-
1
-
-
0031552366
-
Thermodynamics of the interaction of barnase and barstar: Changes in free energy versus changes in enthalpy on mutation
-
Frisch, C., Schreiber, G., Johnson, C. M., and Fersht, A. R. (1997) Thermodynamics of the interaction of barnase and barstar: Changes in free energy versus changes in enthalpy on mutation, J. Mol. Biol. 267, 696-706.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 696-706
-
-
Frisch, C.1
Schreiber, G.2
Johnson, C.M.3
Fersht, A.R.4
-
2
-
-
0033103834
-
TCR binding to peptide-MHC stabilizes a flexible recognition interface
-
Willcox, B. E., Gao, G. F., Wyer, J. R., Ladbury, J. E., Bell, J. I., Jakodsen, B. K., and van der Merwe, P. A. (1999) TCR binding to peptide-MHC stabilizes a flexible recognition interface, Immunity 10, 357-365.
-
(1999)
Immunity
, vol.10
, pp. 357-365
-
-
Willcox, B.E.1
Gao, G.F.2
Wyer, J.R.3
Ladbury, J.E.4
Bell, J.I.5
Jakodsen, B.K.6
Van Der Merwe, P.A.7
-
3
-
-
3242797452
-
A detailed thermodynamic analysis of ras/effector complex interfaces
-
Kiel, C., Serrano, L., and Herrmann, C. (2004) A detailed thermodynamic analysis of ras/effector complex interfaces, J. Mol. Biol. 340, 1039-1058.
-
(2004)
J. Mol. Biol.
, vol.340
, pp. 1039-1058
-
-
Kiel, C.1
Serrano, L.2
Herrmann, C.3
-
4
-
-
0000372879
-
Protein-protein interactions: Interface structure, binding thermodynamics, and mutational analysis
-
Stites, W. E. (1997) Protein-protein interactions: Interface structure, binding thermodynamics, and mutational analysis, Chem. Rev. 97, 1233-1250.
-
(1997)
Chem. Rev.
, vol.97
, pp. 1233-1250
-
-
Stites, W.E.1
-
5
-
-
0035824866
-
Mechanism and cleavage specificity of the H-N-H endonuclease colicin E9
-
Pommer, A. J., Cal, S., Keeble, A. H., Walker, D., Evans, S. J., Kühlmann, U. C., Cooper, A., Connolly, B. A., Hemmings, A. M., Moore, G. R., James, R., and Kleanthous, C. (2001)-Mechanism and cleavage specificity of the H-N-H endonuclease colicin E9, J. Mol. Biol 314, 735-749.
-
(2001)
J. Mol. Biol
, vol.314
, pp. 735-749
-
-
Pommer, A.J.1
Cal, S.2
Keeble, A.H.3
Walker, D.4
Evans, S.J.5
Kühlmann, U.C.6
Cooper, A.7
Connolly, B.A.8
Hemmings, A.M.9
Moore, G.R.10
James, R.11
Kleanthous, C.12
-
6
-
-
0031939176
-
Immunity proteins and their specificity for endonuclease colicins: Telling right from wrong in protein-protein recognition
-
Kleanthous, C., Hemmings, A. M., Moore, G. R., and James, R. (1998) Immunity proteins and their specificity for endonuclease colicins: Telling right from wrong in protein-protein recognition, Mol. Microbiol. 28, 227-233.
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 227-233
-
-
Kleanthous, C.1
Hemmings, A.M.2
Moore, G.R.3
James, R.4
-
7
-
-
0033006298
-
Structural and mechanistic basis of immunity toward endonuclease colicins
-
Kleanthous, C., Kühlmann, U. C., Pommer, A. J., Ferguson, N., Radford, S. E., Moore, G. R., James, R., and Hemmings, A. M. (1999) Structural and mechanistic basis of immunity toward endonuclease colicins, Nat. Struct. Biol. 6, 243-252.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 243-252
-
-
Kleanthous, C.1
Kühlmann, U.C.2
Pommer, A.J.3
Ferguson, N.4
Radford, S.E.5
Moore, G.R.6
James, R.7
Hemmings, A.M.8
-
8
-
-
33644861929
-
Nuclease inhibitors
-
(Kleanthous, C., Ed.) Oxford University Press, Oxford, U.K.
-
Pommer, A. J., and Kleanthous, C. (2000) Nuclease inhibitors, in Frontiers in Molecular Biology: Protein-Protein Recognition (Kleanthous, C., Ed.) Oxford University Press, Oxford, U.K.
