Large-scale comparison of intron positions among animal, plant, and fungal genes

Proceedings of the National Academy of Sciences of the United States of America

Volumn 99, Issue 25, 2002, Pages 16128-16133

  Fedorov, Alexei ^a   Merican, Amir Feisal ^a,b   Gilbert, Walter ^a  

^a HARVARD UNIVERSITY   (United States)

^b UNIVERSITY OF MALAYA   (Malaysia)

Author keywords

Eukaryote; Evolution; Exon; Phase distribution; Prokaryote

Indexed keywords

ANIMAL GENETICS; ARTICLE; EUKARYOTE EVOLUTION; EXON; FUNGAL GENETICS; GENETIC ANALYSIS; INTRON; NONHUMAN; PLANT GENETICS; PRIORITY JOURNAL; PROKARYOTE; SPECIES DIFFERENTIATION;

AMINO ACID SEQUENCE; ANIMAL POPULATION GROUPS; ANIMALS; EVOLUTION, MOLECULAR; FUNGI; GENES; GENES, FUNGAL; GENES, PLANT; INTRONS; MOLECULAR SEQUENCE DATA; PLANTS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SPECIES SPECIFICITY;

ANIMALIA; EUKARYOTA; INSERTION SEQUENCES; PROKARYOTA;

EID: 0037058978     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.242624899     Document Type: Article

References (27)

1. Logsdon, J. M., Jr. (1998) Curr. Opin. Genet. Dev. 8, 637-648.
2. Cavalier-Smith, T. (1985) Nature 315, 283-284.
3. Palmer, J. D. & Logsdon, J. M., Jr. (1991) Curr. Opin. Genet. Dev. 1, 470-477.
4. Dibb, N. J. & Newman, A. J. (1989) EMBO J. 8, 2015-2021.
5. Long, M., de Souza, S. J., Rosenberg, C. & Gilbert, W. (1998) Proc. Natl. Acad. Sci. USA 95, 219-223.
6. Long, M. & Rosenberg, C. (2000) Mol. Biol. Evol. 17, 1789-1796.
7. Gilbert, W. (1978) Nature 271, 501.
8. Doolittle, W. F. (1978) Nature 272, 581-582.
9. de Souza, S. J., Long, M., Klein, R. J., Roy, S., Lin, S. & Gilbert, W. (1998) Proc. Natl. Acad. Sci. USA 9S, 5094-5099.
10. Roy, S. W., Nosaka, M., de Souza, S. J. & Gilbert, W. (1999) Gene 238, 85-91.
11. Fedorov, A., Cao X., Saxonov S., de Souza S., Roy, S. W. & Gilbert, W. (2001) Proc. Natl. Acad. Sci. USA 98, 13177-13182.
12. Gilbert, W. (1987) Cold Spring Harbor Symp. Quant. Biol. 52, 901-905.
13. Kersanach, R., Brinkmann, H., Liaud, M.-F., Zhang, D.-X., Martin, W. & Cerff, R. (1994) Nature 367, 387-389.
14. Shah, D. M., Hightower, R. C. & Meagher, R. B. (1983) J. Mol. Appl. Genet. 2, 111-126.
15. Marchionni, M. & Gilbert, W. (1986) Cell 46, 133-141.
16. Gilbert, W., Marchionni, M. & McKnight, G. (1986) Cell 46, 151-153.
17. Logsdon, J. M., Jr., Tyshenko, M. G., Dixon, C., D.-Jafari, J., Walker, V. K. & Palmer, J. D. (1995) Proc. Natl. Acad. Sci. USA 92, 8507-8511.
18. Nixon, J. E. J., Wang, A., Morrison, H. G., McArthur, A. G., Sogin, M. L., Loftus, B. J. & Samuelson, J. (2002) Proc. Natl. Acad. Sci. USA 99, 3701-3705.
19. Fast, N. M., Roger, A. J., Richardson, C. A. & Doolittle, W. F. (1998) Nucleic Acids Res. 26, 3202-3207.
20. Fast, N. M. & Doolittle, W. F. (1999) Mol. Biochem. Parasitol. 99, 275-278.
21. Archibald, J. M., O'Kelly, C. J. & Doolittle, W. F. (2002) Mol. Biol. Evol. 19, 422-431.
22. Katinka, M. D., Duprat, S., Cornillot, E., Metenier, G., Thomarat, F., Prensier, G., Barbe, V., Peyretaillade, E., Brottier, P., Wincker, P., et al. (2001) Nature 414, 450-453.
23. Saxonov, S., Daizadeh, I., Fedorov, A. & Gilbert, W. (2000) Nucleic Acids. Res. 28, 185-190.
24. Benson, D. A., Boguski, M. S., Lipman, D. J., Ostell, J., Ouellette, B. F., Rapp, B. A. & Wheeler, D. L. (1999) Nucleic Acids Res. 27, 12-17.
25. Stoltzfus, A., Logsdon, J. M., Palmer, J. D. & Doolittle, W. F. (1997) Proc. Natl. Acad. Sci. USA 94, 10739-10744.
26. Endo, T., Fedorov, A., de Souza, S. J. & Gilbert, W. (2002) Mol. Biol. Evol. 19, 521-525.
27. Karlin, S. & Burge, C. (1995) Trends Genet. 11, 283-290.