-
1
-
-
0042671357
-
'Pre-mRNA splicing: Awash in a sea of proteins'
-
Jurica, M. S. and Moore, M. J. (2003), 'Pre-mRNA splicing: Awash in a sea of proteins', Mol. Cell, Vol. 12, pp. 5-14.
-
(2003)
Mol. Cell
, vol.12
, pp. 5-14
-
-
Jurica, M.S.1
Moore, M.J.2
-
2
-
-
0344198459
-
'The spliceosome: The most complex macromolecular machine in the cell?'
-
Nilsen, T. W. (2003), 'The spliceosome: The most complex macromolecular machine in the cell?' Bioessays, Vol. 25, pp. 1147-1149.
-
(2003)
Bioessays
, vol.25
, pp. 1147-1149
-
-
Nilsen, T.W.1
-
3
-
-
16344385067
-
'Complex spliceosomal organization ancestral to extant eukaryotes'
-
Collins, L. and Penny, D. (2005), 'Complex spliceosomal organization ancestral to extant eukaryotes', Mol. Biol. Evol., Vol. 22, pp. 1053-1066.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1053-1066
-
-
Collins, L.1
Penny, D.2
-
4
-
-
0025876808
-
'Who's on first? The U1 snRNP-5′ splice site interaction and splicing'
-
Rosbash, M. and Seraphin, B. (1991), 'Who's on first? The U1 snRNP-5′ splice site interaction and splicing', Trends Biochem. Sci., Vol. 16, pp. 187-190.
-
(1991)
Trends Biochem. Sci.
, vol.16
, pp. 187-190
-
-
Rosbash, M.1
Seraphin, B.2
-
5
-
-
0037026523
-
'The U1 snRNP protein U1C recognizes the 5′ splice site in the absence of base pairing'
-
Du, H. and Rosbash, M. (2002), 'The U1 snRNP protein U1C recognizes the 5′ splice site in the absence of base pairing', Nature, Vol. 419, pp. 86-90.
-
(2002)
Nature
, vol.419
, pp. 86-90
-
-
Du, H.1
Rosbash, M.2
-
6
-
-
1942469356
-
'Comparative analysis detects dependencies among the 5′ splice-site positions'
-
Carmel, I., Tal, S., Vig, I. and Ast, G. (2004), 'Comparative analysis detects dependencies among the 5′ splice-site positions', RNA, Vol. 10, pp. 828-840.
-
(2004)
RNA
, vol.10
, pp. 828-840
-
-
Carmel, I.1
Tal, S.2
Vig, I.3
Ast, G.4
-
7
-
-
0028960809
-
'A novel role for a U5 snRNP protein in 3′ splice site selection'
-
Umen, J. G. and Guthrie, C. (1995), 'A novel role for a U5 snRNP protein in 3′ splice site selection', Genes Dev., Vol. 9, pp. 855-868.
-
(1995)
Genes Dev.
, vol.9
, pp. 855-868
-
-
Umen, J.G.1
Guthrie, C.2
-
8
-
-
0030750730
-
'Evidence that U5 snRNP recognizes the 3′ splice site for catalytic step II in mammals'
-
Chiara, M. D., Palandjian, L., Feld Kramer, R. and Reed, R. (1997), 'Evidence that U5 snRNP recognizes the 3′ splice site for catalytic step II in mammals', EMBO J., Vol. 16, pp. 4746-4759.
-
(1997)
EMBO J.
, vol.16
, pp. 4746-4759
-
-
Chiara, M.D.1
Palandjian, L.2
Feld Kramer, R.3
Reed, R.4
-
9
-
-
0023127048
-
'The role of small nuclear ribonucleoprotein particles in pre-mRNA splicing'
-
Maniatis, T. and Reed, R. (1987), 'The role of small nuclear ribonucleoprotein particles in pre-mRNA splicing', Nature, Vol. 325, pp. 673-678.
-
(1987)
Nature
, vol.325
, pp. 673-678
-
-
Maniatis, T.1
Reed, R.2
-
10
-
-
0025836071
-
'A reappraisal of nonconsensus mRNA splice sites'
-
Jackson, I. J. (1991), 'A reappraisal of nonconsensus mRNA splice sites', Nucleic Acids Res., Vol. 19, pp. 3795-3798.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 3795-3798
-
-
Jackson, I.J.1
-
11
-
-
0028366003
-
'Conserved sequences in a class of rare eukaryotic nuclear introns with non-consensus splice sites'
-
Hall, S. L. and Padgett, R. A. (1994), 'Conserved sequences in a class of rare eukaryotic nuclear introns with non-consensus splice sites', J. Mol. Biol., Vol. 239, pp. 357-365.