-
(2000)
Frontiers in Molecular Biology: Protein-Protein Recognition
-
-
Pommer, A.J.1
Kleanthous, C.2
-
9
-
-
0035478958
-
Immunity proteins: Enzyme inhibitors that avoid the active site
-
Kleanthous, C., and Walker, D. (2001) Immunity proteins: Enzyme inhibitors that avoid the active site, Trends Biochem. Sci. 26, 624-631.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 624-631
-
-
Kleanthous, C.1
Walker, D.2
-
10
-
-
0028866770
-
Protein-protein interactions in colicin E9 DNase-immunity protein complexes. 1. Diffusion-controlled association and femtomolar binding for the cognate complex
-
Wallis, R., Moore, G. R., James, R., and Kleanthous, C. (1995) Protein-protein interactions in colicin E9 DNase-immunity protein complexes. 1. Diffusion-controlled association and femtomolar binding for the cognate complex, Biochemistry 34, 13743-13750.
-
(1995)
Biochemistry
, vol.34
, pp. 13743-13750
-
-
Wallis, R.1
Moore, G.R.2
James, R.3
Kleanthous, C.4
-
11
-
-
0028886403
-
Protein-protein interactions in colicin E9 DNase-immunity protein complexes. 2. Cognate and non-cognate interactions that span the millimolar to femtomolar affinity range
-
Wallis, R., Leung, K.-Y., Pommer, A. J., Videler, H., Moore, G. R., James, R., and Kleanthous, C. (1995) Protein-protein interactions in colicin E9 DNase-immunity protein complexes. 2. Cognate and non-cognate interactions that span the millimolar to femtomolar affinity range, Biochemistry 34, 13751-13759.
-
(1995)
Biochemistry
, vol.34
, pp. 13751-13759
-
-
Wallis, R.1
Leung, K.-Y.2
Pommer, A.J.3
Videler, H.4
Moore, G.R.5
James, R.6
Kleanthous, C.7
-
12
-
-
1542358785
-
Highly discriminating protein-protein interaction specificities in the context of a conserved binding energy hotspot
-
Li, W., Keeble, A. H., Giffard, C., James, R., Moore, G. R., and Kleanthous, C. (2004) Highly discriminating protein-protein interaction specificities in the context of a conserved binding energy hotspot. J. Mol. Biol. 337, 743-759.
-
(2004)
J. Mol. Biol.
, vol.337
, pp. 743-759
-
-
Li, W.1
Keeble, A.H.2
Giffard, C.3
James, R.4
Moore, G.R.5
Kleanthous, C.6
-
13
-
-
0030867940
-
Protein-protein interaction specificity of Im9 for the endonuclease toxin colicin E9 defined by homologue-scanning mutagenesis
-
Li, W., Dennis, C. A., Moore, G. R., James, R., and Kleanthous, C. (1997) Protein-protein interaction specificity of Im9 for the endonuclease toxin colicin E9 defined by homologue-scanning mutagenesis, J. Biol. Chem. 272, 22253-22258.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 22253-22258
-
-
Li, W.1
Dennis, C.A.2
Moore, G.R.3
James, R.4
Kleanthous, C.5
-
14
-
-
0032566286
-
Dual recognition and the role of specificity-determining residues in colicin E9 DNase-immunity protein interactions
-
Li, W., Hamill, S. J., Hemmings, A. M., Moore, G. R., James, R., and Kleanthous, C. (1998) Dual recognition and the role of specificity-determining residues in colicin E9 DNase-immunity protein interactions, Biochemistry 37, 11771-11779.
-
(1998)
Biochemistry
, vol.37
, pp. 11771-11779
-
-
Li, W.1
Hamill, S.J.2
Hemmings, A.M.3
Moore, G.R.4
James, R.5
Kleanthous, C.6
-
15
-
-
0032512424
-
Specificity in protein-protein recognition; Conserved Im9 residues are the major determinants of stability in the colicin E9 DNase-Im9 complex
-
Wallis, R., Leung, K.-Y., Osborne, M. J., James, R., Moore, G. R., and Kleanthous, C. (1998) Specificity in protein-protein recognition; Conserved Im9 residues are the major determinants of stability in the colicin E9 DNase-Im9 complex, Biochemistry 37, 476-485.
-
(1998)
Biochemistry
, vol.37
, pp. 476-485
-
-
Wallis, R.1
Leung, K.-Y.2
Osborne, M.J.3
James, R.4
Moore, G.R.5
Kleanthous, C.6
-
16
-
-
24044523202
-
The kinetic basis for dual recognition in colicin endonuclease-immunity protein complexes
-
Keeble, A. H., and Kleanthous, C. (2005) The kinetic basis for dual recognition in colicin endonuclease-immunity protein complexes, J. Mol. Biol. 352, 656-671.
-
(2005)
J. Mol. Biol.
, vol.352
, pp. 656-671
-
-
Keeble, A.H.1
Kleanthous, C.2
-
17
-
-
0032127769
-
A structural comparison of the colicin immunity proteins Im7 and Im9 gives new insights into the molecular determinants of immunity-protein specificity
-
Dennis, C. A., Videler, H., Pauptit, R. A., Wallis, R., James, R., Moore, G. R., and Kleanthous, C. (1998) A structural comparison of the colicin immunity proteins Im7 and Im9 gives new insights into the molecular determinants of immunity-protein specificity, Biochem. J. 333, 183-191.
