메뉴 건너뛰기




Volumn 57, Issue 1, 2003, Pages 16-26

Origin, evolution, and metabolic role of a novel glycolytic GAPDH enzyme recruited by land plant plastids

Author keywords

Gene duplication; Glyceraldehyde 3 phosphate dehydrogenase; Intron conservation; Land plant origin; Plastid glycolysis; Transit peptide acquisition

Indexed keywords

GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; NICOTINAMIDE ADENINE DINUCLEOTIDE; NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE;

EID: 0042672742     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-002-2441-y     Document Type: Article
Times cited : (83)

References (54)
  • 1
    • 0002367729 scopus 로고    scopus 로고
    • MOLPHY version 2.3: Programs for molecular phylogenetics based on maximum likelihood
    • Adachi J, Hasegawa M (1996) MOLPHY version 2.3: Programs for molecular phylogenetics based on maximum likelihood. Comp Sci Monogr 28:1-150
    • (1996) Comp Sci Monogr , vol.28 , pp. 1-150
    • Adachi, J.1    Hasegawa, M.2
  • 2
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815
    • (2000) Nature , vol.408 , pp. 796-815
  • 3
    • 0031859596 scopus 로고    scopus 로고
    • NAD-dependent malate dehydrogenase and glyceraldehyde 3-phosphate dehydrogenase isoenzyme play an important role in dark metabolism of various plastid types
    • Backhausen JE, Vetter S, Baalmann E, Kitzmann C, Scheibe R (1998) NAD-dependent malate dehydrogenase and glyceraldehyde 3-phosphate dehydrogenase isoenzyme play an important role in dark metabolism of various plastid types. Planta 205:359-366
    • (1998) Planta , vol.205 , pp. 359-366
    • Backhausen, J.E.1    Vetter, S.2    Baalmann, E.3    Kitzmann, C.4    Scheibe, R.5
  • 4
    • 0024698882 scopus 로고
    • Cloning and sequence analysis of cDNAs encoding the cytosolic precursors of subunits GapA and GapB of chloroplast glyceraldehyde-3-phosphate dehydrogenase from pea and spinach
    • Brinkmann H, Cerff R, Salomon M, Soll J (1989) Cloning and sequence analysis of cDNAs encoding the cytosolic precursors of subunits GapA and GapB of chloroplast glyceraldehyde-3-phosphate dehydrogenase from pea and spinach. Plant Mol Biol 13:81-94
    • (1989) Plant Mol Biol , vol.13 , pp. 81-94
    • Brinkmann, H.1    Cerff, R.2    Salomon, M.3    Soll, J.4
  • 6
    • 0028874305 scopus 로고
    • A molecular phylogeny of bryophytes based on the nuclear encoded 18S rRNA genes
    • Capesius I (1995) A molecular phylogeny of bryophytes based on the nuclear encoded 18S rRNA genes. J Plant Phys 146:59-63
    • (1995) J Plant Phys , vol.146 , pp. 59-63
    • Capesius, I.1
  • 7
    • 0013287649 scopus 로고
    • Glyceraldehyde-3-phosphate dehydrogenase (NADP) from Sinapis alba. Steady state kinetics
    • Cerff R (1978) Glyceraldehyde-3-phosphate dehydrogenase (NADP) from Sinapis alba. Steady state kinetics. Phytochemistry 17:2061-2067
    • (1978) Phytochemistry , vol.17 , pp. 2061-2067
    • Cerff, R.1
  • 8
    • 0002381906 scopus 로고
    • Separation and purification of NAD- and NADP-linked glyceraldehyde-3-phosphate dehydrogenases from higher plants
    • Edelman M, Hallick RB, Chua N-H (eds). Elsevier Biomedical Press, Amsterdam
    • Cerff R (1982) Separation and purification of NAD- and NADP-linked glyceraldehyde-3-phosphate dehydrogenases from higher plants. In: Edelman M, Hallick RB, Chua N-H (eds) Methods in chloroplast molecular biology. Elsevier Biomedical Press, Amsterdam, pp. 683-694
    • (1982) Methods in Chloroplast Molecular Biology , pp. 683-694
    • Cerff, R.1
  • 9
    • 0002219704 scopus 로고
    • The chimeric nature of nuclear genomes and the antiquity of introns as demonstrated by the GAPDH gene system
