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Calorimetric study of the effect of increasing concentrations of glycerol and ethylene glycol on the thermodynamics of saccharide binding to concanavalin A, interpreted in terms of osmotic stress and the differential uptake of water molecules in the binding process. There are other ways of interpreting the data, as DSC data in the same paper showing increased thermal stability of the protein in the presence of glycerol and ethylene glycol indicate that these molecules may bind directly to concanavalin A, thereby acting as simple non-specific inhibitors to saccharide binding
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Probing the contribution of internal cavities to the volume change of protein unfolding under pressure
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Studies with Staphylococcal nuclease mutants indicate that loss of internal void volume as a result of unfolding is the major factor involved in pressure denaturation, and that neither electrostriction nor hydration changes contribute significantly
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Is the molten globule a third thermodynamic state of protein? The example of α-lactalbumin
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•] reaching opposite conclusions on the thorny issue of whether the 'molten globule' can be considered a distinct state (rather than a heterogeneous mix of conformational states somewhere between 'folded' and 'unfolded')
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•] reaching opposite conclusions on the thorny issue of whether the 'molten globule' can be considered a distinct state (rather than a heterogeneous mix of conformational states somewhere between 'folded' and 'unfolded').
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Illustrating how even minimal sequence changes - such as the amino-terminal methionine residue frequently incorporated inadvertently in recombinant proteins expressed in E. coli - can alter significantly the thermodynamics (and kinetics) of the protein's stability and folding
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Chaudhuri TK, Horii K, Yoda T, Arai M, Nagata S, Terada TP, Uchiyama H, Ikura T, Tsumoto K, Kataoka Het al. Effect of the extra N-terminal methionine residue on the stability and folding of recombinant α-lactalbumin expressed in Escherichia coli. J Mol Biol. 285:1999;1179-1194. Illustrating how even minimal sequence changes - such as the amino-terminal methionine residue frequently incorporated inadvertently in recombinant proteins expressed in E. coli - can alter significantly the thermodynamics (and kinetics) of the protein's stability and folding.
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•]) examining carefully the effects of mutations at protein-protein interfaces, illustrating how difficult it still is to rationalise the thermodynamics of such changes, even when detailed structural information is available. Water molecules fill available voids to optimise close packing
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•]) examining carefully the effects of mutations at protein-protein interfaces, illustrating how difficult it still is to rationalise the thermodynamics of such changes, even when detailed structural information is available. Water molecules fill available voids to optimise close packing.
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p, but are probably insufficient to explain significant deviations from data obtained using empirical surface area models
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Residues involved in dynamic conformational heterogeneity in native proteins are identified by a new NMR technique, also giving novel information about the dynamics of buried water molecules
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Baxter NJ, Hosszu LLP, Waltho JP, Williamson MP Characterisation of low free-energy excited states of folded proteins. J Mol Biol. 284:1998;1625-1639. Residues involved in dynamic conformational heterogeneity in native proteins are identified by a new NMR technique, also giving novel information about the dynamics of buried water molecules.
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Temperature dependence of intramolecular dynamics of the basic leucine zipper of GCN4: Implications for the entropy of association with DNA
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Bracken C, Carr PA, Cavanagh J, Palmer AG Temperature dependence of intramolecular dynamics of the basic leucine zipper of GCN4: implications for the entropy of association with DNA. J Mol Biol. 285:1999;2133-2146.
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Enzyme specificity under dynamic control: A normal mode analysis of α-lytic protease
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Miller DW, Agard DA Enzyme specificity under dynamic control: a normal mode analysis of α-lytic protease. J Mol Biol. 286:1999;267-278.
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Entropy-enthalpy compensation: Conformational fluctuation and induced-fit
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Qian H Entropy-enthalpy compensation: conformational fluctuation and induced-fit. J Chem Phys. 109:1998;10015-10017.
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Qian, H.1
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Baseline length and automated fitting of denaturation data
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A cautionary tale - deficiency of data points in baseline regions of denaturation curves can lead to erroneous estimates of thermodynamic data, especially when automated methods are used
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Allen DL, Pielak GJ Baseline length and automated fitting of denaturation data. Protein Sci. 7:1998;1262-1263. A cautionary tale - deficiency of data points in baseline regions of denaturation curves can lead to erroneous estimates of thermodynamic data, especially when automated methods are used.
