-
1
-
-
0036213311
-
The chaperonin genes of jakobid and jakobid-like flagellates: Implications for eukaryotic evolution
-
Archibald JM, O'Kelly CJ, Doolittle WF (2002) The chaperonin genes of jakobid and jakobid-like flagellates: Implications for eukaryotic evolution. Mol Biol Evol 19:422-431
-
(2002)
Mol Biol Evol
, vol.19
, pp. 422-431
-
-
Archibald, J.M.1
O'Kelly, C.J.2
Doolittle, W.F.3
-
2
-
-
0028895417
-
Exon recognition in vertebrate splicing
-
Berget SM (1995) Exon recognition in vertebrate splicing. J Biol Chem 270:2411-2414
-
(1995)
J Biol Chem
, vol.270
, pp. 2411-2414
-
-
Berget, S.M.1
-
3
-
-
0034161419
-
Exonic splicing enhancers: Mechanism of action, diversity and role in human genetic diseases
-
Blencowe BJ (2000) Exonic splicing enhancers: mechanism of action, diversity and role in human genetic diseases. Trends Biochem Sci 25:106-110
-
(2000)
Trends Biochem Sci
, vol.25
, pp. 106-110
-
-
Blencowe, B.J.1
-
4
-
-
0025810123
-
Intron phylogeny: A new hypothesis
-
Cavalier-Smith T (1991) Intron phylogeny: A new hypothesis. Trends Genet 7:145-148
-
(1991)
Trends Genet
, vol.7
, pp. 145-148
-
-
Cavalier-Smith, T.1
-
5
-
-
0036078675
-
Fourfold faster rate of genome re-arrangement in nematodes than in Drosophila
-
Coghlan A, Wolfe KH (2002) Fourfold faster rate of genome re-arrangement in nematodes than in Drosophila. Genome Res 12:857-867
-
(2002)
Genome Res
, vol.12
, pp. 857-867
-
-
Coghlan, A.1
Wolfe, K.H.2
-
6
-
-
2242464840
-
The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins
-
Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM, Harafuji N, Hastings KE, Ho I, Hotta K, Huang W, Kawashima T, Lemaire P, Martinez D, Meinertzhagen IA, Necula S, Nonaka M, Putnam N, Rash S, Saiga H, Satake M, Terry A, Yamada L, Wang HG, Awazu S, Azumi K, Boore J, Branno M, Chin-Bow S, DeSantis R, Doyle S, Francino P, Keys DN, Haga S, Hayashi H, Hino K, Imai KS, Inaba K, Kano S, Kobayashi K, Kobayashi M, Lee BI, Makabe KW, Manohar C, Matassi G, Medina M, Mochizuki Y, Mount S, Morishita T, Miura S, Nakayama A, Nishizaka S, Nomoto H, Ohta F, Oishi K, Rigoutsos I, Sano M, Sasaki A, Sasakura Y, Shoguchi E, Shin-i T, Spagnuolo A, Stainier D, Suzuki MM, Tassy O, Takatori N, Tokuoka M, Yagi K, Yoshizaki F, Wada S, Zhang C, Hyatt PD, Larimer F, Detter C, Doggett N, Glavina T, Hawkins T, Richardson P, Lucas S, Kohara Y, Levine M, Satoh N, Rokhsar DS (2002) The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science 298:2157-2167
-
(2002)
Science
, vol.298
, pp. 2157-2167
-
-
Dehal, P.1
Satou, Y.2
Campbell, R.K.3
Chapman, J.4
Degnan, B.5
De Tomaso, A.6
Davidson, B.7
Di Gregorio, A.8
Gelpke, M.9
Goodstein, D.M.10
Harafuji, N.11
Hastings, K.E.12
Ho, I.13
Hotta, K.14
Huang, W.15
Kawashima, T.16
Lemaire, P.17
Martinez, D.18
Meinertzhagen, I.A.19
Necula, S.20
Nonaka, M.21
Putnam, N.22
Rash, S.23
Saiga, H.24
Satake, M.25
Terry, A.26
Yamada, L.27
Wang, H.G.28
Awazu, S.29
Azumi, K.30
Boore, J.31
Branno, M.32
Chin-Bow, S.33
DeSantis, R.34
Doyle, S.35
Francino, P.36
Keys, D.N.37
Haga, S.38
Hayashi, H.39
Hino, K.40
Imai, K.S.41
Inaba, K.42
Kano, S.43
Kobayashi, K.44
Kobayashi, M.45
Lee, B.I.46
Makabe, K.W.47
Manohar, C.48
Matassi, G.49
Medina, M.50
Mochizuki, Y.51
Mount, S.52
Morishita, T.53
Miura, S.54
Nakayama, A.55
Nishizaka, S.56
Nomoto, H.57
Ohta, F.58
Oishi, K.59
Rigoutsos, I.60
Sano, M.61
Sasaki, A.62
Sasakura, Y.63
Shoguchi, E.64
Shin-I, T.65
Spagnuolo, A.66
Stainier, D.67
Suzuki, M.M.68
Tassy, O.69
Takatori, N.70
Tokuoka, M.71
Yagi, K.72
Yoshizaki, F.73
Wada, S.74
Zhang, C.75
Hyatt, P.D.76
Larimer, F.77
Detter, C.78
Doggett, N.79
Glavina, T.80
Hawkins, T.81
Richardson, P.82
Lucas, S.83
Kohara, Y.84
Levine, M.85
Satoh, N.86
Rokhsar, D.S.87
more..