    • Gò M, Schimmel P (eds). Elsevier Biomedical Press, Amsterdam
    • Cerff R (1995) The chimeric nature of nuclear genomes and the antiquity of introns as demonstrated by the GAPDH gene system. In: Gò M, Schimmel P (eds) Tracing biological evolution in protein and gene structures. Elsevier Biomedical Press, Amsterdam, pp. 205-227
    • (1995) Tracing Biological Evolution in Protein and Gene Structures , pp. 205-227
    • Cerff, R.1
  • 10
    • 0018786983 scopus 로고
    • Subunit structure of higher plant glyceraldehyde-3-phosphate dehydrogenases (EC 1.2.1.12 and EC 1.2.1.13)
    • Cerff R, Chambers SE (1979) Subunit structure of higher plant glyceraldehyde-3-phosphate dehydrogenases (EC 1.2.1.12 and EC 1.2.1.13). J Biol Chem 254:6094-6098
    • (1979) J Biol Chem , vol.254 , pp. 6094-6098
    • Cerff, R.1    Chambers, S.E.2
  • 11
    • 0020357309 scopus 로고
    • Structural diversity and differential light control of mRNAs coding for angiosperm glyceraldehyde-3-phosphate dehydrogenases
    • Cerff R, Kloppstech K (1982) Structural diversity and differential light control of mRNAs coding for angiosperm glyceraldehyde-3-phosphate dehydrogenases. Proc Natl Acad Sci USA 79: 7624-7628
    • (1982) Proc Natl Acad Sci USA , vol.79 , pp. 7624-7628
    • Cerff, R.1    Kloppstech, K.2
  • 12
    • 0021760092 scopus 로고
    • A comprehensive set of sequence analysis programs for the VAX
    • Devereux J, Haeberli P, Smithies O (1984) A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12:387-395
    • (1984) Nucleic Acids Res , vol.12 , pp. 387-395
    • Devereux, J.1    Haeberli, P.2    Smithies, O.3
  • 13
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 40:783-791
    • (1985) Evolution , vol.40 , pp. 783-791
    • Felsenstein, J.1
  • 14
    • 0032949947 scopus 로고    scopus 로고
    • Glyceraldehyde-3-phosphate dehydrogenase gene diversity in eubacteria and eukaryotes: Evidence for intra- and interkingdom gene transfer
    • Figge RM, Schubert M, Brinkmann H, Cerff R (1999) Glyceraldehyde-3-phosphate dehydrogenase gene diversity in eubacteria and eukaryotes: Evidence for intra- and interkingdom gene transfer. Mol Biol Evol 16:429-440
    • (1999) Mol Biol Evol , vol.16 , pp. 429-440
    • Figge, R.M.1    Schubert, M.2    Brinkmann, H.3    Cerff, R.4
  • 15
    • 0032082016 scopus 로고    scopus 로고
    • Metabolic transporters in plastids
    • Flügge UI (1998) Metabolic transporters in plastids. Curr Opin Plant Biol 17:201-206
    • (1998) Curr Opin Plant Biol , vol.17 , pp. 201-206
    • Flügge, U.I.1
  • 16
    • 0021626941 scopus 로고
    • Coleochaete and the origin of land plants
    • Graham LE (1984) Coleochaete and the origin of land plants. Am J Bot 71:603-608
    • (1984) Am J Bot , vol.71 , pp. 603-608
    • Graham, L.E.1
  • 18
    • 0000982410 scopus 로고
    • Phylogenetic connections between the 'green algae' and the 'bryophytes'
    • Graham LE, Delwiche CF, Mishler BD (1991) Phylogenetic connections between the 'green algae' and the 'bryophytes.' Adv Bryol 4:213-244
    • (1991) Adv Bryol , vol.4 , pp. 213-244
    • Graham, L.E.1    Delwiche, C.F.2    Mishler, B.D.3
  • 19
    • 0029047354 scopus 로고
    • A nuclear gene of eubacterial origin in Euglena gracilis reflects cryptic endosymbioses during protist evolution
    • Henze K, Badr A, Wettern M, Cerff R, Martin W (1995) A nuclear gene of eubacterial origin in Euglena gracilis reflects cryptic endosymbioses during protist evolution. Proc Natl Acad Sci USA 92:9122-9126
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 9122-9126
    • Henze, K.1    Badr, A.2    Wettern, M.3    Cerff, R.4    Martin, W.5
  • 20
    • 0027972519 scopus 로고
    • Evidence for RNA editing in mitochondria of all major groups of land plants except the Bryophyta
