RRTree: Relative-Rate Tests between groups of sequences on a phylogenetic tree

Bioinformatics

Volumn 16, Issue 3, 2000, Pages 296-297

  Robinson Rechavi, Marc ^a,c   Huchon, Dorothée ^b  

^a TEL AVIV UNIVERSITY   (Israel)

^b INSTITUT DES SCIENCES DE L EVOLUTION   (France)

^c UNIVERSITÉ DE LYON   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; COMPUTER PROGRAM; DNA SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

EID: 0034129663     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/16.3.296     Document Type: Article

References (12)

1. Berry, V. and Gascuel, O. (1996) On the interpretation of bootstrap trees: appropriate threshold of clade selection and induced gain. Mol. Biol. Evol., 13, 999-1011.
2. Galtier, N. and Gouy, M. (1995) Inferring phylogenies from DNA sequences of unequal base compositions. Proc. Natl Acad. Sci. USA, 92, 11317-11321.
3. Galtier, N., Gouy, M. and Gautier, C. (1996) SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci., 12, 543-548.
4. Jermiin, L.S. (1997) K2WuLi: A program to conduct relative-rate tests from DNA sequences. http://jcsmr.anu.edu.au/dmm/humgen.
5. Kumar, S. (1995) PHYLTEST: Phylogeny Hypothesis Texting. Penn State University, University Park, PA 16801.
6. Li, P. and Bousquet, J. (1992) Relative-rate test for nucleotide substitutions between two lineages. Mol. Biol. Evol., 9, 1185-1189.
7. Li, W.H. (1993) Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J. Mol. Evol., 36, 96-99.
8. Pamilo, P. and Bianchi, N.O. (1993) Evolution of the Zfx and Zfy genes: rates and interdependence between the genes. Mol. Biol. Evol., 10, 271-281.
9. Robinson, M., Gouy, M., Gautier, C. and Mouchiroud, D. (1998) Sensitivity of the relative-rate test to taxonomic sampling. Mol. Biol. Evol., 15, 1091-1098.
10. Sarich, V.M. and Wilson, A.C. (1973) Generation time and genomic evolution in primates. Science, 179, 1144-1147.
11. Takezaki, N., Rzhetsky, A. and Nei, M. (1995) Phylogenetic test of the molecular clock and linearized trees. Mol. Biol. Evol., 12, 823-833.
12. Wu, C.I. and Li, W.H. (1985) Evidence for higher rates of nucleotide substitution in rodents than in man. Proc. Natl Acad. Sci. USA, 82, 1741-1745.