-
(1998)
Biochem. J.
, vol.333
, pp. 183-191
-
-
Dennis, C.A.1
Videler, H.2
Pauptit, R.A.3
Wallis, R.4
James, R.5
Moore, G.R.6
Kleanthous, C.7
-
18
-
-
0036589170
-
Structural aspects of the inhibition of DNase and rRNase colicins by their immunity proteins
-
Kolade, O. O., Carr, S. B., Kühlmann, U. C., Pommer, A., Kleanthous, C., Bouchcinsky, C. A., and Hemmings, A. M. (2002) Structural aspects of the inhibition of DNase and rRNase colicins by their immunity proteins, Biochimie 84, 439-446.
-
(2002)
Biochimie
, vol.84
, pp. 439-446
-
-
Kolade, O.O.1
Carr, S.B.2
Kühlmann, U.C.3
Pommer, A.4
Kleanthous, C.5
Bouchcinsky, C.A.6
Hemmings, A.M.7
-
19
-
-
0034051071
-
Slow conformational dynamics of an endonuclease persist in its complex with its natural protein inhibitor
-
Whittaker, S. B., Czisch, M., Wechselberger, R., Kaptein, R., Hemmings, A. M., James, R., Kleanthous, C., and Moore, G. R. (2000) Slow conformational dynamics of an endonuclease persist in its complex with its natural protein inhibitor, Protein Sci. 9, 713-720.
-
(2000)
Protein Sci.
, vol.9
, pp. 713-720
-
-
Whittaker, S.B.1
Czisch, M.2
Wechselberger, R.3
Kaptein, R.4
Hemmings, A.M.5
James, R.6
Kleanthous, C.7
Moore, G.R.8
-
20
-
-
0036440979
-
The crystal structure of the nuclease domain of colicin E7 suggests a mechanism for binding to double-stranded DNA by the H-N-H endonucleases
-
Cheng, Y. S., Hsia, K. C., Doudeva, L. G., Chak, K. F., and Yuan, H. S. (2002) The crystal structure of the nuclease domain of colicin E7 suggests a mechanism for binding to double-stranded DNA by the H-N-H endonucleases, J. Mol. Biol. 324, 227-236.
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 227-236
-
-
Cheng, Y.S.1
Hsia, K.C.2
Doudeva, L.G.3
Chak, K.F.4
Yuan, H.S.5
-
21
-
-
0034283147
-
Specificity in protein-protein interactions: The structural basis for dual recognition in endonuclease colicin-immunity protein complexes
-
Kühlmann, U. C., Pommer, A. J., Moore, G. R., James, R., and Kleanthous, C. (2000) Specificity in protein-protein interactions: The structural basis for dual recognition in endonuclease colicin-immunity protein complexes, J. Mol. Biol. 301, 1163-1178.
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 1163-1178
-
-
Kühlmann, U.C.1
Pommer, A.J.2
Moore, G.R.3
James, R.4
Kleanthous, C.5
-
22
-
-
0002347541
-
The crystal structure of the DNase domain of colicin E7 in complex with its inhibitor Im7 protein
-
Ko, T. P., Liao, C. C., Ku, W. Y., Chak, K. F., and Yuan, H. S. (1999) The crystal structure of the DNase domain of colicin E7 in complex with its inhibitor Im7 protein, Structure 7, 97-102.
-
(1999)
Structure
, vol.7
, pp. 97-102
-
-
Ko, T.P.1
Liao, C.C.2
Ku, W.Y.3
Chak, K.F.4
Yuan, H.S.5
-
23
-
-
0032850996
-
Thermodynamic analysis of biomolecular interactions
-
Cooper, A. (1996) Thermodynamic analysis of biomolecular interactions, Curr. Opin. Chem. Biol. 3, 557-563.
-
(1996)
Curr. Opin. Chem. Biol.
, vol.3
, pp. 557-563
-
-
Cooper, A.1
-
24
-
-
0037072261
-
Multistep binding of transition metals to the H-N-H endonuclease toxin colicin E9
-
Keeble, A. H., Hemmings, A. M., James, R., Moore, G. R., and Kleanthous, C. (2002) Multistep binding of transition metals to the H-N-H endonuclease toxin colicin E9, Biochemistry 41, 10234-10244.
-
(2002)
Biochemistry
, vol.41
, pp. 10234-10244
-
-
Keeble, A.H.1
Hemmings, A.M.2
James, R.3
Moore, G.R.4
Kleanthous, C.5
-
25
-
-
0039107950
-
Homing in on the role of transition metals in the HNH motif of colicin endonucleases
-
Pommer, A. J., Kuhlmann, U. C., Cooper, A., Hemmings, A. M., Moore, G. R., James, R., and Kleanthous, C. (1999) Homing in on the role of transition metals in the HNH motif of colicin endonucleases, J. Biol. Chem. 274, 27153-27160.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 27153-27160
-
-
Pommer, A.J.1
Kuhlmann, U.C.2
Cooper, A.3
Hemmings, A.M.4
Moore, G.R.5
James, R.6
Kleanthous, C.7
-
26
-
-
11144356279
-
Distinct conformational stability and functional activity of four highly homologous endonuclease colicins
-
van den Bremer, E. T., Keeble, A. H., Jiskoot, W., Spelbrink, R. E., Maier, C. S., van Hoek, A., Visser, A. J., James, R., Moore, G. R., Kleanthous, C., and Heck, A. J. (2004) Distinct conformational stability and functional activity of four highly homologous endonuclease colicins, Protein Sci. 13, 1391-1401.
