spirogyra maxima (Chlorophyta) revealed by physical and gene mapping. J. Phycol. 26:490-494.
    • (1990) J. Phycol. , vol.26 , pp. 490-494
    • Manhart, J.R.1    Hoshaw, R.W.2    Palmer, J.D.3
  • 38
    • 0033381389 scopus 로고    scopus 로고
    • Mesostigmatophyceae, a new class of streptophyte green algae revealed by SSU rRNA sequence comparisons
    • Marin, B., and M. Melkonian. 1999. Mesostigmatophyceae, a new class of streptophyte green algae revealed by SSU rRNA sequence comparisons. Protist 150:399-417.
    • (1999) Protist , vol.150 , pp. 399-417
    • Marin, B.1    Melkonian, M.2
  • 39
    • 18144368560 scopus 로고    scopus 로고
    • Chloroplast genome phylogenetics: Why we need independent approaches to plant molecular evolution
    • Martin, W., O. Deusch, N. Stawski, N. Grunheit, and V. Goremykin. 2005. Chloroplast genome phylogenetics: why we need independent approaches to plant molecular evolution. Trends Plant Sci. 10:203-209.
    • (2005) Trends Plant Sci. , vol.10 , pp. 203-209
    • Martin, W.1    Deusch, O.2    Stawski, N.3    Grunheit, N.4    Goremykin, V.5
  • 40
    • 0037126071 scopus 로고    scopus 로고
    • Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
    • USA
    • Martin, W., T. Rujan, E. Richly, A. Hansen, S. Cornelsen, T. Lins, D. Leister, B. Stoebe, M. Hasegawa, and D. Penny. 2002. Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc. Natl. Acad. Sci. USA 99:12246-12251.
    • (2002) Proc. Natl. Acad. Sci. , vol.99 , pp. 12246-12251
    • Martin, W.1    Rujan, T.2    Richly, E.3    Hansen, A.4    Cornelsen, S.5    Lins, T.6    Leister, D.7    Stoebe, B.8    Hasegawa, M.9    Penny, D.10
  • 41
    • 0002980248 scopus 로고
    • Classification of the green algae: A concept based on comparative cytology
    • D. E. G. Irvine, and D. M. John, eds. Academic Press, London
    • Mattox, K. R., and K. D. Stewart. 1984. Classification of the green algae: a concept based on comparative cytology. Pp. 29-72 in D. E. G. Irvine, and D. M. John, eds. The systematics of the green algae. Academic Press, London.
    • (1984) The Systematics of the Green Algae , pp. 29-72
    • Mattox, K.R.1    Stewart, K.D.2
  • 43
    • 0024428420 scopus 로고
    • Comparative and functional anatomy of group II catalytic introns - A review
    • Michel, F., K. Umesono, and H. Ozeki. 1989. Comparative and functional anatomy of group II catalytic introns - a review. Gene 82:5-30.
    • (1989) Gene , vol.82 , pp. 5-30
    • Michel, F.1    Umesono, K.2    Ozeki, H.3
  • 44
    • 0025678737 scopus 로고
    • Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
    • Michel, F., and E. Westhof. 1990. Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J. Mol. Biol. 216:585-610.
    • (1990) J. Mol. Biol. , vol.216 , pp. 585-610
    • Michel, F.1    Westhof, E.2
  • 46
    • 4944236760 scopus 로고    scopus 로고
    • Chloroplast phylogeny indicates that bryophytes are monophyletic
    • Nishiyama, T., P. G. Wolf, M. Kugita et al. (12 co-authors). 2004. Chloroplast phylogeny indicates that bryophytes are monophyletic. Mol. Biol. Evol. 21:1813-1819.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1813-1819
    • Nishiyama, T.1    Wolf, P.G.2    Kugita, M.3
  • 47
    • 0022546644 scopus 로고
    • Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA
    • Ohyama, K., H. Fukuzawa, T. Kohchi et al. (13 co-authors). 1986. Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA. Nature 322:572-574.