-
(1994)
J. Mol. Biol.
, vol.239
, pp. 357-365
-
-
Hall, S.L.1
Padgett, R.A.2
-
12
-
-
0032247416
-
'Evolutionary fates and origins of U12-type introns'
-
Burge, C. B., Padgett, R. A. and Sharp, P. A. (1998), 'Evolutionary fates and origins of U12-type introns', Mol. Cell, Vol. 2, pp. 773-785.
-
(1998)
Mol. Cell
, vol.2
, pp. 773-785
-
-
Burge, C.B.1
Padgett, R.A.2
Sharp, P.A.3
-
14
-
-
0027771868
-
'On the ancient nature of introns'
-
Gilbert, W. and Glynias, M. (1993), 'On the ancient nature of introns', Gene, Vol. 135, pp. 137-144.
-
(1993)
Gene
, vol.135
, pp. 137-144
-
-
Gilbert, W.1
Glynias, M.2
-
15
-
-
0031737389
-
'The recent origins of spliceosomal introns revisited'
-
Logsdon, J. M., Jr (1998), 'The recent origins of spliceosomal introns revisited', Curr. Opin. Genet. Dev., Vol. 8, pp. 637-648.
-
(1998)
Curr. Opin. Genet. Dev.
, vol.8
, pp. 637-648
-
-
Logsdon Jr., M.J.1
-
16
-
-
0036888952
-
'The evolution of spliceosomal introns'
-
Lynch, M. and Richardson, A. O. (2002), 'The evolution of spliceosomal introns', Curr. Opin. Genet. Dev., Vol. 12, pp. 701-710.
-
(2002)
Curr. Opin. Genet. Dev.
, vol.12
, pp. 701-710
-
-
Lynch, M.1
Richardson, A.O.2
-
17
-
-
0028043139
-
'Testing the exon theory of genes: The evidence from protein structure'
-
Stoltzfus, A., Spencer, D. F., Zuker, M. et al. (1994), 'Testing the exon theory of genes: The evidence from protein structure', Science, Vol. 265, pp. 202-207.
-
(1994)
Science
, vol.265
, pp. 202-207
-
-
Stoltzfus, A.1
Spencer, D.F.2
Zuker, M.3
-
18
-
-
0030885349
-
'Intron "sliding" And the diversity of intron positions'
-
Stoltzfus, A., Logsdon, J. M., Jr, Palmer, J. D. and Doolittle, W. F. (1997), 'Intron "sliding" and the diversity of intron positions', Proc. Natl Acad. Sci. USA, Vol. 94, pp. 10739-10744.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 10739-10744
-
-
Stoltzfus, A.1
Logsdon Jr., M.J.2
Palmer, J.D.3
Doolittle, W.F.4
-
19
-
-
0029115626
-
'Seven newly discovered intron positions in the triose-phosphate isomerase gene: Evidence for the introns-late theory'
-
Logsdon, J. M., Jr, Tyshenko, M. G., Dixon, C. et al. (1995), 'Seven newly discovered intron positions in the triose-phosphate isomerase gene: Evidence for the introns-late theory', Proc. Natl Acad. Sci. USA, Vol. 92, pp. 8507-8511.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 8507-8511
-
-
Logsdon Jr., M.J.1
Tyshenko, M.G.2
Dixon, C.3
-
20
-
-
0030989167
-
'Exon/intron structure of aldehyde dehydrogenase genes supports the "intronslate" Theory'
-
Rzhetsky, A., Ayala, F. J., Hsu, L. C. et al. (1997), 'Exon/intron structure of aldehyde dehydrogenase genes supports the "intronslate" theory', Proc. Natl Acad. Sci. USA, Vol. 94, pp. 6820-6825.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 6820-6825
-
-
Rzhetsky, A.1
Ayala, F.J.2
Hsu, L.C.3
-
21
-
-
0032574738
-
'Toward a resolution of the introns-early/late debate: Only phase zero introns are correlated with the structure of ancient proteins'
-
de Souza, S. J., Long, M., Klein, R. J. et al. (1998), 'Toward a resolution of the introns-early/late debate: Only phase zero introns are correlated with the structure of ancient proteins', Proc. Natl Acad. Sci. USA, Vol. 95, pp. 5094-5099.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 5094-5099
-
-
de Souza, S.J.1
Long, M.2
Klein, R.J.3
-
22
-
-
0034307433
-
'Intron sliding in conserved gene families'
-
Rogozin, I. B., Lyons-Weiler, J. and Koonin, E. V. (2000), 'Intron sliding in conserved gene families', Trends Genet., Vol. 16, pp. 430-432.