-
(2004)
Protein Sci.
, vol.13
, pp. 1391-1401
-
-
Van Den Bremer, E.T.1
Keeble, A.H.2
Jiskoot, W.3
Spelbrink, R.E.4
Maier, C.S.5
Van Hoek, A.6
Visser, A.J.7
James, R.8
Moore, G.R.9
Kleanthous, C.10
Heck, A.J.11
-
27
-
-
23444450909
-
Coupling of local folding to site-specific binding of proteins to DNA
-
Spolar, R. S., and Record, M. T., Jr. (1994) Coupling of local folding to site-specific binding of proteins to DNA, Science 263, 777-784.
-
(1994)
Science
, vol.263
, pp. 777-784
-
-
Spolar, R.S.1
Record Jr., M.T.2
-
28
-
-
0035965868
-
Heat does not come in different colours: Entropy-enthalpy compensation, free energy windows, quantum confinement, pressure perturbation calorimetry, solvation and the multiple causes of heat capacity effects in biomolecular interactions
-
Cooper, A., Johnson, C. M., Lakey, J. H., and Nollmann, M. (2001) Heat does not come in different colours: Entropy-enthalpy compensation, free energy windows, quantum confinement, pressure perturbation calorimetry, solvation and the multiple causes of heat capacity effects in biomolecular interactions, Biophys. Chem. 93, 215-230.
-
(2001)
Biophys. Chem.
, vol.93
, pp. 215-230
-
-
Cooper, A.1
Johnson, C.M.2
Lakey, J.H.3
Nollmann, M.4
-
29
-
-
0029832524
-
Evaluation of linked protonation effects in protein binding reactions using isothermal titration calorimetry
-
Baker, B. M., and Murphy, K. P. (1996) Evaluation of linked protonation effects in protein binding reactions using isothermal titration calorimetry, Biophys. J. 71, 2049-2055.
-
(1996)
Biophys. J.
, vol.71
, pp. 2049-2055
-
-
Baker, B.M.1
Murphy, K.P.2
-
30
-
-
0031670461
-
Enthalpy and heat capacity changes for the proton dissociation of various buffer components in 0.1 M potassium chloride
-
Fukada, H., and Takahashi, K. (1998) Enthalpy and heat capacity changes for the proton dissociation of various buffer components in 0.1 M potassium chloride, Proteins: Struct, Fund., Genet. 33, 159-166.
-
(1998)
Proteins: Struct, Fund., Genet.
, vol.33
, pp. 159-166
-
-
Fukada, H.1
Takahashi, K.2
-
31
-
-
0029395478
-
Win some, lose some: Enthalpy-entropy compensation in weak intermolecular interactions
-
Dunitz, J. D. (1995) Win some, lose some: Enthalpy-entropy compensation in weak intermolecular interactions, Chem. Biol. 2, 709-712.
-
(1995)
Chem. Biol.
, vol.2
, pp. 709-712
-
-
Dunitz, J.D.1
-
32
-
-
0029080864
-
Thermodynamic mapping of the inhibitor site of the aspartic protease endothiapepsin
-
Gomez, J., and Freire, E. (1995) Thermodynamic mapping of the inhibitor site of the aspartic protease endothiapepsin, J. Mol. Biol. 252, 337-350.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 337-350
-
-
Gomez, J.1
Freire, E.2
-
33
-
-
0034732643
-
NMR studies of metal ion binding to the Zn-finger-like HNH motif of colicin E9
-
Hannan, J. P., Whittaker, S. B., Hemmings, A. M., James, R., Kleanthous, C., and Moore, G. R. (2000) NMR studies of metal ion binding to the Zn-finger-like HNH motif of colicin E9, J. Inorg. Biochem. 79, 365-370.
-
(2000)
J. Inorg. Biochem.
, vol.79
, pp. 365-370
-
-
Hannan, J.P.1
Whittaker, S.B.2
Hemmings, A.M.3
James, R.4
Kleanthous, C.5
Moore, G.R.6
-
34
-
-
0025856601
-
Kinetic maturation of an immune response
-
Foote, J., and Milstein, C. (1991) Kinetic maturation of an immune response, Nature 352, 530-532.