-
7
-
-
0029906594
-
Intron positions correlate with module boundaries in ancient proteins
-
de Souza SJ, Long M, Schoenbach L, Roy SW, Gilbert W (1996) Intron positions correlate with module boundaries in ancient proteins. Proc Natl Acad Sci USA 93:14632-14636
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 14632-14636
-
-
De Souza, S.J.1
Long, M.2
Schoenbach, L.3
Roy, S.W.4
Gilbert, W.5
-
8
-
-
0036017378
-
Characterization of the gene conversions between the multigene family members of the yeast genome
-
Drouin G (2002) Characterization of the gene conversions between the multigene family members of the yeast genome. J Mol Evol 55:14-23
-
(2002)
J Mol Evol
, vol.55
, pp. 14-23
-
-
Drouin, G.1
-
9
-
-
0035313034
-
Why do genes have introns? Recombination might add a new piece to the puzzle
-
Duret L (2001) Why do genes have introns? Recombination might add a new piece to the puzzle. Trends Genet 17:172-175
-
(2001)
Trends Genet
, vol.17
, pp. 172-175
-
-
Duret, L.1
-
10
-
-
0030927867
-
Searching for regulatory elements in human noncoding sequences
-
Duret L, Bucher P (1997) Searching for regulatory elements in human noncoding sequences. Curr Opin Struct Biol 7:399-406
-
(1997)
Curr Opin Struct Biol
, vol.7
, pp. 399-406
-
-
Duret, L.1
Bucher, P.2
-
11
-
-
0030464460
-
SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
-
Galtier N, Gouy M, Gautier C (1996) SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12:543-548
-
(1996)
Comput Appl Biosci
, vol.12
, pp. 543-548
-
-
Galtier, N.1
Gouy, M.2
Gautier, C.3
-
14
-
-
0008234549
-
Alternative splicing of human genes: More the rule than the exception?
-
Hanke J, Brett D, Zastrow I, Aydin A, Delbruck S, Lehmann G, Luft F, Reich J, Bork P (1999) Alternative splicing of human genes: more the rule than the exception? Trends Genet 15:389-390
-
(1999)
Trends Genet
, vol.15
, pp. 389-390
-
-
Hanke, J.1
Brett, D.2
Zastrow, I.3
Aydin, A.4
Delbruck, S.5
Lehmann, G.6
Luft, F.7
Reich, J.8
Bork, P.9
-
15
-
-
0033525169
-
A perfect message: RNA surveillance and nonsense-mediated decay
-
Hentze MW, Kulozik AE (1999) A perfect message: RNA surveillance and nonsense-mediated decay. Cell 96:307-310
-
(1999)
Cell
, vol.96
, pp. 307-310
-
-
Hentze, M.W.1
Kulozik, A.E.2
-
16
-
-
0031757669
-
Multiple sequence alignment with Clustal X
-
Jeanmougin F, Thompson JD, Gouy M, Higgins DG, Gibson TJ (1998) Multiple sequence alignment with Clustal X. Trends Biochem Sci 23:403-405
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 403-405
-
-
Jeanmougin, F.1
Thompson, J.D.2
Gouy, M.3
Higgins, D.G.4
Gibson, T.J.5
-
17
-
-
0033832676
-
Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment
-
Kent WJ, Zahler AM (2000) Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment. Genome Res 10:1115-1125
-
(2000)
Genome Res
, vol.10
, pp. 1115-1125
-
-
Kent, W.J.1
Zahler, A.M.2
-
18
-
-
0026575429
-
Duplication-targeted DNA methylation and mutagenesis in the evolution of eukaryotic chromosomes
-
Kricker MC, Drake JW, Radman M (1992) Duplication-targeted DNA methylation and mutagenesis in the evolution of eukaryotic chromosomes. Proc Natl Acad Sci USA 89:1075-1079
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 1075-1079
