GenAlyzer: Interactive visualization of sequence similarities between entire genomes

Bioinformatics

Volumn 20, Issue 12, 2004, Pages 1964-1965

  Choudhuri, Jomuna V ^a   Schleiermacher, Chris ^b   Kurtz, Stefan ^c   Giegerich, Robert ^a  

^a BIELEFELD UNIVERSITY   (Germany)

^b Artemis Pharmaceuticals GmbH   (Germany)

^c UNIVERSITY OF HAMBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; COMPUTER PROGRAM; DNA SEQUENCE; ESCHERICHIA COLI; GENOME; INFORMATION PROCESSING; NONHUMAN; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE DATABASE; SEQUENCE HOMOLOGY; SHIGELLA FLEXNERI;

EID: 4444302046     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth161     Document Type: Article

References (4)

1. Eder,V., Ventura,M., Ianigro,M., Teti,M., Rocchi,M. and Archidiacono,N. (2003)Chromosome 6 phylogeny in primates and centromere repositioning. Mol. Biol. Evol., 20, 1506-1512.
2. Jin,Q., Yuan,Z., Xu,J., Wang,Y., Shen,Y., Lu,W., Wang,J., Liu,H., Yang,J. and Yang,F. et al. (2002) Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157. Nucleic Acids Res., 30, 4432-4441.
3. Kurtz,S., Choudhuri,J., Ohlebusch,E., Schleiermacher,C., Stoye,J. and Giegerich,R. (2001)REPuter: the manifold applications of repeat analysis on a genomic scale. Nucleic Acids Res., 29, 4633-4642.
4. Kurtz,S. and Schleiermacher,C. (1999) REPuter: fast computation of maximal repeats in complete genomes. Bioinformatics, 15, 426-427.