-
(2000)
Trends Genet.
, vol.16
, pp. 430-432
-
-
Rogozin, I.B.1
Lyons-Weiler, J.2
Koonin, E.V.3
-
23
-
-
0037058978
-
'Large-scale comparison of intron positions among animal, plant, and fungal genes'
-
Fedorov, A., Merican, A. F. and Gilbert, W. (2002), 'Large-scale comparison of intron positions among animal, plant, and fungal genes', Proc. Natl Acad. Sci. USA, Vol. 99, pp. 16128-16133.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 16128-16133
-
-
Fedorov, A.1
Merican, A.F.2
Gilbert, W.3
-
24
-
-
0042921194
-
'Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution'
-
Rogozin, I. B., Wolf, Y. I., Sorokin, A. V. et al. (2003), 'Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution', Curr. Biol., Vol. 13, pp. 1512-1517.
-
(2003)
Curr. Biol.
, vol.13
, pp. 1512-1517
-
-
Rogozin, I.B.1
Wolf, Y.I.2
Sorokin, A.V.3
-
25
-
-
13144253092
-
'Molecular evolution: Recent cases of spliceosomal intron gain?'
-
Logsdon, J. M., Jr, Stoltzfus, A. and Doolittle, W. F. (1998), 'Molecular evolution: Recent cases of spliceosomal intron gain?' Curr. Biol., Vol. 8, pp. R560-R563.
-
(1998)
Curr. Biol.
, vol.8
-
-
Logsdon Jr., M.J.1
Stoltzfus, A.2
Doolittle, W.F.3
-
26
-
-
0037202361
-
'On biased distribution of introns in various eukaryotes'
-
Sakurai, A., Fujimori, S., Kochiwa, H. et al. (2002), 'On biased distribution of introns in various eukaryotes', Gene, Vol. 300, pp. 89-95.
-
(2002)
Gene
, vol.300
, pp. 89-95
-
-
Sakurai, A.1
Fujimori, S.2
Kochiwa, H.3
-
27
-
-
0038780670
-
'Eukaryotic intron loss'
-
Mourier, T. and Jeffires, D.C. (2003), 'Eukaryotic intron loss', Science, Vol. 300, p. 1393.
-
(2003)
Science
, vol.300
, pp. 1393
-
-
Mourier, T.1
Jeffires, D.C.2
-
28
-
-
0037795455
-
'Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain'
-
Roy, S. W., Fedorov, A. and Gilbert, W. (2003), 'Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain', Proc. Natl Acad. Sci. USA, Vol. 100, pp. 7158-7162.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 7158-7162
-
-
Roy, S.W.1
Fedorov, A.2
Gilbert, W.3
-
29
-
-
3142749596
-
'Prevalence of intron gain over intron loss in the evolution of paralogous gene families'
-
Babenko, V. N., Rogozin, I. B., Mekhedov, S. L. and Koonin, E. V. (2004), 'Prevalence of intron gain over intron loss in the evolution of paralogous gene families', Nucleic Acids Res., Vol. 32, pp. 3724-3733.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 3724-3733
-
-
Babenko, V.N.1
Rogozin, I.B.2
Mekhedov, S.L.3
Koonin, E.V.4
-
30
-
-
3843113189
-
'Origins of recently gained introns in Caenorhabditis'
-
Coghlan, A. and Wolfe, K. H. (2004), 'Origins of recently gained introns in Caenorhabditis', Proc. Natl Acad. Sci. USA, Vol. 101, pp. 11362-11367.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 11362-11367
-
-
Coghlan, A.1
Wolfe, K.H.2
-
31
-
-
0023649687
-
'Pseudogenes in yeast?'
-
Fink, G. R. (1987), 'Pseudogenes in yeast?', Cell, Vol. 49, pp. 5-6.
-
(1987)
Cell
, vol.49
, pp. 5-6
-
-
Fink, G.R.1
-
32
-
-
0031968001
-
'The involvement of cellular recombination and repair genes in RNA-mediated recombination in Saccharomyces cerevisiae'
-
Derr, L. K. (1998), 'The involvement of cellular recombination and repair genes in RNA-mediated recombination in Saccharomyces cerevisiae', Genetics, Vol. 148, pp. 937-945.