-
-
Kricker, M.C.1
Drake, J.W.2
Radman, M.3
-
19
-
-
0036221199
-
Codon usage by transposable elements and their host genes in five species
-
Lerat E, Capy P, Biemont C (2002) Codon usage by transposable elements and their host genes in five species. J Mol Evol 54:625-637
-
(2002)
J Mol Evol
, vol.54
, pp. 625-637
-
-
Lerat, E.1
Capy, P.2
Biemont, C.3
-
20
-
-
0027403961
-
Unbiased estimation of the rates of synonymous and nonsynonymous substitution
-
Li WH (1993) Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J Mol Evol 36:96-99
-
(1993)
J Mol Evol
, vol.36
, pp. 96-99
-
-
Li, W.H.1
-
21
-
-
0035949674
-
A computational analysis of sequence features involved in recognition of short introns
-
Lim LP, Burge CB (2001) A computational analysis of sequence features involved in recognition of short introns. Proc Natl Acad Sci USA 98:11193-11198
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 11193-11198
-
-
Lim, L.P.1
Burge, C.B.2
-
22
-
-
0031737389
-
The recent origins of spliceosomal introns revisited
-
Logsdon JM Jr (1998) The recent origins of spliceosomal introns revisited. Curr Opin Genet Dev 8:637-648
-
(1998)
Curr Opin Genet Dev
, vol.8
, pp. 637-648
-
-
Logsdon Jr., J.M.1
-
23
-
-
0035125142
-
mRNA quality control: Marking the message for life or death
-
Lykke-Andersen J (2001) mRNA quality control: Marking the message for life or death. Curr Biol 11:88-91
-
(2001)
Curr Biol
, vol.11
, pp. 88-91
-
-
Lykke-Andersen, J.1
-
24
-
-
0037197986
-
Intron evolution as a population-genetic process
-
Lynch M (2002) Intron evolution as a population-genetic process. Proc Natl Acad Sci USA 99:6118-6123
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 6118-6123
-
-
Lynch, M.1
-
25
-
-
0037387431
-
Messenger RNA surveillance and the evolutionary proliferation of introns
-
Lynch M, Kewalramani A (2003) Messenger RNA surveillance and the evolutionary proliferation of introns. Mol Biol Evol 20:563-571
-
(2003)
Mol Biol Evol
, vol.20
, pp. 563-571
-
-
Lynch, M.1
Kewalramani, A.2
-
27
-
-
0033002455
-
Comparison of Bombyx mori and Helicoverpa armigera cytoplasmic actin genes provides clues to the evolution of actin genes in insects
-
Mange A, Prudhomme JC (1999) Comparison of Bombyx mori and Helicoverpa armigera cytoplasmic actin genes provides clues to the evolution of actin genes in insects. Mol Biol Evol 16:165-172
-
(1999)
Mol Biol Evol
, vol.16
, pp. 165-172
-
-
Mange, A.1
Prudhomme, J.C.2
-
29
-
-
0037133618
-
A spliceosomal intron in Giardia lamblia
-
Nixon JE, Wang A, Morrison HG. McArthur AG, Sogin ML, Loftus BJ, Samuelson J (2002) A spliceosomal intron in Giardia lamblia. Proc Natl Acad Sci USA 99:3701-3705
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 3701-3705
-
-
Nixon, J.E.1
Wang, A.2
Morrison, H.G.3
McArthur, A.G.4
Sogin, M.L.5
Loftus, B.J.6
Samuelson, J.7
-
30
-
-
0031804088
-
Two large families of chemoreceptor genes in the nematodes Caenorhabditis elegans and Caenorhabditis briggsae reveal extensive gene duplication, diversification, movement, and intron loss
-
Robertson HM (1998) Two large families of chemoreceptor genes in the nematodes Caenorhabditis elegans and Caenorhabditis briggsae reveal extensive gene duplication, diversification, movement, and intron loss. Genome Res 8:449-463