    • Hiesel R, Combettes B, Brennicke A (1994) Evidence for RNA editing in mitochondria of all major groups of land plants except the Bryophyta. Proc Natl Acad Sci USA 91:629-633
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 629-633
    • Hiesel, R.1    Combettes, B.2    Brennicke, A.3
  • 21
    • 0034849408 scopus 로고    scopus 로고
    • MrBayes: Baysian inference of phylogenetic trees
    • Huelsenbeck JP, Ronquist F (2001) MrBayes: Baysian inference of phylogenetic trees. Bioinformatics 17:754-755
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 23
    • 0030885968 scopus 로고    scopus 로고
    • The origin and early evolution of plants on land
    • Kenrick P, Crane PR (1997) The origin and early evolution of plants on land. Nature 389:33-39
    • (1997) Nature , vol.389 , pp. 33-39
    • Kenrick, P.1    Crane, P.R.2
  • 24
    • 0028006223 scopus 로고
    • Five identical intron positions in ancient duplicated genes of eubacterial origin
    • Kersanach R, Brinkmann H, Liaud MF, Zhang DX, Martin W, Cerff R (1994) Five identical intron positions in ancient duplicated genes of eubacterial origin. Nature 367:387-389
    • (1994) Nature , vol.367 , pp. 387-389
    • Kersanach, R.1    Brinkmann, H.2    Liaud, M.F.3    Zhang, D.X.4    Martin, W.5    Cerff, R.6
  • 25
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea
    • Kishino H, Hasegawa M (1989) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea. J Mol Evol 29:170-179
    • (1989) J Mol Evol , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 26
    • 0029024999 scopus 로고
    • The origin of land plants: Phylogenetic relationships among charophytes, bryophytes, and vascular plants inferred from complete small-subunit ribosomal RNA gene sequences
    • Kranz HD, Miks D, Siegler ML, Capesius I, Sensen CW, Huss VA (1995) The origin of land plants: phylogenetic relationships among charophytes, bryophytes, and vascular plants inferred from complete small-subunit ribosomal RNA gene sequences. J Mol Evol 41:74-84
    • (1995) J Mol Evol , vol.41 , pp. 74-84
    • Kranz, H.D.1    Miks, D.2    Siegler, M.L.3    Capesius, I.4    Sensen, C.W.5    Huss, V.A.6
  • 27
    • 0028294049 scopus 로고
    • MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers
    • Kumar S, Tamura K, Nei M (1994) MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers. Comput Appl Biosci 10:189-191
    • (1994) Comput Appl Biosci , vol.10 , pp. 189-191
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 28
    • 0028430175 scopus 로고
    • Identification of a light-responsive region of the nuclear gene encoding the B subunit of chloroplast glyceraldehyde 3-phosphate dehydrogenase from Arabidopsis thaliana
    • Kwon HB, Park SC, Peng HP, Goodman HM, Dewdney J, Shih MC (1995) identification of a light-responsive region of the nuclear gene encoding the B subunit of chloroplast glyceraldehyde 3-phosphate dehydrogenase from Arabidopsis thaliana Plant Physiol 105:357-367
    • (1995) Plant Physiol , vol.105 , pp. 357-367
    • Kwon, H.B.1    Park, S.C.2    Peng, H.P.3    Goodman, H.M.4    Dewdney, J.5    Shih, M.C.6
  • 30
    • 0029824258 scopus 로고    scopus 로고
    • Exon shuffling and the origin of the mitochondrial targeting function in plant cytochrome cl precursor
    • Long M, de So uza SJ, Rosenberg C, Gilbert W (1996) Exon shuffling and the origin of the mitochondrial targeting function in plant cytochrome cl precursor. Proc Natl Acad Sci USA 93:7727-7731
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 7727-7731
    • Long, M.1    De Souza, S.J.2    Rosenberg, C.3    Gilbert, W.4
  • 31
    • 0025195576 scopus 로고