-
(1998)
Genetics
, vol.148
, pp. 937-945
-
-
Derr, L.K.1
-
33
-
-
0036787520
-
'The evolution of single-copy Drosophila nuclear 4f-rnp genes: Spliceosomal intron losses create polymorphic alleles'
-
Feiber, A. L., Rangarajan, J. and Vaughn, J. C. (2002), 'The evolution of single-copy Drosophila nuclear 4f-rnp genes: Spliceosomal intron losses create polymorphic alleles', J. Mol. Evol., Vol. 55, pp. 401-413.
-
(2002)
J. Mol. Evol.
, vol.55
, pp. 401-413
-
-
Feiber, A.L.1
Rangarajan, J.2
Vaughn, J.C.3
-
34
-
-
4143150876
-
'Preferential loss and gain of introns in 3′ portions of genes suggests a reverse-transcription mechanism of intron insertion'
-
Sverdlov, A. V., Babenko, V. N., Rogozin, I. B. and Koonin, E. V. (2004), 'Preferential loss and gain of introns in 3′ portions of genes suggests a reverse-transcription mechanism of intron insertion', Gene, Vol. 338, pp. 85-91.
-
(2004)
Gene
, vol.338
, pp. 85-91
-
-
Sverdlov, A.V.1
Babenko, V.N.2
Rogozin, I.B.3
Koonin, E.V.4
-
35
-
-
0023041417
-
'The triosephosphate isomerase gene from maize: Introns antedate the plant-animal divergence'
-
Marchionni, M. and Gilbert, W. (1986), 'The triosephosphate isomerase gene from maize: Introns antedate the plant-animal divergence', Cell, Vol. 46, pp. 133-141.
-
(1986)
Cell
, vol.46
, pp. 133-141
-
-
Marchionni, M.1
Gilbert, W.2
-
36
-
-
0035211289
-
'Evolution of intron/exon structure of DEAD helicase family genes in Arabidopsis, Caenorhabditis, and Drosephila'
-
Boudet, N., Aubourg, S., Toffano-Nioche, C. et al. (2001), 'Evolution of intron/exon structure of DEAD helicase family genes in Arabidopsis, Caenorhabditis, and Drosephila', Genome Res., Vol. 11, pp. 2101-2114.
-
(2001)
Genome Res.
, vol.11
, pp. 2101-2114
-
-
Boudet, N.1
Aubourg, S.2
Toffano-Nioche, C.3
-
37
-
-
0031941350
-
'Elongation factor-1 alpha occurs as two copies in bees: Implications for phylogenetic analysis of EF-1 alpha sequences in insects'
-
Danforth, B. N. and Ji, S. (1998), 'Elongation factor-1 alpha occurs as two copies in bees: implications for phylogenetic analysis of EF-1 alpha sequences in insects', Mol. Biol. Evol., Vol. 15, pp. 225-235.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 225-235
-
-
Danforth, B.N.1
Ji, S.2
-
38
-
-
10344222940
-
'Phylogenetic mapping of intron positions: A case study of translation initiation factor eIF2gamma'
-
Krauss, V., Pecyna, M., Kurz, K. and Sass, H. (2005), 'Phylogenetic mapping of intron positions: A case study of translation initiation factor eIF2gamma', Mol. Biol. Evol., Vol. 22, pp. 74-84.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 74-84
-
-
Krauss, V.1
Pecyna, M.2
Kurz, K.3
Sass, H.4
-
39
-
-
16444381885
-
'A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes'
-
Koonin, E. V., Fedorova, N. D., Jackson, J. D. et al. (2004), 'A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes', Genome Biol., Vol. 5, p. R7.
-
(2004)
Genome Biol.
, vol.5
-
-
Koonin, E.V.1
Fedorova, N.D.2
Jackson, J.D.3
-
40
-
-
0036846746
-
'The origin and evolution of model organisms'
-
Hedges, S. B. (2002), 'The origin and evolution of model organisms', Nat. Rev. Genet., Vol. 3, pp. 838-849.
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 838-849
-
-
Hedges, S.B.1
-
41
-
-
84959795073
-
'Phylogenetic analysis under Dollo's Law'
-
Farris, J. S. (1977), 'Phylogenetic analysis under Dollo's Law', Syst. Zool., Vol. 26, pp. 77-88.
