메뉴 건너뛰기




Volumn 169, Issue 3, 2005, Pages 1521-1527

Insertion/deletion and nucleotide polymorphism data reveal constraints in Drosophila melanogaster introns and intergenic regions

Author keywords

[No Author keywords available]

Indexed keywords

SPACER DNA;

EID: 17444402039     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: 10.1534/genetics.104.037689     Document Type: Article
Times cited : (40)

References (31)
  • 1
    • 0036469913 scopus 로고    scopus 로고
    • The connection between transcription and genomic instability
    • AGUILERA, A., 2002 The connection between transcription and genomic instability. EMBO J. 21: 195-201.
    • (2002) EMBO J. , vol.21 , pp. 195-201
    • Aguilera, A.1
  • 2
    • 0034883255 scopus 로고    scopus 로고
    • Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences
    • BERGMAN, C. M., and M. KREITMAN, 2001 Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences. Genome Res. 11: 1335-1345.
    • (2001) Genome Res. , vol.11 , pp. 1335-1345
    • Bergman, C.M.1    Kreitman, M.2
  • 3
    • 0036900274 scopus 로고    scopus 로고
    • Patterns of insertion and deletion in contrasting chromatin domains
    • BLUMENSTIEL, J. P., D. L. HARTL and E. R. LOZOWSKV, 2002 Patterns of insertion and deletion in contrasting chromatin domains. Mol. Biol. Evol. 19: 2211-2225.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 2211-2225
    • Blumenstiel, J.P.1    Hartl, D.L.2    Lozowskv, E.R.3
  • 4
    • 0141593581 scopus 로고    scopus 로고
    • Compensatory evolution of a precursor messenger RNA secondary structure in the Drosophila melanogaster Adh gene
    • CHEN, Y., and W. STEPHAN, 2003 Compensatory evolution of a precursor messenger RNA secondary structure in the Drosophila melanogaster Adh gene. Proc. Natl. Acad. Sci. USA 100: 11499-11504.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 11499-11504
    • Chen, Y.1    Stephan, W.2
  • 5
    • 3843068862 scopus 로고    scopus 로고
    • Selective and mutational patterns associated with gene expression in humans: Influences on synonymous composition and intron presence
    • COMERON, J. M., 2004 Selective and mutational patterns associated with gene expression in humans: influences on synonymous composition and intron presence. Genetics 167: 1293-1304.
    • (2004) Genetics , vol.167 , pp. 1293-1304
    • Comeron, J.M.1
  • 6
    • 0033767383 scopus 로고    scopus 로고
    • The correlation between intron length and recombination in Drosophila: Dynamic equilibrium between mutational and selective forces
    • COMERON, J. M., and M. KREITMAN, 2000 The correlation between intron length and recombination in Drosophila: dynamic equilibrium between mutational and selective forces. Genetics 156: 1175-1190.
    • (2000) Genetics , vol.156 , pp. 1175-1190
    • Comeron, J.M.1    Kreitman, M.2
  • 7
    • 0026660667 scopus 로고
    • Repair of UV-induced (6-4) photoproducts measured in individual genes in the Drosophila embryonic Kc cell line
    • DE COCK, J. G., A. VAN HOFFEN, J. WIJNANDS, G. MOLENAAR, P. H. LOHMAN et al., 1992 Repair of UV-induced (6-4) photoproducts measured in individual genes in the Drosophila embryonic Kc cell line. Nucleic Acids Res. 20: 4789-4793.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 4789-4793
    • De Cock, J.G.1    Van Hoffen, A.2    Wijnands, J.3    Molenaar, G.4    Lohman, P.H.5
  • 8
    • 18744395183 scopus 로고    scopus 로고
    • Numerous potentially functional but non-genic conserved sequences on human chromosome 21
    • DERMITZAKIS, E. T., A. REYMOND, R. LYLE, N. SCAMUFFA, C. UCLA et al., 2002 Numerous potentially functional but non-genic conserved sequences on human chromosome 21. Nature 420: 578-582.
    • (2002) Nature , vol.420 , pp. 578-582
    • Dermitzakis, E.T.1    Reymond, A.2    Lyle, R.3    Scamuffa, N.4    Ucla, C.5
  • 9
    • 0037372327 scopus 로고    scopus 로고
    • A significant fraction of conserved noncoding DNA in human and mouse consists of predicted matrix attachment regions
    • GLAZKO, G. V., E. V. KOONIN, I. B. ROGOZIN and S. A. SHABALINA, 2003 A significant fraction of conserved noncoding DNA in human and mouse consists of predicted matrix attachment regions. Trends Genet. 19: 119-124.