    • The gain of two chloroplast tRNA introns marks the green algal ancestors of land plants
    • Manhart JR, Palmer JD (1990) The gain of two chloroplast tRNA introns marks the green algal ancestors of land plants. Nature 345:268-270
    • (1990) Nature , vol.345 , pp. 268-270
    • Manhart, J.R.1    Palmer, J.D.2
  • 32
    • 0024974965 scopus 로고
    • Structure, evolution and anaerobic regulation of a nuclear gene encoding cytosolic glyceraldehyde-3-phosphate dehydrogenase from maize
    • Martinez P, Martin W, Cerff R (1989) Structure, evolution and anaerobic regulation of a nuclear gene encoding cytosolic glyceraldehyde-3-phosphate dehydrogenase from maize. J Mol Biol 208:551-565
    • (1989) J Mol Biol , vol.208 , pp. 551-565
    • Martinez, P.1    Martin, W.2    Cerff, R.3
  • 33
    • 0030019004 scopus 로고    scopus 로고
    • Phylogeny of extant genera in the family Characeae (Charales, Charophyceae) based on rbcL sequences and morphology
    • McCourt RM, Karol KG, Guerlesquin M, Feist M (1996) Phylogeny of extant genera in the family Characeae (Charales, Charophyceae) based on rbcL sequences and morphology. Am J Bot 83:125-131
    • (1996) Am J Bot , vol.83 , pp. 125-131
    • McCourt, R.M.1    Karol, K.G.2    Guerlesquin, M.3    Feist, M.4
  • 34
    • 0028534791 scopus 로고
    • Molecular characterization of a novel, nuclear-encoded, NAD(+)-dependent glyceraldehyde-3-phosphate dehydrogenase in plastids of the gymnosperm Pinus sylvestris L.
    • Meyer-Gauen G, Schnarrenberger C, Cerff R, Martin W (1994) Molecular characterization of a novel, nuclear-encoded, NAD(+)-dependent glyceraldehyde-3-phosphate dehydrogenase in plastids of the gymnosperm Pinus sylvestris L. Plant Mol Biol 26:1155-1166
    • (1994) Plant Mol Biol , vol.26 , pp. 1155-1166
    • Meyer-Gauen, G.1    Schnarrenberger, C.2    Cerff, R.3    Martin, W.4
  • 35
  • 37
    • 0030452170 scopus 로고    scopus 로고
    • Cis-acting elements essential for light regulation of the nuclear gene encoding the A subunit of chloroplast glyceraldehyde 3-phosphate dehydrogenase in Arabidopsis thaliana
    • Park SC, Kwon HB, Shih MC (1996) Cis-acting elements essential for light regulation of the nuclear gene encoding the A subunit of chloroplast glyceraldehyde 3-phosphate dehydrogenase in Arabidopsis thaliana. Plant Physiol 112:1563-1571
    • (1996) Plant Physiol , vol.112 , pp. 1563-1571
    • Park, S.C.1    Kwon, H.B.2    Shih, M.C.3
  • 38
    • 0027494836 scopus 로고
    • MUST, a computer package of management utilities for sequences and trees
    • Philippe H (1993) MUST, a computer package of management utilities for sequences and trees. Nucleic Acids Res 21:5264-5272
    • (1993) Nucleic Acids Res , vol.21 , pp. 5264-5272
    • Philippe, H.1
  • 39
    • 0032996560 scopus 로고    scopus 로고
    • Phylogeny of early land plants: Insights from genes and genomes
    • Qiu YL, Palmer JD (1999) Phylogeny of early land plants: insights from genes and genomes. Trends Plant Sci 4:26-30
    • (1999) Trends Plant Sci , vol.4 , pp. 26-30
    • Qiu, Y.L.1    Palmer, J.D.2
  • 40
    • 0032514486 scopus 로고    scopus 로고
    • The gain of three mitochondrial introns identifies liverworts as the earliest land plants
    • Qiu YL, Cho Y, Cox JC, Palmer JD (1998) The gain of three mitochondrial introns identifies liverworts as the earliest land plants. Nature 394:671-674
    • (1998) Nature , vol.394 , pp. 671-674
    • Qiu, Y.L.1    Cho, Y.2    Cox, J.C.3    Palmer, J.D.4
  • 41
    • 0024707618 scopus 로고
    • Differential expression and sequence analysis of the maize glyceraldehyde-3-phosphate dehydrogenase gene family
    • Russell DA, Sachs MM (1989) Differential expression and sequence analysis of the maize glyceraldehyde-3-phosphate dehydrogenase gene family. Plant Cell 1:793-803