-
(1977)
Syst. Zool.
, vol.26
, pp. 77-88
-
-
Farris, J.S.1
-
42
-
-
3042548834
-
'The evolutionary gain of spliceosomal introns: Sequence and phase preferences'
-
Qiu, W. G., Schisler, N. and Stoltzfus, A. (2004), 'The evolutionary gain of spliceosomal introns: Sequence and phase preferences', Mol. Biol. Evol., Vol. 21, pp. 1252-1263.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1252-1263
-
-
Qiu, W.G.1
Schisler, N.2
Stoltzfus, A.3
-
43
-
-
13844309569
-
'Complex early genes'
-
Roy, S. W. and Gilbert, W. (2005), 'Complex early genes', Proc. Natl Acad. Sci. USA, Vol. 102, pp. 1986-1991.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 1986-1991
-
-
Roy, S.W.1
Gilbert, W.2
-
44
-
-
0024462103
-
'Evidence that introns arose at proto-splice sites'
-
Dibb, N.J. and Newman, A. J. (1989), 'Evidence that introns arose at proto-splice sites', EMBO J., Vol. 8, pp. 2015-2021.
-
(1989)
EMBO J.
, vol.8
, pp. 2015-2021
-
-
Dibb, N.J.1
Newman, A.J.2
-
45
-
-
0025812574
-
'Proto-splice site model of intron origin'
-
Dibb, N. J. (1991), 'Proto-splice site model of intron origin', J. Theor. Biol., Vol. 151, pp. 405-416.
-
(1991)
J. Theor. Biol.
, vol.151
, pp. 405-416
-
-
Dibb, N.J.1
-
46
-
-
1842535132
-
'Exon junction sequences as cryptic splice sites: Implications for intron origin'
-
Sadusky, T., Newman, A. J. and Dibb, N. J. (2004), 'Exon junction sequences as cryptic splice sites: Implications for intron origin', Curr. Biol., Vol. 14, pp. 505-509.
-
(2004)
Curr. Biol.
, vol.14
, pp. 505-509
-
-
Sadusky, T.1
Newman, A.J.2
Dibb, N.J.3
-
47
-
-
4344639564
-
'Reconstruction of ancestral protosplice sites'
-
Sverdlov, A. V., Rogozin, I. B., Babenko, V. N. and Koonin, E. V. (2004), 'Reconstruction of ancestral protosplice sites', Curr. Biol., Vol. 14, pp. 1505-1508.
-
(2004)
Curr. Biol.
, vol.14
, pp. 1505-1508
-
-
Sverdlov, A.V.1
Rogozin, I.B.2
Babenko, V.N.3
Koonin, E.V.4
-
48
-
-
0031593151
-
'A variable intron distribution in globin genes of Chironomus: Evidence for recent intron gain'
-
Hankeln, T., Friedl, H., Ebersberger, I. et al. (1997), 'A variable intron distribution in globin genes of Chironomus: Evidence for recent intron gain', Gene, Vol. 205, pp. 151-160.
-
(1997)
Gene
, vol.205
, pp. 151-160
-
-
Hankeln, T.1
Friedl, H.2
Ebersberger, I.3
-
49
-
-
0037975529
-
'A new Drosophila spliceosomal intron position is common in plants'
-
Tarrio, R., Rodriguez-Trelles, F. and Ayala, F. J. (2003), 'A new Drosophila spliceosomal intron position is common in plants', Proc. Natl Acad. Sci. USA, Vol. 100, pp. 6580-6583.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 6580-6583
-
-
Tarrio, R.1
Rodriguez-Trelles, F.2
Ayala, F.J.3
-
50
-
-
15944384932
-
'Conservation versus parallel gains in intron evolution'
-
Sverdlov, A. V., Rogozin, I. B., Babenko, V. N. and Koonin, E. V. (2005), 'Conservation versus parallel gains in intron evolution', Nucleic Acids Res., Vol. 33, pp. 1741-1748.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 1741-1748
-
-
Sverdlov, A.V.1
Rogozin, I.B.2
Babenko, V.N.3
Koonin, E.V.4
-
51
-
-
0037133618
-
'A spliceosomal intron in Giardia lamblia'
-
Nixon, J. E., Wang, A., Morrison, H. G. et al. (2002), 'A spliceosomal intron in Giardia lamblia', Proc. Natl Acad. Sci. USA, Vol. 99, pp. 3701-3705.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 3701-3705
-
-
Nixon, J.E.1
Wang, A.2
Morrison, H.G.3
-
52
-
-
0037136554
-
'Eukaryotic evolution: Early origin of canonical introns'
-
Simpson, A. G., MacQuarrie, E. K. and Roger, A. J. (2002), 'Eukaryotic evolution: Early origin of canonical introns', Nature, Vol. 419, p. 270.