-
(1991)
Nature
, vol.352
, pp. 530-532
-
-
Foote, J.1
Milstein, C.2
-
35
-
-
0026559783
-
Antibody framework residues affecting the conformation of the hypervariable loops
-
Foote, J., and Winter, G. (1992) Antibody framework residues affecting the conformation of the hypervariable loops, J. Mol. Biol. 224, 487-499.
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 487-499
-
-
Foote, J.1
Winter, G.2
-
36
-
-
0027768856
-
The contribution of contact and non-contact residues of antibody in the affinity of binding to antigen. The interaction of mutant D1.3 antibodies with lysozyme
-
Hawkins, R. E., Russell, S. J., Baier, M., and Winter, G. (1993) The contribution of contact and non-contact residues of antibody in the affinity of binding to antigen. The interaction of mutant D1.3 antibodies with lysozyme, J. Mol. Biol. 234, 958-964.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 958-964
-
-
Hawkins, R.E.1
Russell, S.J.2
Baier, M.3
Winter, G.4
-
37
-
-
0008863560
-
Some factors in the interpretation of protein denaturation
-
Kauzmann, W. (1959) Some factors in the interpretation of protein denaturation, Adv. Protein Chem. 14, 1-63.
-
(1959)
Adv. Protein Chem.
, vol.14
, pp. 1-63
-
-
Kauzmann, W.1
-
38
-
-
0024199422
-
Stability of protein structure and hydrophobic interaction
-
Privalov, P. L., and Gill, S. J. (1988) Stability of protein structure and hydrophobic interaction, Adv. Protein Chem. 39, 191-234.
-
(1988)
Adv. Protein Chem.
, vol.39
, pp. 191-234
-
-
Privalov, P.L.1
Gill, S.J.2
-
39
-
-
0025370815
-
Dominant forces in protein folding
-
Dill, K. A. (1990) Dominant forces in protein folding, Biochemistry 29, 7133-7155.
-
(1990)
Biochemistry
, vol.29
, pp. 7133-7155
-
-
Dill, K.A.1
-
40
-
-
0034738021
-
Heat capacity of hydrogen-bonded networks: An alternative view of protein folding thermodynamics
-
Cooper, A. (2000) Heat capacity of hydrogen-bonded networks: An alternative view of protein folding thermodynamics, Biophys. Chem. 85, 25-39.
-
(2000)
Biophys. Chem.
, vol.85
, pp. 25-39
-
-
Cooper, A.1
-
41
-
-
0035895356
-
Polar group burial contributes more to protein stability than nonpolar group burial
-
Pace, C. N. (2001) Polar group burial contributes more to protein stability than nonpolar group burial, Biochemistry 40, 310-313.
-
(2001)
Biochemistry
, vol.40
, pp. 310-313
-
-
Pace, C.N.1
-
42
-
-
0028941934
-
A calorimetric study of the thermal stability of barstar and its interaction with barnase
-
Martinez, J. C., Filimonov, V. V., Mateo, P. L., Schreiber, G., and Fersht. AR. (1995) A calorimetric study of the thermal stability of barstar and its interaction with barnase, Biochemistry 34, 5224-5233.
-
(1995)
Biochemistry
, vol.34
, pp. 5224-5233
-
-
Martinez, J.C.1
Filimonov, V.V.2
Mateo, P.L.3
Schreiber, G.4
Fersht, A.R.5
-
43
-
-
0000725483
-
Thermodynamic fluctuations in protein molecules
-
Cooper, A. (1976) Thermodynamic fluctuations in protein molecules, Proc. Natl. Acad. Sci. U.S.A. 73, 2740-2741.
-
(1976)
Proc. Natl. Acad. Sci. U.S.A.
, vol.73
, pp. 2740-2741
-
-
Cooper, A.1
-
44
-
-
0021726687
-
Protein fluctuations and the thermodynamic uncertainty principle
-
Cooper, A. (1984) Protein fluctuations and the thermodynamic uncertainty principle, Prog. Biophys. Mol. Biol. 44, 181-214.
-
(1984)
Prog. Biophys. Mol. Biol.
, vol.44
, pp. 181-214
-
-
Cooper, A.1
-
45
-
-
0002638463
-
Heat capacity and entropy changes in processes involving proteins
-
Sturtevant, J. M. (1977) Heat capacity and entropy changes in processes involving proteins, Proc. Natl. Acad. Sci. U.S.A. 74, 2236-2240.
-
(1977)
Proc. Natl. Acad. Sci. U.S.A.
, vol.74
, pp. 2236-2240
-
-
Sturtevant, J.M.1
-
46
-
-
0021093448
-
Enthalpy-entropy compensation and heat capacity changes for protein-ligand interactions: General thermodynamic models and data for the binding of nucleotides to ribonuclease A
-
Eftink, M. R., Anusiem, A. C., and Biltonen, R. L. (1983) Enthalpy-entropy compensation and heat capacity changes for protein-ligand interactions: General thermodynamic models and data for the binding of nucleotides to ribonuclease A, Biochemistry 22, 3884-3896.