    • (1986) Nature , vol.322 , pp. 572-574
    • Ohyama, K.1    Fukuzawa, H.2    Kohchi, T.3
  • 48
    • 0001856419 scopus 로고
    • Plastid chromosomes: Structure and evolution
    • L. Bogorad, and K. Vasil, eds. Academic Press, San Diego, Calif.
    • Palmer, J. D. 1991. Plastid chromosomes: structure and evolution. Pp. 5-53 in L. Bogorad, and K. Vasil, eds. The molecular biology of plastids. Academic Press, San Diego, Calif.
    • (1991) The Molecular Biology of Plastids , pp. 5-53
    • Palmer, J.D.1
  • 49
    • 0042672742 scopus 로고    scopus 로고
    • Origin, evolution, and metabolic role of a novel glycolytic GAPDH enzyme recruited by land plant plastids
    • Petersen, J., H. Brinkmann, and R. Cerff. 2003. Origin, evolution, and metabolic role of a novel glycolytic GAPDH enzyme recruited by land plant plastids. J. Mol. Evol. 57:16-26.
    • (2003) J. Mol. Evol. , vol.57 , pp. 16-26
    • Petersen, J.1    Brinkmann, H.2    Cerff, R.3
  • 50
    • 17744386162 scopus 로고    scopus 로고
    • Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia
    • Philippe, H., N. Lartillot, and H. Brinkmann. 2005. Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia. Mol. Biol. Evol. 22:1246-1253.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1246-1253
    • Philippe, H.1    Lartillot, N.2    Brinkmann, H.3
  • 51
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada, D., and K. A. Crandall. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 52
    • 0032996560 scopus 로고    scopus 로고
    • Phylogeny of early land plants: Insights from genes and genomes
    • Qiu, Y. L., and J. D. Palmer. 1999. Phylogeny of early land plants: insights from genes and genomes. Trends Plant Sci. 4:26-30.
    • (1999) Trends Plant Sci. , vol.4 , pp. 26-30
    • Qiu, Y.L.1    Palmer, J.D.2
  • 53
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • Rice, P., I. Longden, and A. Bleasby. 2000. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 16:276-277.
    • (2000) Trends Genet. , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 54
    • 0034129663 scopus 로고    scopus 로고
    • RRTree: Relative-rate tests between groups of sequences on a phylogenetic tree
    • Robinson-Rechavi, M., and D. Huchon. 2000. RRTree: relative-rate tests between groups of sequences on a phylogenetic tree. Bioinformatics 16:296-297.
    • (2000) Bioinformatics , vol.16 , pp. 296-297
    • Robinson-Rechavi, M.1    Huchon, D.2
  • 56
    • 17844384302 scopus 로고    scopus 로고
    • Phylogeny and diversification of bryophytes
    • Shaw, J., and K. Renzaglia. 2004. Phylogeny and diversification of bryophytes. Am. J. Bot. 91:1557-1581.
    • (2004) Am. J. Bot. , vol.91 , pp. 1557-1581
    • Shaw, J.1    Renzaglia, K.2
  • 57
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira, H., and M. Hasegawa. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16:1114-1116.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 58
    • 4644350604 scopus 로고    scopus 로고
    • Genome-scale data, angiosperm relationships, and "ending incongruence": A cautionary tale in phylogenetics
    • Soltis, D. E., V. A. Albert, V. Savolainen et al. (11 co-authors). 2004. Genome-scale data, angiosperm relationships, and "ending incongruence": a cautionary tale in phylogenetics. Trends Plant Sci. 9:477-483.
    • (2004) Trends Plant Sci. , vol.9 , pp. 477-483
    • Soltis, D.E.1    Albert, V.A.2    Savolainen, V.3
  • 59
    • 17744400517 scopus 로고    scopus 로고
    • Likelihood, parsimony, and heterogeneous evolution
    • Spencer, M., E. Susko, and A. J. Roger. 2005. Likelihood, parsimony, and heterogeneous evolution. Mol. Biol. Evol. 22:1161-1164.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1161-1164
    • Spencer, M.1    Susko, E.2    Roger, A.J.3
  • 60
    • 0001174620 scopus 로고
    • Did multicellular plants invade the land?