-
(2002)
Nature
, vol.419
, pp. 270
-
-
Simpson, A.G.1
MacQuarrie, E.K.2
Roger, A.J.3
-
53
-
-
0036213311
-
'The chaperonin genes of jakobid andjakobid-like flagellates: Implications for eukaryotic evolution'
-
Archibald, J. M., O'Kelly, C. J. and Doolittle, W. F. (2002), 'The chaperonin genes of jakobid andjakobid-like flagellates: Implications for eukaryotic evolution', Mol. Biol. Evol., Vol. 19, pp. 422-431.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 422-431
-
-
Archibald, J.M.1
O'Kelly, C.J.2
Doolittle, W.F.3
-
54
-
-
15444370758
-
'Spliceosomal introns in the deep-branching eukaryote Trichomonas vaginalis'
-
Vanacova, S., Yan, W., Carlton, J. M. and Johnson, P. J. (2005), 'Spliceosomal introns in the deep-branching eukaryote Trichomonas vaginalis', Proc. Natl Acad. Sci. USA, Vol. 102, pp. 4430-4435.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 4430-4435
-
-
Vanacova, S.1
Yan, W.2
Carlton, J.M.3
Johnson, P.J.4
-
55
-
-
0030660580
-
'Gene families: The taxonomy of protein paralogs and chimeras'
-
Henikoff, S., Greene, E. A., Pietrokovski, S. et al. (1997), 'Gene families: The taxonomy of protein paralogs and chimeras', Science, Vol. 278, pp. 609-614.
-
(1997)
Science
, vol.278
, pp. 609-614
-
-
Henikoff, S.1
Greene, E.A.2
Pietrokovski, S.3
-
56
-
-
0036066765
-
'The role of lineage-specific gene family expansion in the evolution of eukaryotes'
-
Lespinet, O., Wolf, Y. I., Koonin, E. V. and Aravind, L. (2002), 'The role of lineage-specific gene family expansion in the evolution of eukaryotes', Genome Res., Vol. 12, pp. 1048-1059.
-
(2002)
Genome Res.
, vol.12
, pp. 1048-1059
-
-
Lespinet, O.1
Wolf, Y.I.2
Koonin, E.V.3
Aravind, L.4
-
57
-
-
0025183708
-
'Basic local alignment search tool'
-
Altschul, S. F., Gish, W., Miller, W. et al. (1990), 'Basic local alignment search tool', J. Mol. Biol., Vol. 215, pp. 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
-
58
-
-
13244255415
-
'MUSCLE: A multiple sequence alignment method with reduced time and space complexity'
-
Edgar, R. C. (2004), 'MUSCLE: A multiple sequence alignment method with reduced time and space complexity', BMC Bioinformatics, Vol. 5, p. 113.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
59
-
-
0026579475
-
'Analysis of nonuniformity in intron phase distribution'
-
Fedorov, A., Suboch, G., Bujakov, M. and Fedorova, L. (1992), 'Analysis of nonuniformity in intron phase distribution', Nucleic Acids Res., Vol. 20, pp. 2553-2557.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 2553-2557
-
-
Fedorov, A.1
Suboch, G.2
Bujakov, M.3
Fedorova, L.4
-
60
-
-
0032753460
-
'Association of intron phases with conservation at splice site sequences and evolution of spliceosomal introns'
-
Long, M. and Deutsch, M. (1999), 'Association of intron phases with conservation at splice site sequences and evolution of spliceosomal introns', Mol. Biol. Evol., Vol. 16, pp. 1528-1534.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1528-1534
-
-
Long, M.1
Deutsch, M.2
-
61
-
-
0033637638
-
'Testing the "proto-splice sites" model of intron origin: Evidence from analysis of intron phase correlations'
-
Long, M. and Rosenberg, C. (2000), 'Testing the "proto-splice sites" model of intron origin: Evidence from analysis of intron phase correlations', Mol. Biol. Evol., Vol. 17, pp. 1789-1796.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1789-1796
-
-
Long, M.1
Rosenberg, C.2
-
62
-
-
0345772209
-
'Evidence of splice signal migration from exon to intron during intron evolution'
-
Sverdlov, A. V., Rogozin, I. B., Babenko, V. N. and Koonin, E. V. (2003), 'Evidence of splice signal migration from exon to intron during intron evolution', Curr. Biol., Vol. 13, pp. 2170-2174.