-
(1983)
Biochemistry
, vol.22
, pp. 3884-3896
-
-
Eftink, M.R.1
Anusiem, A.C.2
Biltonen, R.L.3
-
47
-
-
0026684671
-
Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water
-
Spolar, R. S., Livingstone, J. R., and Record, M. T., Jr. (1992) Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water, Biochemistry 31, 3947-3955.
-
(1992)
Biochemistry
, vol.31
, pp. 3947-3955
-
-
Spolar, R.S.1
Livingstone, J.R.2
Record Jr., M.T.3
-
48
-
-
0031547981
-
Dissecting the energetics of a protein-protein interaction: The binding of ovomucoid third domain to elastase
-
Baker, B. M., and Murphy, K. P. (1997) Dissecting the energetics of a protein-protein interaction: The binding of ovomucoid third domain to elastase, J. Mol. Biol. 268, 557-569.
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 557-569
-
-
Baker, B.M.1
Murphy, K.P.2
-
49
-
-
0035805184
-
Water at hydrophobic surfaces: Weak hydrogen bonding and strong orientation effects
-
Scatena, L. F., Brown, M. G., and Richmond, G. L. (2001) Water at hydrophobic surfaces: Weak hydrogen bonding and strong orientation effects, Science 292, 908-912.
-
(2001)
Science
, vol.292
, pp. 908-912
-
-
Scatena, L.F.1
Brown, M.G.2
Richmond, G.L.3
-
50
-
-
1042298819
-
Heat capacity effects of water molecules and ions at a protein-DNA interface
-
Bergqvist, S., Williams, M. A., O'Brien, R., and Ladbury, J. E. (2004) Heat capacity effects of water molecules and ions at a protein-DNA interface, J. Mol. Biol. 336, 829-842.
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 829-842
-
-
Bergqvist, S.1
Williams, M.A.2
O'Brien, R.3
Ladbury, J.E.4
-
51
-
-
0034971963
-
Heat capacity changes upon burial of polar and nonpolar groups in proteins
-
Loladze, V. V., Ermolenko, D. N., and Makhatadze, G. I. (2001) Heat capacity changes upon burial of polar and nonpolar groups in proteins, Protein Sci. 10, 1343-1352.
-
(2001)
Protein Sci.
, vol.10
, pp. 1343-1352
-
-
Loladze, V.V.1
Ermolenko, D.N.2
Makhatadze, G.I.3
-
52
-
-
0033778163
-
Comparison of binding energies of SrcSH2-phosphotyrosyl peptides with structure-based prediction using surface area based empirical parameterization
-
Henriques, D. A., Ladbury, J. E., and Jackson, R. M. (2000) Comparison of binding energies of SrcSH2-phosphotyrosyl peptides with structure-based prediction using surface area based empirical parameterization, Protein Sci. 9, 1975-1985.
-
(2000)
Protein Sci.
, vol.9
, pp. 1975-1985
-
-
Henriques, D.A.1
Ladbury, J.E.2
Jackson, R.M.3
-
53
-
-
0019889063
-
Thermodynamics of protein association reactions: Forces contributing to stability
-
Ross, P. D., and Subramanian, S. (1981) Thermodynamics of protein association reactions: Forces contributing to stability, Biochemistry 20, 3096-3102.
-
(1981)
Biochemistry
, vol.20
, pp. 3096-3102
-
-
Ross, P.D.1
Subramanian, S.2
-
54
-
-
0035819985
-
Configuration-dependent heat capacity of pairwise hydrophobic interactions
-
Shimizu, S., and Chan, H. S. (2001) Configuration-dependent heat capacity of pairwise hydrophobic interactions, J. Am. Chem. Soc. 123, 2083-2084.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 2083-2084
-
-
Shimizu, S.1
Chan, H.S.2
-
55
-
-
0036891682
-
Origins of protein denatured state compactness and hydrophobic clustering in aqueous urea: Inferences from nonpolar potentials of mean force
-
Shimizu, S., and Chan, H. S. (2002) Origins of protein denatured state compactness and hydrophobic clustering in aqueous urea: Inferences from nonpolar potentials of mean force, Proteins 49, 560-566.
-
(2002)
Proteins
, vol.49
, pp. 560-566
-
-
Shimizu, S.1
Chan, H.S.2
-
56
-
-
0141903441
-
Heat capacity change of the hydrophobic interaction
-
Rick, S. W. (2003) Heat capacity change of the hydrophobic interaction, J. Phys. Chem. B 197, 9853-9857.
-
(2003)
J. Phys. Chem. B
, vol.197
, pp. 9853-9857
-
-
Rick, S.W.1
-
57
-
-
2342655841
-
Temperature dependence of the hydrophobic hydration and interaction of simple solutes: An examination of five popular water models
-
Paschek, D. (2004) Temperature dependence of the hydrophobic hydration and interaction of simple solutes: An examination of five popular water models, J. Chem. Phys. 120, 6674-6690.