-
(1998)
Genome Res
, vol.8
, pp. 449-463
-
-
Robertson, H.M.1
-
31
-
-
0034049664
-
The large srh family of chemoreceptor genes in Caenorhabditis nematodes reveals processes of genome evolution involving large duplications and deletions and intron gains and losses
-
Robertson HM (2000) The large srh family of chemoreceptor genes in Caenorhabditis nematodes reveals processes of genome evolution involving large duplications and deletions and intron gains and losses. Genome Res 10:192-203
-
(2000)
Genome Res
, vol.10
, pp. 192-203
-
-
Robertson, H.M.1
-
33
-
-
0024356449
-
Statistical tests for detecting gene conversion
-
Sawyer S (1989) Statistical tests for detecting gene conversion. Mol Biol Evol 6:526-538
-
(1989)
Mol Biol Evol
, vol.6
, pp. 526-538
-
-
Sawyer, S.1
-
34
-
-
0032953158
-
Gene duplication and gene conversion in the Caenorhabditis elegans genome
-
Semple C, Wolfe KH (1999) Gene duplication and gene conversion in the Caenorhabditis elegans genome. J Mol Evol 48:555-564
-
(1999)
J Mol Evol
, vol.48
, pp. 555-564
-
-
Semple, C.1
Wolfe, K.H.2
-
35
-
-
0035930701
-
Miniature genome in the marine chordate Oikopleura dioica
-
Seo HC, Kube M, Edvardsen RB, Jensen MF, Beck A, Spriet E, Gorsky G, Thompson EM, Lehrach H, Reinhardt R, Chourrout D (2001) Miniature genome in the marine chordate Oikopleura dioica. Science 294:2506
-
(2001)
Science
, vol.294
, pp. 2506
-
-
Seo, H.C.1
Kube, M.2
Edvardsen, R.B.3
Jensen, M.F.4
Beck, A.5
Spriet, E.6
Gorsky, G.7
Thompson, E.M.8
Lehrach, H.9
Reinhardt, R.10
Chourrout, D.11
-
36
-
-
0035827662
-
Molecular patterning of the oikoplastic epithelium of the larvacean tunicate Oikopleura dioica
-
Spada F, Steen H, Troedsson C, Kallesoe T, Spriet E, Mann M, Thompson EM (2001) Molecular patterning of the oikoplastic epithelium of the larvacean tunicate Oikopleura dioica. J Biol Chem 276:20624-20632
-
(2001)
J Biol Chem
, vol.276
, pp. 20624-20632
-
-
Spada, F.1
Steen, H.2
Troedsson, C.3
Kallesoe, T.4
Spriet, E.5
Mann, M.6
Thompson, E.M.7
-
38
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
39
-
-
0031027468
-
Methylation of genomes and genes at the invertebrate-vertebrate boundary
-
Tweedie S, Charlton J, Clark V, Bird A (1997) Methylation of genomes and genes at the invertebrate-vertebrate boundary. Mol Cell Biol 17:1469-1475
-
(1997)
Mol Cell Biol
, vol.17
, pp. 1469-1475
-
-
Tweedie, S.1
Charlton, J.2
Clark, V.3
Bird, A.4
-
40
-
-
0033621045
-
Late changes in spliceosomal introns define clades in vertebrate evolution
-
Venkatesh B, Ning Y, Brenner S (1999) Late changes in spliceosomal introns define clades in vertebrate evolution. Proc Natl Acad Sci USA 96:10267-10271
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 10267-10271
-
-
Venkatesh, B.1
Ning, Y.2
Brenner, S.3
-
41
-
-
0036132976
-
Dynamic, insertion-deletion of introns in deuterostome EF-1 alpha genes
-
Wada H, Kobayashi M, Sato R, Satoh N, Miyasaka H, Shirayama Y (2002) Dynamic, insertion-deletion of introns in deuterostome EF-1 alpha genes. J Mol Evol 54:118-128
-
(2002)
J Mol Evol
, vol.54
, pp. 118-128
-
-
Wada, H.1
Kobayashi, M.2
Sato, R.3
Satoh, N.4
Miyasaka, H.5
Shirayama, Y.6
|