-
(2003)
Curr. Biol.
, vol.13
, pp. 2170-2174
-
-
Sverdlov, A.V.1
Rogozin, I.B.2
Babenko, V.N.3
Koonin, E.V.4
-
63
-
-
14644402410
-
'Can codon usage bias explain intron phase distributions and exon symmetry?'
-
Ruvinsky, A., Eskesen, S. T., Eskesen, F. N. and Hurst, L. D. (2005), 'Can codon usage bias explain intron phase distributions and exon symmetry?', J. Mol. Evol., Vol. 60, pp. 99-104.
-
(2005)
J. Mol. Evol.
, vol.60
, pp. 99-104
-
-
Ruvinsky, A.1
Eskesen, S.T.2
Eskesen, F.N.3
Hurst, L.D.4
-
64
-
-
0032885169
-
'Genome evolution and the evolution of exon-shuffling - A review'
-
Patthy, L. (1999), 'Genome evolution and the evolution of exon-shuffling - a review', Gene, Vol. 238, pp. 103-114.
-
(1999)
Gene
, vol.238
, pp. 103-114
-
-
Patthy, L.1
-
65
-
-
0038306145
-
'Modular assembly of genes and the evolution of new functions'
-
Patthy, L. (2003), 'Modular assembly of genes and the evolution of new functions', Genetica, Vol. 118, pp. 217-231.
-
(2003)
Genetica
, vol.118
, pp. 217-231
-
-
Patthy, L.1
-
66
-
-
13744252347
-
'Significant expansion of exon-bordering protein domains during animal proteome evolution'
-
Liu, M., Walch, H., Wu, S. and Grigoriev, A. (2005), 'Significant expansion of exon-bordering protein domains during animal proteome evolution', Nucleic Acids Res., Vol. 33, pp. 95-105.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 95-105
-
-
Liu, M.1
Walch, H.2
Wu, S.3
Grigoriev, A.4
-
67
-
-
0026148460
-
'Exons - Original building blocks of proteins?'
-
Patthy, L. (1991), 'Exons - original building blocks of proteins?', Bioessays, Vol. 13, pp. 187-192.
-
(1991)
Bioessays
, vol.13
, pp. 187-192
-
-
Patthy, L.1
-
68
-
-
0023646322
-
'Intron-dependent evolution: Preferred types of exons and introns'
-
Patthy, L. (1987), 'Intron-dependent evolution: Preferred types of exons and introns', FEBS Lett., Vol. 214, pp. 1-7.
-
(1987)
FEBS Lett.
, vol.214
, pp. 1-7
-
-
Patthy, L.1
-
70
-
-
15444379114
-
'Resolution of a deep animal divergence by the pattern of intron conservation'
-
Roy, S. W. and Gilbert, W. (2005), 'Resolution of a deep animal divergence by the pattern of intron conservation', Proc. Natl Acad. Sci. USA, Vol. 102, pp. 4403-4408.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 4403-4408
-
-
Roy, S.W.1
Gilbert, W.2
-
71
-
-
0031010579
-
'Evidence for a clade of nematodes, arthropods and other moulting animals'
-
Aguinaldo, A. M., Turbeville, J. M., Linford, L. S. et al. (1997), 'Evidence for a clade of nematodes, arthropods and other moulting animals', Nature, Vol. 387, pp. 489-493.
-
(1997)
Nature
, vol.387
, pp. 489-493
-
-
Aguinaldo, A.M.1
Turbeville, J.M.2
Linford, L.S.3
-
72
-
-
0033918763
-
'The significance of moulting in Ecdysozoan evolution'
-
Valentine, J. W. and Collins, A. G. (2000), 'The significance of moulting in Ecdysozoan evolution', Evol. Dev., Vol. 2, pp. 152-156.
-
(2000)
Evol. Dev.
, vol.2
, pp. 152-156
-
-
Valentine, J.W.1
Collins, A.G.2
-
73
-
-
0034945410
-
'Animal phylogeny and the ancestry of bilaterians: Inferences from morphology and 18S rDNA gene sequences'
-
Peterson, K. J. and Eernisse, D. J. (2001), 'Animal phylogeny and the ancestry of bilaterians: Inferences from morphology and 18S rDNA gene sequences', Evol. Dev., Vol. 3, pp. 170-205.
