메뉴 건너뛰기




Volumn 11, Issue 9, 1999, Pages 1717-1729

The complete mitochondrial DNA sequences of Nephroselmis olivacea and Pedinomonas minor: Two radically different evolutionary patterns within green algae

Author keywords

[No Author keywords available]

Indexed keywords

ALGAE; ANIMALIA; CHARALES; CHLAMYDOMONAS; CHLOROPHYCEAE; CHLOROPHYTA; EMBRYOPHYTA; EUKARYOTA; NEPHROSELMIS; NEPHROSELMIS OLIVACEA; PEDINOMONAS; PEDINOMONAS MINOR; PRASINOPHYCEAE; PROTOTHECA WICKERHAMII; STREPTOPHYTA; TREBOUXIOPHYCEAE; ULVOPHYCEAE;

EID: 0033197514     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.11.9.1717     Document Type: Article
Times cited : (139)

References (56)
  • 1
    • 0004253604 scopus 로고    scopus 로고
    • MOLPHY version 2.3B3: Programs for Molecular Phylogenetics based on maximum likelihood
    • Tokyo: Institute of Statistical Mathematics
    • Adachi, J., and Hasegawa, M. (1996a). MOLPHY Version 2.3B3: Programs for Molecular Phylogenetics Based on Maximum Likelihood. Computer Science Monographs, No. 28. (Tokyo: Institute of Statistical Mathematics).
    • (1996) Computer Science Monographs, No. 28 , vol.28
    • Adachi, J.1    Hasegawa, M.2
  • 2
    • 0029974748 scopus 로고    scopus 로고
    • Model of amino acid substitution in proteins encoded by mitochondrial DNA
    • Adachi, J., and Hasegawa, M. (1996b). Model of amino acid substitution in proteins encoded by mitochondrial DNA. J. Mol. Evol. 42, 459-468.
    • (1996) J. Mol. Evol. , vol.42 , pp. 459-468
    • Adachi, J.1    Hasegawa, M.2
  • 3
    • 0031758603 scopus 로고    scopus 로고
    • Algal phylogeny and the origin of land plants
    • Bhattacharya, D., and Medlin, L. (1998). Algal phylogeny and the origin of land plants. Plant Physiol. 116, 9-15.
    • (1998) Plant Physiol. , vol.116 , pp. 9-15
    • Bhattacharya, D.1    Medlin, L.2
  • 4
    • 0024277968 scopus 로고
    • Scrambled ribosomal RNA gene pieces in Chlamydomonas reinhardtii mitochondrial DNA
    • Boer, P.H., and Gray, M.W. (1988a). Scrambled ribosomal RNA gene pieces in Chlamydomonas reinhardtii mitochondrial DNA. Cell 55, 399-411.
    • (1988) Cell , vol.55 , pp. 399-411
    • Boer, P.H.1    Gray, M.W.2
  • 5
    • 0024236046 scopus 로고
    • Transfer RNA genes and the genetic code in Chlamydomonas reinhardtii mitochondria
    • Boer, P.H., and Gray, M.W. (1988b). Transfer RNA genes and the genetic code in Chlamydomonas reinhardtii mitochondria. Curr. Genet. 14, 583-590.
    • (1988) Curr. Genet. , vol.14 , pp. 583-590
    • Boer, P.H.1    Gray, M.W.2
  • 6
    • 0025761166 scopus 로고
    • Short dispersed repeats localized in spacer regions in Chlamydomonas reinhardtii mitochondrial DNA
    • Boer, P.H., and Gray, M.W. (1991). Short dispersed repeats localized in spacer regions in Chlamydomonas reinhardtii mitochondrial DNA. Curr. Genet. 19, 309-312.
    • (1991) Curr. Genet. , vol.19 , pp. 309-312
    • Boer, P.H.1    Gray, M.W.2
  • 8
    • 0030122375 scopus 로고    scopus 로고
    • Phylogeny of the Chlamydomonadales (Chlorophyceae): A comparison of ribosomal RNA gene sequences from the nucleus and the chloroplast
    • Buchheim, M.A., Lemieux, C., Otis, C., Gutell, R.R., Chapman, R.L., and Turmel, M. (1996). Phylogeny of the Chlamydomonadales (Chlorophyceae): A comparison of ribosomal RNA gene sequences from the nucleus and the chloroplast. Mol. Phylogenet. Evol. 5, 391-402.