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 6674-6690
-
-
Paschek, D.1
-
58
-
-
2942655388
-
Heat capacity effects associated with the hydrophobic hydration and interaction of simple solutes: A detailed structural and energetical analysis based on molecular dynamics simulations
-
Paschek, D. (2004) Heat capacity effects associated with the hydrophobic hydration and interaction of simple solutes: A detailed structural and energetical analysis based on molecular dynamics simulations, J. Chem. Phys. 120, 10605-10617.
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 10605-10617
-
-
Paschek, D.1
-
59
-
-
0037470558
-
The thermodynamics of protein-protein recognition as characterized by a combination of volumetric and calorimetric techniques: The binding of turkey ovomucoid third domain to α-chymotrypsin
-
Filfil, R., and Chalikian, T. V. (2003) The thermodynamics of protein-protein recognition as characterized by a combination of volumetric and calorimetric techniques: The binding of turkey ovomucoid third domain to α-chymotrypsin, J. Mol. Biol. 326, 1271-1288.
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 1271-1288
-
-
Filfil, R.1
Chalikian, T.V.2
-
60
-
-
0037143574
-
Identification of key amino acid residues in the assembly of enzymes into the pyruvate dehydrogenase complex of Bacillus stearothermophilus: A kinetic and thermodynamic analysis
-
Jung, H. I., Cooper, A., and Perham, R. N. (2002) Identification of key amino acid residues in the assembly of enzymes into the pyruvate dehydrogenase complex of Bacillus stearothermophilus: A kinetic and thermodynamic analysis, Biochemistry 41, 10446-10453.
-
(2002)
Biochemistry
, vol.41
, pp. 10446-10453
-
-
Jung, H.I.1
Cooper, A.2
Perham, R.N.3
-
61
-
-
0033578783
-
Salt links dominate affinity of antibody HyHEL-5 for lysozyme through enthalpic contributions
-
Wibbenmeyer, J. A., Schuck, P., Smith-Gill, S. J., and Willson, R. C. (1999) Salt links dominate affinity of antibody HyHEL-5 for lysozyme through enthalpic contributions, J. Biol. Chem. 274, 26838-26842.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 26838-26842
-
-
Wibbenmeyer, J.A.1
Schuck, P.2
Smith-Gill, S.J.3
Willson, R.C.4
-
62
-
-
4744338722
-
The extended interface: Measuring non-local effects in biomolecular interactions
-
Ladbury, J. E., and Williams, M. A. (2004) The extended interface: Measuring non-local effects in biomolecular interactions, Curr. Opin. Struct. Biol. 14, 562-569.
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 562-569
-
-
Ladbury, J.E.1
Williams, M.A.2
-
63
-
-
0033572790
-
Wet and dry interfaces: The role of solvent in protein-protein and protein-DNA recognition
-
Janin, J. (1999) Wet and dry interfaces: The role of solvent in protein-protein and protein-DNA recognition, Struct. Fold Des. 7, R277-R279.
-
(1999)
Struct. Fold Des.
, vol.7
-
-
Janin, J.1
-
64
-
-
14744268745
-
Heat capacity effects in protein folding and ligand binding: A re-evaluation of the role of water in biomolecular thermodynamics
-
Cooper, A. (2005) Heat capacity effects in protein folding and ligand binding: A re-evaluation of the role of water in biomolecular thermodynamics, Biophys Chem. 115, 89-97.
-
(2005)
Biophys Chem.
, vol.115
, pp. 89-97
-
-
Cooper, A.1
-
65
-
-
0028228418
-
The entropic cost of bound water in crystals and biomolecules
-
Dunitz, J. D. (1994) The entropic cost of bound water in crystals and biomolecules, Science 264, 670.
-
(1994)
Science
, vol.264
, pp. 670
-
-
Dunitz, J.D.1
-
66
-
-
0037470496
-
Antibody multispecificity mediated by conformational diversity
-
James, L. C., Roversi, P., and Tawfik, D. S. (2003) Antibody multispecificity mediated by conformational diversity, Science 299, 1362-1367.
-
(2003)
Science
, vol.299
, pp. 1362-1367
-
-
James, L.C.1
Roversi, P.2
Tawfik, D.S.3
-
67
-
-
0033103834
-
TCR binding to peptide-MHC stabilizes a flexible recognition interface
-
Willcox, B. E., Gao, G. F., Wyer, J. R., Ladbury, J. E., Bell, J. I., Jakobsen, B. K., and van der Merwe, P. A. (1999) TCR binding to peptide-MHC stabilizes a flexible recognition interface, Immunity 10, 357-365.
-
(1999)
Immunity
, vol.10
, pp. 357-365
-
-
Willcox, B.E.1
Gao, G.F.2
Wyer, J.R.3
Ladbury, J.E.4
Bell, J.I.5
Jakobsen, B.K.6
Van Der Merwe, P.A.7
-
68
-
-
0348047600
-
Evidence that structural rearrangements and/or flexibility during TCR binding can contribute to T cell activation
-
Krogsgaard, M., Prado, N., Adams, E. J., He, X. L., Chow, D. C., Wilson, D. B, Garcia, K. C., and Davis, M. M. (2003) Evidence that structural rearrangements and/or flexibility during TCR binding can contribute to T cell activation, Mol. Cell 12, 1367-1378.
