Heterotachy, an important process of protein evolution

Molecular Biology and Evolution

Volumn 19, Issue 1, 2002, Pages 1-7

  Lopez, P ^a   Casane, D ^a   Philippe, H ^a  

^a SORBONNE UNIVERSITÉ   (France)

Author keywords

Covarion; Cytochrome b; Molecular evolution; Phylogeny; Vertebrates

Indexed keywords

AMINO ACID; CYTOCHROME B; PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; DYNAMICS; GENOME; MOLECULAR EVOLUTION; PHYLOGENY; PROTEIN LOCALIZATION;

VERTEBRATA;

EID: 0036134757     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a003973     Document Type: Article

References (42)

1. Model of amino acid substitution in proteins encoded by mitochondrial DNA
2. Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA
3. Iterated profile searches with PSI-BLAST - A tool for discovery in protein databases
4. Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships
5. The nonidentity of invariable positions in the cytochromes c of different species
6. An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution
7. Weighted parsimony: Does it work?
8. Maximum-likelihood phylogenetic analysis under a covarion-like model
9. Function-structure analysis of proteins using covarion-based evolutionary approaches: Elongation factors
10. Critical analysis of eukaryotic phylogeny: A case study based on the HSP70 family
11. Statistical methods for testing functional divergence after gene duplication
12. A simple method for estimating the parameter of substitution rate variation among sites
13. Systematic bias in phylogenetic analysis: Is the Strepsiptera problem solved?
14. The rapid generation of mutation data matrices from protein sequences
15. A mutation data matrix for transmembrane proteins
16. Expanding the functional human mitochondrial DNA database by the establishment of primate xenomitochondrial cybrids
17. Molecular evolutionary clock and the neutral theory
18. A covariotide model explains apparent phylogenetic structure of oxygenic photosynthetic lineages
19. The root of the tree of life in the light of the covarion model
20. Testing the covarion hypothesis of molecular evolution
21. Measuring shifts in function and evolutionary opportunity using variability profiles: A case Study of the globins
22. Redesigning the substrate specificity of an enzyme by cumulative effects of the mutations of non-active site residues
23. Phylogeny of eukaryotes based on ribosomal RNA: Long-branch attraction and models of sequence evolution
24. A critical study of homoplasy in molecular data with the use of a morphologically based cladogram
25. On the conservation of protein sequences in evolution
26. Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
27. Unbiased estimates of the number of nucleotide substitutions when substitution rate varies among different sites
28. A structural view of evolutionary divergence
29. Functional co-operation between the nuclei of Saccharomyces cerevisiae and mitochondria from other yeast species
30. Invariable sites models and their use in phylogeny reconstruction
31. Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
32. Are guinea pigs rodents? The importance of adequate models in molecular phylogenetics
33. Directed evolution: The 'rational' basis for 'irrational' design
34. Modeling the covarion hypothesis of nucleotide substitution
35. Fitting discrete probability distributions to evolutionary events
36. Microsporidia: Accumulating molecular evidence that a group of amitochondriate and suspectedly primitive eukaryotes are just curious fungi
37. Crystal structure of the cytochrome bcI complex from bovine heart mitochondria
38. Complete repopulation of mouse mitochondrial DNA-less cells with rat mitochondrial DNA restores mitochondrial translation but not mitochondrial respiratory function
39. Among-site rate variation and its impact on phylogenetic analyses