    • (1996) Mol. Phylogenet. Evol. , vol.5 , pp. 391-402
    • Buchheim, M.A.1    Lemieux, C.2    Otis, C.3    Gutell, R.R.4    Chapman, R.L.5    Turmel, M.6
  • 9
    • 0028941560 scopus 로고
    • The mitochondrial genome of the amoeboid protozoon, Acanthamoeba castellanii: Complete sequence, gene content, and genome organization
    • Burger, G., Plante, I., Lonergan, K.M., and Gray, M.W. (1995). The mitochondrial genome of the amoeboid protozoon, Acanthamoeba castellanii: Complete sequence, gene content, and genome organization. J. Mol. Biol. 245, 522-537.
    • (1995) J. Mol. Biol. , vol.245 , pp. 522-537
    • Burger, G.1    Plante, I.2    Lonergan, K.M.3    Gray, M.W.4
  • 11
    • 0002122557 scopus 로고
    • Alger
    • T.W. Böcher, M. Lange, and T. Sørensen, eds (Copenhagen: Munksgaard)
    • Christensen, T. (1962). Alger. In Botanik, Vol. 2, Systematisk Botanik, T.W. Böcher, M. Lange, and T. Sørensen, eds (Copenhagen: Munksgaard), pp. 1-178.
    • (1962) Botanik, Vol. 2, Systematisk Botanik , vol.2 , pp. 1-178
    • Christensen, T.1
  • 12
    • 0025170106 scopus 로고
    • The apocytochrome b gene of Chlamydomonas smithii contains a mobile intron related to both Saccharomyces and Neurospora introns
    • Colleaux, L., Michel-Wolwertz, M.-R., Matagne, R.F., and Dujon, B. (1990). The apocytochrome b gene of Chlamydomonas smithii contains a mobile intron related to both Saccharomyces and Neurospora introns. Mol. Gen. Genet. 223, 288-296.
    • (1990) Mol. Gen. Genet. , vol.223 , pp. 288-296
    • Colleaux, L.1    Michel-Wolwertz, M.-R.2    Matagne, R.F.3    Dujon, B.4
  • 13
    • 0027321537 scopus 로고
    • The single group-I intron in the chloroplast rrnL gene of Chlamydomonas humicola encodes a site-specific DNA endonuclease (I-chuI)
    • Côté, V., Mercier, J.P., Lemieux, C., and Turmel, M. (1993). The single group-I intron in the chloroplast rrnL gene of Chlamydomonas humicola encodes a site-specific DNA endonuclease (I-ChuI). Gene 129, 69-76.
    • (1993) Gene , vol.129 , pp. 69-76
    • Côté, V.1    Mercier, J.P.2    Lemieux, C.3    Turmel, M.4
  • 14
    • 0027998965 scopus 로고
    • Comparative structure and genomic organization of the discontinuous mitochondrial ribosomal RNA genes of Chlamydomonas eugametos and Chlamydomonas reinhardtii
    • Denovan-Wright, E.M., and Lee, R.W. (1994). Comparative structure and genomic organization of the discontinuous mitochondrial ribosomal RNA genes of Chlamydomonas eugametos and Chlamydomonas reinhardtii. J. Mol. Biol. 241, 298-311.
    • (1994) J. Mol. Biol. , vol.241 , pp. 298-311
    • Denovan-Wright, E.M.1    Lee, R.W.2
  • 15
    • 0031884735 scopus 로고    scopus 로고
    • Complete sequence of the mitochondrial DNA of Chlamydomonas eugametos
    • Denovan-Wright, E.M., Nedelcu, A.M., and Lee, R.W. (1998). Complete sequence of the mitochondrial DNA of Chlamydomonas eugametos. Plant Mol. Biol. 36, 285-295.