-
(2003)
Mol. Cell
, vol.12
, pp. 1367-1378
-
-
Krogsgaard, M.1
Prado, N.2
Adams, E.J.3
He, X.L.4
Chow, D.C.5
Wilson, D.B.6
Garcia, K.C.7
Davis, M.M.8
-
69
-
-
0347423200
-
Thermodynamic analysis of degenerate recognition by the NKG2D immunoreceptor: Not induced fit but rigid adaptation
-
McFarland, B. J., and Strong, R. K. (2003) Thermodynamic analysis of degenerate recognition by the NKG2D immunoreceptor: Not induced fit but rigid adaptation, Immunity 19, 803-812.
-
(2003)
Immunity
, vol.19
, pp. 803-812
-
-
McFarland, B.J.1
Strong, R.K.2
-
70
-
-
3142657230
-
Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes
-
Kalodimos, C. G., Bins, N., Bonvin, A. M., Levandoski, M. M., Guennuegues, M., Boelens, R., and Kaptein, R. (2004) Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes, Science 305, 386-389.
-
(2004)
Science
, vol.305
, pp. 386-389
-
-
Kalodimos, C.G.1
Bins, N.2
Bonvin, A.M.3
Levandoski, M.M.4
Guennuegues, M.5
Boelens, R.6
Kaptein, R.7
-
71
-
-
11844273937
-
Directed evolution of protein inhibitors of DNA-nucleases by in vitro compartmentalization (IVC) and nano-droplet delivery
-
Bernath, K., Magdassi, S., and Tawfik, D. S. (2005) Directed evolution of protein inhibitors of DNA-nucleases by in vitro compartmentalization (IVC) and nano-droplet delivery, J. Mol. Biol. 345, 1015-1026.
-
(2005)
J. Mol. Biol.
, vol.345
, pp. 1015-1026
-
-
Bernath, K.1
Magdassi, S.2
Tawfik, D.S.3
-
72
-
-
0041347814
-
Structure and energetics of protein-protein interactions: The role of conformational heterogeneity in OMTKY3 binding to serine proteases
-
Horn, J. R., Ramaswamy, S., and Murphy, K. P. (2003) Structure and energetics of protein-protein interactions: The role of conformational heterogeneity in OMTKY3 binding to serine proteases, J. Mol. Biol. 331, 497-508.
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 497-508
-
-
Horn, J.R.1
Ramaswamy, S.2
Murphy, K.P.3
-
73
-
-
0026042814
-
Investigation of the specificity of the interaction between colicin E9 and its immunity protein by site-directed mutagenesis
-
Curtis, M. D., and James, R. (1991) Investigation of the specificity of the interaction between colicin E9 and its immunity protein by site-directed mutagenesis, Mol. Microbiol. 5, 2727-2733.
-
(1991)
Mol. Microbiol.
, vol.5
, pp. 2727-2733
-
-
Curtis, M.D.1
James, R.2
-
74
-
-
0000180763
-
Temperature dependence of the hydrophobic interaction in protein folding
-
Baldwin, R. L. (1986) Temperature dependence of the hydrophobic interaction in protein folding, Proc. Natl. Acad. Sci. U.S.A. 83, 8069-8072.
-
(1986)
Proc. Natl. Acad. Sci. U.S.A.
, vol.83
, pp. 8069-8072
-
-
Baldwin, R.L.1
-
75
-
-
0025098571
-
Common features of protein unfolding and dissolution of hydrophobic compounds
-
Murphy, K. P., Privalov, P. L., and Gill, S. J. (1990) Common features of protein unfolding and dissolution of hydrophobic compounds, Science 247, 559-561.
-
(1990)
Science
, vol.247
, pp. 559-561
-
-
Murphy, K.P.1
Privalov, P.L.2
Gill, S.J.3
-
76
-
-
0036891689
-
Metal ions and phosphate binding in the H-N-H motif: Crystal structures of the nuclease domain of ColE7/Im7 in complex with a phosphate ion and different divalent metal ions
-
Sui, M. J., Tsai, L. C., Hsia, K, C., Doudeva, L. G., Ku, W. Y., Han, G. W., and Yuan, H. S. (2002) Metal ions and phosphate binding in the H-N-H motif: Crystal structures of the nuclease domain of ColE7/Im7 in complex with a phosphate ion and different divalent metal ions, Protein Sci. 11, 2947-2957.
-
(2002)
Protein Sci.
, vol.11
, pp. 2947-2957
-
-
Sui, M.J.1
Tsai, L.C.2
Hsia, K.C.3
Doudeva, L.G.4
Ku, W.Y.5
Han, G.W.6
Yuan, H.S.7
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