    • Stebbins, G. L., and G. J. C. Hill. 1980. Did multicellular plants invade the land? Am. Nat. 115:342-353.
    • (1980) Am. Nat. , vol.115 , pp. 342-353
    • Stebbins, G.L.1    Hill, G.J.C.2
  • 61
    • 43949153645 scopus 로고
    • Recovering a tree from the leaf colorations it generates under a Markov model
    • Steel, M. 1994. Recovering a tree from the leaf colorations it generates under a Markov model. Appl. Math. Lett. 7:19-23.
    • (1994) Appl. Math. Lett. , vol.7 , pp. 19-23
    • Steel, M.1
  • 62
    • 0034350429 scopus 로고    scopus 로고
    • Invariable sites models and their use in phylogeny reconstruction
    • Steel, M., D. Huson, and P. J. Lockhart. 2000. Invariable sites models and their use in phylogeny reconstruction. Syst. Biol. 49:225-232.
    • (2000) Syst. Biol. , vol.49 , pp. 225-232
    • Steel, M.1    Huson, D.2    Lockhart, P.J.3
  • 63
    • 0027180533 scopus 로고
    • Confidence in evolutionary trees from biological sequence data
    • Steel, M. A., P. J. Lockhart, and D. Penny. 1993. Confidence in evolutionary trees from biological sequence data. Nature 364:440-442.
    • (1993) Nature , vol.364 , pp. 440-442
    • Steel, M.A.1    Lockhart, P.J.2    Penny, D.3
  • 64
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies
    • Strimmer, K., and A. von Haeseler. 1996. Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13:964-969.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 65
    • 0344875209 scopus 로고    scopus 로고
    • Complete chloroplast DNA sequence of the moss Physcomitrella patens: Evidence for the loss and relocation of rpoA from the chloroplast to the nucleus
    • Sugiura, C., Y. Kobayashi, S. Aoki, C. Sugita, and M. Sugita. 2003. Complete chloroplast DNA sequence of the moss Physcomitrella patens: evidence for the loss and relocation of rpoA from the chloroplast to the nucleus. Nucleic Acids Res. 31:5324-5331.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 5324-5331
    • Sugiura, C.1    Kobayashi, Y.2    Aoki, S.3    Sugita, C.4    Sugita, M.5
  • 67
    • 0036211065 scopus 로고    scopus 로고
    • GRIMM: Genome rearrangements web server
    • Tesler, G. 2002. GRIMM: genome rearrangements web server. Bioinformatics 18:492-493.
    • (2002) Bioinformatics , vol.18 , pp. 492-493
    • Tesler, G.1
  • 68
    • 1342288009 scopus 로고    scopus 로고
    • LDDist: A Perl module for calculating LogDet pair-wise distances for protein and nucleotide sequences
    • Thollesson, M. 2004. LDDist: a Perl module for calculating LogDet pair-wise distances for protein and nucleotide sequences. Bioinformatics 20:416-418.
    • (2004) Bioinformatics , vol.20 , pp. 416-418
    • Thollesson, M.1
  • 69
    • 0036232908 scopus 로고    scopus 로고
    • Phylogenetic relationships among streptophytes as inferred from chloroplast small and large subunit rRNA gene sequences
    • Turmel, M., M. Ehara, C. Otis, and C. Lemieux. 2002. Phylogenetic relationships among streptophytes as inferred from chloroplast small and large subunit rRNA gene sequences. J. Phycol. 38:364-375.