    • (1998) Plant Mol. Biol. , vol.36 , pp. 285-295
    • Denovan-Wright, E.M.1    Nedelcu, A.M.2    Lee, R.W.3
  • 16
    • 0026070269 scopus 로고
    • Chloroplast ribosomal intron of Chlamydomonas reinhardtii: In vitro self-splicing, DNA endonuclease activity and in vivo mobility
    • Dürrenberger, F., and Rochaix, J.-D. (1991). Chloroplast ribosomal intron of Chlamydomonas reinhardtii: In vitro self-splicing, DNA endonuclease activity and in vivo mobility. EMBO J. 10, 3495-3501.
    • (1991) EMBO J. , vol.10 , pp. 3495-3501
    • Dürrenberger, F.1    Rochaix, J.-D.2
  • 17
    • 0024152983 scopus 로고
    • Phylogenies from molecular sequences: Inference and reliability
    • Felsenstein, J. (1988). Phylogenies from molecular sequences: Inference and reliability. Annu. Rev. Genet. 22, 521-565.
    • (1988) Annu. Rev. Genet. , vol.22 , pp. 521-565
    • Felsenstein, J.1
  • 18
    • 0029113811 scopus 로고
    • The mitochondrial LSU rDNA of the brown alga Pylaiella littoralis reveals α-proteobacterial features and is split by four group IIB introns with an atypical phylogeny
    • Fontaine, J.M., Rousvoal, S., Leblanc, C., Kloareg, B., and Loiseaux-de Goër, S. (1995). The mitochondrial LSU rDNA of the brown alga Pylaiella littoralis reveals α-proteobacterial features and is split by four group IIB introns with an atypical phylogeny. J. Mol. Biol. 251, 378-389.
    • (1995) J. Mol. Biol. , vol.251 , pp. 378-389
    • Fontaine, J.M.1    Rousvoal, S.2    Leblanc, C.3    Kloareg, B.4    Loiseaux-De Goër, S.5
  • 19
    • 0002721825 scopus 로고    scopus 로고
    • The evolution of the green algae
    • Friedl, T. (1997). The evolution of the green algae. Plant Syst. Evol. 11 (suppl.), 87-101.
    • (1997) Plant Syst. Evol. , vol.11 , Issue.SUPPL. , pp. 87-101
    • Friedl, T.1
  • 22
    • 0000527581 scopus 로고    scopus 로고
    • Organellar evolution
    • D.M. Roberts, P. Sharp, G. Alderson, and M. Collins, eds (Cambridge, UK: Cambridge University Press)
    • Gray, M.W., and Spencer, D.F. (1996). Organellar evolution. In Evolution of Microbial Life, D.M. Roberts, P. Sharp, G. Alderson, and M. Collins, eds (Cambridge, UK: Cambridge University Press), pp. 109-126.
    • (1996) Evolution of Microbial Life , pp. 109-126
    • Gray, M.W.1    Spencer, D.F.2
  • 23
    • 0001300429 scopus 로고
    • On the evolutionary origin of the plant mitochondrion and its genome
    • Gray, M.W., Cedergren, R., Abel, Y., and Sankoff, D. (1989). On the evolutionary origin of the plant mitochondrion and its genome. Proc. Natl. Acad. Sci. USA 86, 2267-2271.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 2267-2271
    • Gray, M.W.1    Cedergren, R.2    Abel, Y.3    Sankoff, D.4
  • 25
    • 0028069573 scopus 로고
    • Accuracies of the simple methods for estimating the bootstrap probability of a maximum-likelihood tree
    • Hasegawa, M., and Kishino, H. (1994). Accuracies of the simple methods for estimating the bootstrap probability of a maximum-likelihood tree. Mol. Biol. Evol. 11, 142-145.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 142-145
    • Hasegawa, M.1    Kishino, H.2
  • 26
    • 0022376704 scopus 로고
    • Dating the ape-human split by a molecular clock of mitochondrial DNA
    • Hasegawa, M., Kishino, H., and Yano, T. (1985). Dating the ape-human split by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22, 160-174.
