The pattern of intron loss

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 3, 2005, Pages 713-718

  Roy, Scott W ^a   Gilbert, Walter ^a  

^a HARVARD UNIVERSITY   (United States)

Author keywords

Evolution; Genome evolution

Indexed keywords

MESSENGER RNA; RNA DIRECTED DNA POLYMERASE;

ALTERNATIVE RNA SPLICING; ANOPHELES GAMBIAE; ARABIDOPSIS; ARTICLE; CAENORHABDITIS ELEGANS; DROSOPHILA MELANOGASTER; GENE CONVERSION; INTRON; MOLECULAR EVOLUTION; MUTATION; NONHUMAN; ORTHOLOGY; PLASMODIUM; PRIORITY JOURNAL; PROBABILITY; SCHIZOSACCHAROMYCES POMBE;

3' FLANKING REGION; ANIMALS; EUKARYOTIC CELLS; EVOLUTION, MOLECULAR; GENE CONVERSION; GENOME; HUMANS; INTRONS; MODELS, GENETIC; RNA SPLICING; RNA-DIRECTED DNA POLYMERASE; SEQUENCE DELETION;

ANOPHELES GAMBIAE; ARABIDOPSIS; CAENORHABDITIS ELEGANS; DROSOPHILA MELANOGASTER; EUKARYOTA; FUNGI; MELANOGASTER; NEMATODA; SCHIZOSACCHAROMYCES POMBE;

EID: 14144251257     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0408274102     Document Type: Article

References (41)

1. Sakurai, A., Fujimori, S., Kochiwa, H., Kitamura-Abe, S., Washio, T., Saito, R., Carninci, P., Hayashizaki, Y. & Tomita, M. (2002) Gene 300, 89-95.
2. Mourier, T. & Jeffares, D. C. (2003) Science 300, 1393.
3. Fedorov, A., Suboch, G., Bujakov, M. & Fedorova, L. (1992) Nucleic Acids Res. 20, 2553-2557.
4. Long, M., Rosenberg, C. & Gilbert, W. (1995) Proc. Natl. Acad. Sci. USA 92, 12495-12499.
5. Long, M., de Souza, S. J., Rosenberg, C. & Gilbert, W. (1998) Proc. Natl. Acad. Sci. USA 95, 219-223.
6. Fedorov, A., Fedorova, L., Starshenko, V., Filatov, V. & Grigor'ev, E. (1998) J. Mol. Evol. 46, 263-271.
7. Long, M. & Rosenberg, C. (2000) Mol. Biol. Evol. 17, 1789-1796.
8. Wolf, Y. I., Kondrashov, F. A. & Koonin, E. V. (2001) Trends Genet. 16, 333-334.
9. Roy, S. W., Lewis, B. P., Fedorov, A. & Gilbert, W. (2001) Trends Genet. 17, 496-501.
10. Bernstein, L. B., Mount, S. M. & Weiner, A. M. (1983) Cell 32, 461-472.
11. Lewin, R. (1983) Science 219, 1052-1054.
12. Weiner, A. M. (1986) Annu. Rev. Biochem. 55, 631-661.
13. Fink, G. R. (1987) Cell 49, 5-6.
14. Long, M. & Langley, C. H. (1993) Science 260, 91-95.
15. Derr, L. K. (1998) Genetics 148, 937-945.
16. Fedorova, L. & Fedorov, A. (2003) Genetica (The Hague) 118, 123-131.
17. Rogozin, I. B., Wolf, Y. I., Sorokin, A. V., Mirkin, B. G. & Koonin, E. V. (2003) Curr. Biol. 13, 1512-1517.
18. Aguinaldo, A. M., Turbeville, J. M., Linford, L. S., Rivera, M. C., Garey, J. R., Raff, R. A. & Lake, J. A. (1997) Nature 387, 489-493.
19. Knoll, A. H. & Carroll, S. B. (1999) Science 284, 2129-2137.
20. Wolf, Y. I., Rogozin, I. B. & Koonin, E. V. (2004) Genome Res. 14, 29-36.
21. Frugoli, J. A., McPeak, M. A., Thomas, T. L. & McClung, C. R. (1998) Genetics 149, 355-365.
22. Wada, H., Kobayashi, M., Sato, R., Satoh, N., Miyasaka, H. & Shirayama, Y. (2002) J. Mol. Evol. 54, 118-128.
23. Gilbert, W. (1987) Cold Spring Harbor Symp. Quant. Biol. 52, 901-905.
24. Patthy, L. (1999) Gene 238, 103-114.
25. de Souza, S. J., Long, M., Schoenbach, L., Roy, S. W. & Gilbert, W. (1996) Proc. Natl. Acad. Sci. USA 93, 14632-14636.
26. Roy, S. W. (2003) Genetica (The Hague) 118, 251-266.
27. Dibb, N. J. & Newman, A. J. (1989) EMBO J. 8, 2015-2021.
28. Tarrio, R., Rodriguez-Trelles, F. & Ayala, F. J. (2003) Proc. Natl. Acad. Sci. USA 100, 6580-6583.
29. Sverdlov, A. V., Rogozin, I. B., Babenko, V. N. & Koonin, E. V. (2003) Curr. Biol. 13, 2170-2174.
30. Sadusky, T., Newman, A. J. & Dibb, N. J. (2004) Curr. Biol. 14, 505-509.
31. Qiu, W. G., Schisler, N. & Stoltzfus, A. (2004) Mol. Biol. Evol. 21, 1252-1263.
32. Coghlan, A. & Wolfe, K. H. (2004) Proc. Natl. Acad. Sci. USA 101, 11362-11367.
33. Paquette, S. M., Bak, S. & Feyereisen, R. (2000) DNA Cell Biol. 19, 307-317.
34. Logsdon, J. M., Jr. (1998) Curr. Opin. Genet. Dev. 8, 637-648.
35. Lynch, M. (2002) Proc. Natl. Acad. Sci. USA 99, 6118-6123.
36. Sverdlov, A. V., Babenko, V. N., Rogozin, I. B. & Koonin, E. V. (2004) Gene 338, 85-91.
37. Banyai, L. & Patthy, L. (2004) FEBS Lett. 565, 127-132.
38. Cho, S., Jin, S. W., Cohen, A. & Ellis, R. E. (2004) Genome Res. 14, 1207-1220.
39. Llopart, A., Comeron, J. M., Brunet, F. G., Lachaise, D. & Long, M. (2002) Proc. Natl. Acad. Sci. USA 99, 8121-8126.
40. Nielsen, C. B., Friedman, B., Birren, B., Burge, C. B. & Galagan, J. E. (2004) PloS Biol. 2, e422.
41. Kent, W. J. & Zahler, A. M. (2000) Genome Res. 10, 1115-1125.