    • (2002) J. Phycol. , vol.38 , pp. 364-375
    • Turmel, M.1    Ehara, M.2    Otis, C.3    Lemieux, C.4
  • 70
    • 0027295667 scopus 로고
    • Analysis of the chloroplast large subunit ribosomal RNA gene from 17 Chlamydomonas taxa. Three internal transcribed spacers and 12 group I intron insertion sites
    • Turmel, M., R. R. Gutell, J. P. Mercier, C. Otis, and C. Lemieux. 1993. Analysis of the chloroplast large subunit ribosomal RNA gene from 17 Chlamydomonas taxa. Three internal transcribed spacers and 12 group I intron insertion sites. J. Mol. Biol. 232:446-467.
    • (1993) J. Mol. Biol. , vol.232 , pp. 446-467
    • Turmel, M.1    Gutell, R.R.2    Mercier, J.P.3    Otis, C.4    Lemieux, C.5
  • 71
    • 0033197514 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequences of Nephroselmis olivacea and Pedinomonas minor: Two radically different evolutionary patterns within green algae
    • Turmel, M., C. Lemieux, G. Burger, B. F. Lang, C. Otis, I. Plante, and M. W. Gray. 1999. The complete mitochondrial DNA sequences of Nephroselmis olivacea and Pedinomonas minor: two radically different evolutionary patterns within green algae. Plant Cell 11:1717-1729.
    • (1999) Plant Cell , vol.11 , pp. 1717-1729
    • Turmel, M.1    Lemieux, C.2    Burger, G.3    Lang, B.F.4    Otis, C.5    Plante, I.6    Gray, M.W.7
  • 72
    • 0027454523 scopus 로고
    • Group I introns interrupt the chloroplast psaB and psbC and the mitochondrial rrnL gene in Chlamydomonas
    • Turmel, M., J.-P. Mercier, and M.-J. Côté. 1993. Group I introns interrupt the chloroplast psaB and psbC and the mitochondrial rrnL gene in Chlamydomonas. Nucleic Acids Res. 21:5242-5250.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 5242-5250
    • Turmel, M.1    Mercier, J.-P.2    Côté, M.-J.3
  • 73
    • 0036135441 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequence of Mesostigma viride identifies this green alga as the earliest green plant divergence and predicts a highly compact mitochondrial genome in the ancestor of all green plants
    • Turmel, M., C. Otis, and C. Lemieux. 2002a. The complete mitochondrial DNA sequence of Mesostigma viride identifies this green alga as the earliest green plant divergence and predicts a highly compact mitochondrial genome in the ancestor of all green plants. Mol. Biol. Evol. 19:24-38.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 24-38
    • Turmel, M.1    Otis, C.2    Lemieux, C.3
  • 74
    • 0037143760 scopus 로고    scopus 로고
    • The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: Insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants
    • USA
    • _. 2002b. The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants. Proc. Natl. Acad. Sci. USA 99:11275-11280.
    • (2002) Proc. Natl. Acad. Sci. , vol.99 , pp. 11275-11280
  • 75
    • 0042922459 scopus 로고    scopus 로고
    • The mitochondrial genome of Chara vulgaris: Insights into the mitochondrial DNA architecture of the last common ancestor of green algae and land plants
    • _. 2003. The mitochondrial genome of Chara vulgaris: insights into the mitochondrial DNA architecture of the last common ancestor of green algae and land plants. Plant Cell 15:1888-1903.
    • (2003) Plant Cell , vol.15 , pp. 1888-1903
  • 76
    • 27744492579 scopus 로고    scopus 로고
    • The complete chloroplast DNA sequences of the charophycean green algae Staurastrum and Zygnema reveal that the chloroplast genome underwent extensive changes during the evolution of the Zygnematales
    • _. 2005. The complete chloroplast DNA sequences of the charophycean green algae Staurastrum and Zygnema reveal that the chloroplast genome underwent extensive changes during the evolution of the Zygnematales. BMC Biol. 3:22.
    • (2005) BMC Biol. , vol.3 , pp. 22
  • 78
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang, Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13:555-556.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 555-556
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.