    • (1985) J. Mol. Evol. , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 28
    • 0029559112 scopus 로고
    • Physical map and gene organization of the mitochondrial genome from the unicellular green alga Platymonas (Tetraselmis) subcordiformis (Prasinophyceae)
    • Kessler, U., and Zetsche, K. (1995). Physical map and gene organization of the mitochondrial genome from the unicellular green alga Platymonas (Tetraselmis) subcordiformis (Prasinophyceae). Plant Mol. Biol. 29, 1081-1086.
    • (1995) Plant Mol. Biol. , vol.29 , pp. 1081-1086
    • Kessler, U.1    Zetsche, K.2
  • 29
    • 0031665387 scopus 로고    scopus 로고
    • The mitochondrial genome of Clorogonium elongatum inferred from the complete sequence
    • Kroymann, J., and Zetsche, K. (1998). The mitochondrial genome of Clorogonium elongatum inferred from the complete sequence. J. Mol. Evol. 47, 431-440.
    • (1998) J. Mol. Evol. , vol.47 , pp. 431-440
    • Kroymann, J.1    Zetsche, K.2
  • 31
    • 0000457381 scopus 로고
    • Preparing lambda DNA from phage lysates
    • F.M. Ausubel, R. Brent, R.E. Kingston, D.D. Moore, J.G. Seidman, J.A. Smith, and K. Struhl, eds (Media, PA: John Wiley and Sons)
    • Lech, K. (1990). Preparing lambda DNA from phage lysates. In Current Protocols in Molecular Biology, Vol. 1, F.M. Ausubel, R. Brent, R.E. Kingston, D.D. Moore, J.G. Seidman, J.A. Smith, and K. Struhl, eds (Media, PA: John Wiley and Sons), pp. 1.13.1-1.13.10.
    • (1990) Current Protocols in Molecular Biology , vol.1 , pp. 1131-11310
    • Lech, K.1
  • 32
    • 0028237896 scopus 로고
    • The ribosomal RNA gene region in Acanthamoeba castellanii mitochondrial DNA: A case of evolutionary transfer of introns between mitochondria and plastids?
    • Lonergan, K.M., and Gray, M.W. (1994). The ribosomal RNA gene region in Acanthamoeba castellanii mitochondrial DNA: A case of evolutionary transfer of introns between mitochondria and plastids? J. Mol. Biol. 239, 476-499.
    • (1994) J. Mol. Biol. , vol.239 , pp. 476-499
    • Lonergan, K.M.1    Gray, M.W.2
  • 33
    • 0026826414 scopus 로고
    • The group I intron of apocytochrome b gene from Chlamydomonas smithii encodes a site-specific endonuclease
    • Ma, D.-P., King, Y.-T., Kim, Y., and Luckett, W.S., Jr. (1992). The group I intron of apocytochrome b gene from Chlamydomonas smithii encodes a site-specific endonuclease. Plant Mol. Biol. 18, 1001-1004.
    • (1992) Plant Mol. Biol. , vol.18 , pp. 1001-1004
    • Ma, D.-P.1    King, Y.-T.2    Kim, Y.3    Luckett W.S., Jr.4
  • 34
    • 0031298486 scopus 로고    scopus 로고
    • Mitochondrial RNase P: The RNA family grows
    • Martin, N.C., and Lang, B.F. (1997). Mitochondrial RNase P: The RNA family grows. Nucleic Acids Symp. Ser. 36, 42-44.
    • (1997) Nucleic Acids Symp. Ser. , vol.36 , pp. 42-44
    • Martin, N.C.1    Lang, B.F.2
  • 35
    • 0040548674 scopus 로고
    • A biochemical and ultrastructural evaluation of the taxonomic position of Glaucosphaera vacuolata Korsh
    • McCracken, D.A., Nadakavukaren, M.J., and Cain, J.R. (1980). A biochemical and ultrastructural evaluation of the taxonomic position of Glaucosphaera vacuolata Korsh. New Phytol. 86, 39-44.