    • (2003) Trends Genet. , vol.19 , pp. 119-124
    • Glazko, G.V.1    Koonin, E.V.2    Rogozin, I.B.3    Shabalina, S.A.4
  • 10
    • 0347065347 scopus 로고    scopus 로고
    • Demography and natural selection have shaped genetic variation in Drosophila melanogaster: A multi-locus approach
    • GLINKA, S., L. OMETTO, S. MOUSSET, W. STEPHAN and D. DE LORENZO, 2003 Demography and natural selection have shaped genetic variation in Drosophila melanogaster: a multi-locus approach. Genetics 165: 1269-1278.
    • (2003) Genetics , vol.165 , pp. 1269-1278
    • Glinka, S.1    Ometto, L.2    Mousset, S.3    Stephan, W.4    De Lorenzo, D.5
  • 11
    • 0037380022 scopus 로고    scopus 로고
    • Transcription-associated mutational asymmetry in mammalian evolution
    • GREEN, P., B. EWING, W. MILLER, P. J. THOMAS, NISC COMPARATIVE SEQUENCING PROGRAM et al., 2003 Transcription-associated mutational asymmetry in mammalian evolution. Nat. Genet. 33: 514-517.
    • (2003) Nat. Genet. , vol.33 , pp. 514-517
    • Green, P.1    Ewing, B.2    Miller, W.3    Thomas, P.J.4
  • 12
    • 0008234549 scopus 로고    scopus 로고
    • Alternative splicing of human genes: More the rule than the exception?
    • HANKE, J., D. BRETT, I. ZASTROW, A. AYDIN, S. DELBRÜK et al., 1999 Alternative splicing of human genes: More the rule than the exception? Trends Genet. 15: 389-390.
    • (1999) Trends Genet. , vol.15 , pp. 389-390
    • Hanke, J.1    Brett, D.2    Zastrow, I.3    Aydin, A.4    Delbrük, S.5
  • 13
    • 1542723471 scopus 로고    scopus 로고
    • A variable dinucleotide repeat in the CFTR gene contributes to phenotype diversity by forming RNA secondary structures that alter splicing
    • HEFFERON, T. W., J. D. GROMAN, C. E. YURK and G. R. CUTTING, 2004 A variable dinucleotide repeat in the CFTR gene contributes to phenotype diversity by forming RNA secondary structures that alter splicing. Proc. Natl. Acad. Sci. USA 101: 3504-3509.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 3504-3509
    • Hefferon, T.W.1    Groman, J.D.2    Yurk, C.E.3    Cutting, G.R.4
  • 14
    • 10344256696 scopus 로고    scopus 로고
    • Patterns of polymorphism and divergence from noncoding sequences of Drosophila melanogaster and D. simulans: Evidence for nonequilibrium processes
    • KERN, A. D., and D. J. BEGUN, 2005 Patterns of polymorphism and divergence from noncoding sequences of Drosophila melanogaster and D. simulans: evidence for nonequilibrium processes. Mol. Biol. Evol. 22: 51-62.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 51-62
    • Kern, A.D.1    Begun, D.J.2
  • 15
    • 0028826670 scopus 로고
    • Evolutionary dynamics of the enhancer region of even-skipped in Drosophila
    • LUDWIG, M. Z., and M. KREITMAN, 1995 Evolutionary dynamics of the enhancer region of even-skipped in Drosophila. Mol. Biol. Evol. 12: 1002-1011.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 1002-1011
    • Ludwig, M.Z.1    Kreitman, M.2
  • 16
    • 0031889035 scopus 로고    scopus 로고
    • Functional analysis of eve stripe 2 enhancer evolution in Drosophila: Rules governing conservation and change
    • LUDWIG, M. Z., N. H. PATEL and M. KREITMAN, 1998 Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change. Development 125: 949-958.
    • (1998) Development , vol.125 , pp. 949-958
    • Ludwig, M.Z.1    Patel, N.H.2    Kreitman, M.3
  • 17
    • 0026657738 scopus 로고
    • Splicing signals in Drosophila: Intron size, information content, and consensus sequences
    • MOUNT, S. M., C. BURKS, G. HERTZ, G. D. STORMO, O. WHITE et al., 1992 Splicing signals in Drosophila: intron size, information content, and consensus sequences. Nucleic Acids Res. 20: 4255-4262.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 4255-4262
    • Mount, S.M.1    Burks, C.2    Hertz, G.3    Stormo, G.D.4    White, O.5
  • 18
    • 0347361692 scopus 로고    scopus 로고
    • Selective constraints on intron evolution in Drosophila
    • PARSCH, J., 2003 Selective constraints on intron evolution in Drosophila. Genetics 165: 1843-1851.