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Protein Sci
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Allen, D.L.1
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The calorimetric criterion for a two-state process revisited
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Zhou Y, Hall CK, Karplus M The calorimetric criterion for a two-state process revisited. Protein Sci. 8:1999;1064-1074.
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Probing the 'two-pronged plug two-holed socket' model for the mechanism of binding of Src SH2 domain to phosphotyrosyl peptides: A thermodynamic study
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A recent example of the well-known role of buffer ionisation heats in calorimetric measurements where hydrogen ion association/dissociation is involved
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Bradshaw JM, Grucza RA, Ladbury JE, Waksman G Probing the 'two-pronged plug two-holed socket' model for the mechanism of binding of Src SH2 domain to phosphotyrosyl peptides: a thermodynamic study. Biochemistry. 37:1998;9083-9090. A recent example of the well-known role of buffer ionisation heats in calorimetric measurements where hydrogen ion association/dissociation is involved.
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Bradshaw, J.M.1
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Thermodynamic analysis of protein interactions with biosensor technology
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Illustrating the use of BIAcore measurements at different temperatures to estimate equilibrium thermodynamic and kinetic activation parameters, taking lysozyme-antibody complexes as a model. Contains possible misconceptions regarding complementarity with calorimetric measurements
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Roos H, Karlsson R, Nilshans H, Persson A Thermodynamic analysis of protein interactions with biosensor technology. J Mol Recognit. 11:1998;204-210. Illustrating the use of BIAcore measurements at different temperatures to estimate equilibrium thermodynamic and kinetic activation parameters, taking lysozyme-antibody complexes as a model. Contains possible misconceptions regarding complementarity with calorimetric measurements.
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Roos, H.1
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Thermodynamic analysis of antigen-antibody binding using biosensor measurements at different temperatures
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Zeder-Lutz G, Zuber E, Witz J, Van Regenmortel MHV Thermodynamic analysis of antigen-antibody binding using biosensor measurements at different temperatures. Anal Biochem. 246:1997;123-132.
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Significant discrepancies between van't Hoff and calorimetric enthalpies. III
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Liu Y, Sturtevant JM Significant discrepancies between van't Hoff and calorimetric enthalpies. III. Biophys Chem. 64:1997;121-126.
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A thermodynamic study of the binding of linear and cyclic oligosaccharides to the maltodextrin-binding protein of Escherichia coli
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ITC measurements of protein-carbohydrate interactions. For cyclic polysaccharides (β-cyclodextrin) there is reasonable consistency between calorimetric and van't Hoff enthalpies of binding over the experimental temperature range. This is less true for linear sugars, and may be related to anomeric equilibria in solutions of these molecules
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Thomson J, Liu Y, Sturtevant JM, Quiocho FA A thermodynamic study of the binding of linear and cyclic oligosaccharides to the maltodextrin-binding protein of Escherichia coli. Biophys Chem. 70:1998;101-108. ITC measurements of protein-carbohydrate interactions. For cyclic polysaccharides (β-cyclodextrin) there is reasonable consistency between calorimetric and van't Hoff enthalpies of binding over the experimental temperature range. This is less true for linear sugars, and may be related to anomeric equilibria in solutions of these molecules.
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Biophys Chem
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Thomson, J.1
Liu, Y.2
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Single molecule force spectroscopy of spectrin repeats: Low unfolding forces in helix bundles
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•]) in the mechanical manipulation of single protein molecules and the way this can be used to measure directly the forces necessary for unfolding or protein-protein interaction
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•]) in the mechanical manipulation of single protein molecules and the way this can be used to measure directly the forces necessary for unfolding or protein-protein interaction.
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Rief, M.1
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Direct force measurements of insulin monomer-monomer interactions
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•]) in the mechanical manipulation of single protein molecules and the way this can be used to measure directly the forces necessary for unfolding or protein-protein interaction
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•]) in the mechanical manipulation of single protein molecules and the way this can be used to measure directly the forces necessary for unfolding or protein-protein interaction.
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Biochemistry
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Yip, C.M.1
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