-
(2001)
Evol. Dev.
, vol.3
, pp. 170-205
-
-
Peterson, K.J.1
Eernisse, D.J.2
-
74
-
-
0344952061
-
'The evolutionary position of nematodes'
-
Blair, J. E., Ikeo, K., Gojobori, T. and Hedges, S. B. (2002), 'The evolutionary position of nematodes', BMC Evol. Biol., Vol. 2, p. 7.
-
(2002)
BMC Evol. Biol.
, vol.2
, pp. 7
-
-
Blair, J.E.1
Ikeo, K.2
Gojobori, T.3
Hedges, S.B.4
-
75
-
-
0345874732
-
'Coelomata and not ecdysozoa: Evidence from genome-wide phylogenetic analysis'
-
Wolf, Y. I., Rogozin, I. B. and Koonin, E. V. (2004), 'Coelomata and not ecdysozoa: Evidence from genome-wide phylogenetic analysis', Genome Res., Vol. 14, pp. 29-36.
-
(2004)
Genome Res.
, vol.14
, pp. 29-36
-
-
Wolf, Y.I.1
Rogozin, I.B.2
Koonin, E.V.3
-
76
-
-
17744379783
-
'The Opisthokonta and the ecdysozoa may not be clades: Stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the coelomata than ecdysozoa'
-
Philip, G. K., Creevey, C. J. and McInerney, J. O. (2005), 'The Opisthokonta and the ecdysozoa may not be clades: Stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the coelomata than ecdysozoa', Mol. Biol. Evol., Vol. 22, pp. 1175-1184.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1175-1184
-
-
Philip, G.K.1
Creevey, C.J.2
McInerney, J.O.3
-
77
-
-
0034503382
-
'Opinion: Long branch attraction and protist phylogeny'
-
Philippe, H. (2000), 'Opinion: Long branch attraction and protist phylogeny', Protist, Vol. 151, pp. 307-316.
-
(2000)
Protist
, vol.151
, pp. 307-316
-
-
Philippe, H.1
-
78
-
-
0034280339
-
'Prediction and phylogenetic analysis of mammalian short interspersed elements (SINEs)'
-
Rogozin, I. B., Mayorov, V. I., Lavrentieva, M. V. et al. (2000), 'Prediction and phylogenetic analysis of mammalian short interspersed elements (SINEs)', Brief. Bioinform., Vol. 1, pp. 260-274.
-
(2000)
Brief. Bioinform.
, vol.1
, pp. 260-274
-
-
Rogozin, I.B.1
Mayorov, V.I.2
Lavrentieva, M.V.3
-
79
-
-
0033621045
-
'Late changes in spliceosomal introns define clades in vertebrate evolution'
-
Venkatesh, B., Ning, Y. and Brenner, S. (1999), 'Late changes in spliceosomal introns define clades in vertebrate evolution', Proc. Natl. Acad. Sci. USA, Vol. 96, pp. 10267-10271.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 10267-10271
-
-
Venkatesh, B.1
Ning, Y.2
Brenner, S.3
-
80
-
-
0345306751
-
'The origins of genome complexity'
-
Lynch, M. and Conery, J. S. (2003), 'The origins of genome complexity', Science, Vol. 302, pp. 1401-1404.
-
(2003)
Science
, vol.302
, pp. 1401-1404
-
-
Lynch, M.1
Conery, J.S.2
-
81
-
-
3242708809
-
'Of statistics and genomes'
-
Tautz, D. and Lassig, M. (2004), 'Of statistics and genomes', Trends Genet., Vol. 20, pp. 344-346.
-
(2004)
Trends Genet.
, vol.20
, pp. 344-346
-
-
Tautz, D.1
Lassig, M.2
-
82
-
-
0037630627
-
'Introns in gene evolution'
-
Fedorova, L. and Fedorov, A. (2003), 'Introns in gene evolution', Genetica, Vol. 118, pp. 123-131.
-
(2003)
Genetica
, vol.118
, pp. 123-131
-
-
Fedorova, L.1
Fedorov, A.2
-
83
-
-
0037041395
-
'An extensive network of coupling among gene expression machines'
-
Maniatis, T. and Reed, R. (2002), 'An extensive network of coupling among gene expression machines', Nature, Vol. 416, pp. 499-506.
-
(2002)
Nature
, vol.416
, pp. 499-506
-
-
Maniatis, T.1
Reed, R.2
|