    • (1989) Plant Cell , vol.1 , pp. 793-803
    • Russell, D.A.1    Sachs, M.M.2
  • 42
    • 0025998781 scopus 로고
    • The maize cytosolic glyceraldehyde-3-phosphate dehydrogenase gene family: Organ-specific expression and genetic analysis
    • Russell DA, Sachs MM (1991) The maize cytosolic glyceraldehyde-3-phosphate dehydrogenase gene family: Organ-specific expression and genetic analysis. Mol Gen Genet 229:219-228
    • (1991) Mol Gen Genet , vol.229 , pp. 219-228
    • Russell, D.A.1    Sachs, M.M.2
  • 44
    • 0030570983 scopus 로고    scopus 로고
    • C-Terminal truncation of spinach chloroplast NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase prevents inactivation and reaggregation
    • Scheibe R, Baalmann E, Backhausen JE, Rak C, Vetter S (1996) C-Terminal truncation of spinach chloroplast NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase prevents inactivation and reaggregation. Biochim Biophys Acta 1296:228-234
    • (1996) Biochim Biophys Acta , vol.1296 , pp. 228-234
    • Scheibe, R.1    Baalmann, E.2    Backhausen, J.E.3    Rak, C.4    Vetter, S.5
  • 45
    • 0028036109 scopus 로고
    • SAG-Sammlung von algenkulturen at the University of Göttingen. Catalogue of Strains 1994
    • Schlösser UG (1994) SAG-Sammlung von Algenkulturen at the University of Göttingen. Catalogue of Strains 1994. Bot Acta 107:113-186
    • (1994) Bot Acta , vol.107 , pp. 113-186
    • Schlösser, U.G.1
  • 47
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira H, Hasegawa M (1999) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol 16:1114-1116
    • (1999) Mol Biol Evol , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 48
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
    • Strimmer K, von Haeseler A (1996) Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies. Mol Biol Evol 13:964-969
    • (1996) Mol Biol Evol , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 50
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882
    • (1997) Nucleic Acids Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 51
    • 0032482983 scopus 로고    scopus 로고
    • Evolutionary conserved light regulation of Calvin cycle activity by NADPH-mediated reversible phosphoribulokinase/CP12/glyceraldehyde-3-phosphate dehydrogenase complex dissociation
    • Wedel N, Soll J (1998) Evolutionary conserved light regulation of Calvin cycle activity by NADPH-mediated reversible phosphoribulokinase/CP12/glyceraldehyde-3-phosphate dehydrogenase complex dissociation. Proc Natl Acad Sci USA 95:9699-9704
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 9699-9704
    • Wedel, N.1    Soll, J.2
  • 52
    • 0035031966 scopus 로고    scopus 로고
    • A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
    • Whelan S, Goldman N (2001) A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol 18:691-699
    • (2001) Mol Biol Evol , vol.18 , pp. 691-699
    • Whelan, S.1    Goldman, N.2
  • 53
    • 0027142302 scopus 로고
    • Stress responses and metabolic regulation of glyceraldehyde-3-phosphate dehydrogenase genes in Arabidopsis
    • Yang Y, Kwon HB, Peng HP, Shih MC (1993) Stress responses and metabolic regulation of glyceraldehyde-3-phosphate dehydrogenase genes in Arabidopsis. Plant Physiol 101:209-216
    • (1993) Plant Physiol , vol.101 , pp. 209-216
    • Yang, Y.1    Kwon, H.B.2    Peng, H.P.3    Shih, M.C.4
  • 54
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z (1997) PAML: A program package for phylogenetic analysis by maximum likelihood. Cabios 13:555-556
    • (1997) Cabios , vol.13 , pp. 555-556
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.