    • (1980) New Phytol. , vol.86 , pp. 39-44
    • McCracken, D.A.1    Nadakavukaren, M.J.2    Cain, J.R.3
  • 38
    • 0000398552 scopus 로고
    • Flagellar structure in algae: A review, with new observations particularly on the Chrysophyceae, Phaeophyceae (Fucophyceae), Euglenophyceae, and Reckertia
    • Moestrup, Ø. (1982). Flagellar structure in algae: A review, with new observations particularly on the Chrysophyceae, Phaeophyceae (Fucophyceae), Euglenophyceae, and Reckertia. Phycologia 21, 427-528.
    • (1982) Phycologia , vol.21 , pp. 427-528
    • Moestrup, Ø.1
  • 40
    • 0025249858 scopus 로고
    • Contrasting modes and tempos of genome evolution in land plant organelles
    • Palmer, J.D. (1990). Contrasting modes and tempos of genome evolution in land plant organelles. Trends Genet. 6, 115-120.
    • (1990) Trends Genet. , vol.6 , pp. 115-120
    • Palmer, J.D.1
  • 41
    • 0022423109 scopus 로고
    • The chloroplast ribosomal intron of Chlamydomonas reinhardtii codes for a polypeptide related to mitochondrial maturases
    • Rochaix, J.D., Rahire, M., and Michel, F. (1985). The chloroplast ribosomal intron of Chlamydomonas reinhardtii codes for a polypeptide related to mitochondrial maturases. Nucleic Acids Res. 13, 975-984.
    • (1985) Nucleic Acids Res. , vol.13 , pp. 975-984
    • Rochaix, J.D.1    Rahire, M.2    Michel, F.3
  • 43
    • 0028087047 scopus 로고
    • The plant mitochondrial genome: Physical structure, information content, RNA editing, and gene migration to the nucleus
    • Schuster, W., and Brennicke, A. (1994). The plant mitochondrial genome: Physical structure, information content, RNA editing, and gene migration to the nucleus. Annu. Rev. Plant Physiol. Plant Mol. Biol. 45, 61-78.
    • (1994) Annu. Rev. Plant Physiol. Plant Mol. Biol. , vol.45 , pp. 61-78
    • Schuster, W.1    Brennicke, A.2
  • 44
    • 0029853929 scopus 로고    scopus 로고
    • Mycoplasma fermentans simplifies our view of the catalytic core of ribonuclease P RNA
    • Siegel, R.W., Banta, A.B., Haas, E.S., Brown, J.W., and Pace, N.R. (1996). Mycoplasma fermentans simplifies our view of the catalytic core of ribonuclease P RNA. RNA 2, 452-462.
    • (1996) RNA , vol.2 , pp. 452-462
    • Siegel, R.W.1    Banta, A.B.2    Haas, E.S.3    Brown, J.W.4    Pace, N.R.5
  • 45
    • 0001733731 scopus 로고
    • A cladistic evaluation of the lower and higher green plants (Viridiplantae)
    • Sluiman, H.J. (1985). A cladistic evaluation of the lower and higher green plants (Viridiplantae). Plant Syst. Evol. 149, 217-232.
    • (1985) Plant Syst. Evol. , vol.149 , pp. 217-232
    • Sluiman, H.J.1
  • 46
  • 47
    • 0028133871 scopus 로고
    • Prasinophytes form independent lineages within the Chlorophyta: Evidence from ribosomal RNA sequence comparisons
    • Steinkötter, J., Bhattacharya, D., Semmelroth, I., Bibeau, C., and Melkonian, M. (1994). Prasinophytes form independent lineages within the Chlorophyta: Evidence from ribosomal RNA sequence comparisons. J. Phycol. 30, 340-345.