    • (2003) Genetics , vol.165 , pp. 1843-1851
    • Parsch, J.1
  • 19
    • 0031891484 scopus 로고    scopus 로고
    • High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups
    • PETROV, D. A., and D. L. HARTL, 1998 High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups. Mol. Biol. Evol. 15: 293-302.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 293-302
    • Petrov, D.A.1    Hartl, D.L.2
  • 20
    • 0036862056 scopus 로고    scopus 로고
    • How intron splicing affects the deletion and insertion profile in Drosophila melanogaster
    • PTAK, S. E., and D. A. PETROV, 2002 How intron splicing affects the deletion and insertion profile in Drosophila melanogaster. Genetics 162: 1233-1244.
    • (2002) Genetics , vol.162 , pp. 1233-1244
    • Ptak, S.E.1    Petrov, D.A.2
  • 21
    • 0028971143 scopus 로고
    • MatInd and MatInspector: New fast and versatile tools for detection of consensus matches in nucleotide sequence data
    • QUANDT, K., K. FRECH, H. KARAS, E. WINGENDER and T. WERNER, 1995 MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Res. 23: 4878-4884.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 4878-4884
    • Quandt, K.1    Frech, K.2    Karas, H.3    Wingender, E.4    Werner, T.5
  • 22
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • ROZAS, J., J. C. SÁNCHEZ-DELBARRIO, X. MESSEGUER and R. ROZAS, 2003 DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sánchez-Delbarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 23
    • 0036999964 scopus 로고    scopus 로고
    • Molecular population genetics of sequence length diversity in the Adh region of Drosophila pseudoobscura
    • SCHAEFFER, S. W., 2002 Molecular population genetics of sequence length diversity in the Adh region of Drosophila pseudoobscura. Genet. Res. 80: 163-175.
    • (2002) Genet. Res. , vol.80 , pp. 163-175
    • Schaeffer, S.W.1
  • 24
    • 0034710295 scopus 로고    scopus 로고
    • DNA repair in Drosophila: Insights from the Drosophila genome sequence
    • SEKELSKY, J. J., M. H. BRODSKY and K. C. BURTIS, 2000 DNA repair in Drosophila: insights from the Drosophila genome sequence. J. Cell Biol. 150: F31-F36.
    • (2000) J. Cell Biol. , vol.150
    • Sekelsky, J.J.1    Brodsky, M.H.2    Burtis, K.C.3
  • 25
    • 0032848247 scopus 로고    scopus 로고
    • Pattern of selective constraint in C. elegans and C. briggsae genomes
    • SHABALINA, S. A., and A. KONDRASHOV, 1999 Pattern of selective constraint in C. elegans and C. briggsae genomes. Genet. Res. 74: 23-30.
    • (1999) Genet. Res. , vol.74 , pp. 23-30
    • Shabalina, S.A.1    Kondrashov, A.2
  • 26
    • 0028307171 scopus 로고
    • Split genes and RNA splicing
    • SHARP, P. A., 1994 Split genes and RNA splicing. Cell 77: 805-815.
    • (1994) Cell , vol.77 , pp. 805-815
    • Sharp, P.A.1
  • 27
    • 0027963390 scopus 로고
    • Molecular evolution of the metallothionein gene Mtn in the melanogaster species group: Results from Drosophila ananassae
    • STEPHAN, W., V. S. RODRIGUEZ, B. ZHOU and J. PARSCH, 1994 Molecular evolution of the metallothionein gene Mtn in the melanogaster species group: results from Drosophila ananassae. Genetics 138: 135-143.
    • (1994) Genetics , vol.138 , pp. 135-143
    • Stephan, W.1    Rodriguez, V.S.2    Zhou, B.3    Parsch, J.4
  • 28
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • TAJIMA, F., 1983 Evolutionary relationship of DNA sequences in finite populations. Genetics 105: 437-460.
    • (1983) Genetics , vol.105 , pp. 437-460
    • Tajima, F.1
  • 29
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • TAJIMA, F., 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 30
    • 0033976586 scopus 로고    scopus 로고
    • TRANSFAC: An integrated system for gene expression regulation
    • WINGENDER, E., X. CHEN, R. HEHL, H. KARAS, I. LIEBICH et al., 2000 TRANSFAC: an integrated system for gene expression regulation. Nucleic Acids Res. 28: 316-319.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 316-319
    • Wingender, E.1    Chen, X.2    Hehl, R.3    Karas, H.4    Liebich, I.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.