    • (1994) J. Phycol. , vol.30 , pp. 340-345
    • Steinkötter, J.1    Bhattacharya, D.2    Semmelroth, I.3    Bibeau, C.4    Melkonian, M.5
  • 48
    • 0027968068 scopus 로고
    • CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G., and Gibson, T.J. (1994). CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 49
    • 0027454523 scopus 로고
    • Group I introns interrupt the chloroplast psaB and psbC and the mitochondrial rrnL gene in Chlamydomonas
    • Turmel, M., Mercier, J.-P., and Côté, M.-J. (1993). Group I introns interrupt the chloroplast psaB and psbC and the mitochondrial rrnL gene in Chlamydomonas. Nucleic Acids Res. 21, 5242-5250.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 5242-5250
    • Turmel, M.1    Mercier, J.-P.2    Côté, M.-J.3
  • 50
    • 0028997284 scopus 로고
    • Evolutionary transfer of ORF-containing group I introns between different subcellular compartments (chloroplasts and mitochondrion)
    • Turmel, M., Côté, V., Otis, C., Mercier, J.-P., Gray, M.W., Lonergan, K.M., and Lemieux, C. (1995). Evolutionary transfer of ORF-containing group I introns between different subcellular compartments (chloroplasts and mitochondrion). Mol. Biol. Evol. 12, 533-545.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 533-545
    • Turmel, M.1    Côté, V.2    Otis, C.3    Mercier, J.-P.4    Gray, M.W.5    Lonergan, K.M.6    Lemieux, C.7
  • 51
    • 0031021278 scopus 로고    scopus 로고
    • The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides
    • Unseld, M., Marienfeld, J.R., Brandt, P., and Brennicke, A. (1997). The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides. Nat. Genet. 15, 57-61.
    • (1997) Nat. Genet. , vol.15 , pp. 57-61
    • Unseld, M.1    Marienfeld, J.R.2    Brandt, P.3    Brennicke, A.4
  • 52
    • 0027359351 scopus 로고
    • Mitochondrial DNA of Chlamydomonas reinhardtii: The structure of the ends of the linear 15.8-kb genome suggests mechanisms for DNA replication
    • Vahrenholz, C., Rieman, G., Pratje, E., Dujon, B., and Michaelis, G. (1993). Mitochondrial DNA of Chlamydomonas reinhardtii: The structure of the ends of the linear 15.8-kb genome suggests mechanisms for DNA replication. Curr. Genet. 24, 241-247.
    • (1993) Curr. Genet. , vol.24 , pp. 241-247
    • Vahrenholz, C.1    Rieman, G.2    Pratje, E.3    Dujon, B.4    Michaelis, G.5
  • 54
    • 0019441235 scopus 로고
    • The mitochondrial genome is large and variable in a family of plants
    • Ward, B.L., Anderson, R.S., and Bendich, A.J. (1981). The mitochondrial genome is large and variable in a family of plants. Cell 25, 793-803.
    • (1981) Cell , vol.25 , pp. 793-803
    • Ward, B.L.1    Anderson, R.S.2    Bendich, A.J.3
  • 55
    • 0032478550 scopus 로고    scopus 로고
    • A novel and ubiquitous system for membrane targeting and secretion of cofactor-containing proteins
    • Weiner, J.H., Bilous, P.T., Shaw, G.M., Lubitz, S.P., Frost, L., Thomas, G.H., Cole, J.A., and Turner, R.J. (1998). A novel and ubiquitous system for membrane targeting and secretion of cofactor-containing proteins. Cell 93, 93-101.
    • (1998) Cell , vol.93 , pp. 93-101
    • Weiner, J.H.1    Bilous, P.T.2    Shaw, G.M.3    Lubitz, S.P.4    Frost, L.5    Thomas, G.H.6    Cole, J.A.7    Turner, R.J.8
  • 56
    • 0028330225 scopus 로고
    • Complete sequence of the mitochondrial DNA of the chlorophyte alga Prototheca wickerhamii. Gene content and genome organization
    • Wolff, G., Plante, I., Lang, B.F., Kück, U., and Burger, G. (1994). Complete sequence of the mitochondrial DNA of the chlorophyte alga Prototheca wickerhamii. Gene content and genome organization. J. Mol. Biol. 237, 75-86.
    • (1994) J. Mol. Biol. , vol.237 , pp. 75-86
    • Wolff, G.1    Plante, I.2    Lang, B.F.3    Kück, U.4    Burger, G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.