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Volumn 14, Issue 6, 2004, Pages 505-509

Exon junction sequences as cryptic splice sites: Implications for intron origin

Author keywords

[No Author keywords available]

Indexed keywords

ACTIN; PRIMER DNA;

EID: 1842535132     PISSN: 09609822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cub.2004.02.063     Document Type: Article
Times cited : (44)

References (31)
  • 1
    • 0018263844 scopus 로고
    • Why genes in pieces?
    • Gilbert W. Why genes in pieces? Nature. 271:1978;501.
    • (1978) Nature , vol.271 , pp. 501
    • Gilbert, W.1
  • 2
    • 0001468848 scopus 로고    scopus 로고
    • Splicing of precursors to mRNAs by the spliceosomes
    • Second Edition Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
    • Burge C.B., Tuschl T., Sharp P.A. Splicing of precursors to mRNAs by the spliceosomes. Second Edition The RNA World. 1999;525-560 Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1999) The RNA World , pp. 525-560
    • Burge, C.B.1    Tuschl, T.2    Sharp, P.A.3
  • 3
    • 0037062982 scopus 로고    scopus 로고
    • Alternative pre-mRNA splicing and proteome expansion in metazoans
    • Maniatis T., Tasic B. Alternative pre-mRNA splicing and proteome expansion in metazoans. Nature. 418:2002;236-243.
    • (2002) Nature , vol.418 , pp. 236-243
    • Maniatis, T.1    Tasic, B.2
  • 4
    • 0027254031 scopus 로고
    • Why do genes have introns?
    • Dibb N.J. Why do genes have introns? FEBS Lett. 325:1993;135-139.
    • (1993) FEBS Lett. , vol.325 , pp. 135-139
    • Dibb, N.J.1
  • 5
    • 0024365086 scopus 로고
    • How were introns inserted into nuclear genes?
    • Rogers J.H. How were introns inserted into nuclear genes? Trends Genet. 5:1989;213-216.
    • (1989) Trends Genet. , vol.5 , pp. 213-216
    • Rogers, J.H.1
  • 6
    • 0025810123 scopus 로고
    • Intron phylogeny: A new hypothesis
    • Cavalier-Smith T. Intron phylogeny. a new hypothesis Trends Genet. 7:1991;145-148.
    • (1991) Trends Genet. , vol.7 , pp. 145-148
    • Cavalier-Smith, T.1
  • 7
    • 0030985059 scopus 로고    scopus 로고
    • Intron distribution in ancient paralogs supports random insertion and not random loss
    • Cho G., Doolittle R.F. Intron distribution in ancient paralogs supports random insertion and not random loss. J. Mol. Evol. 44:1997;573-584.
    • (1997) J. Mol. Evol. , vol.44 , pp. 573-584
    • Cho, G.1    Doolittle, R.F.2
  • 8
    • 0031737389 scopus 로고    scopus 로고
    • The recent origins of spliceosomal introns revisited
    • Logsdon J.M. The recent origins of spliceosomal introns revisited. Curr. Opin. Genet. Dev. 8:1998;637-648.
    • (1998) Curr. Opin. Genet. Dev. , vol.8 , pp. 637-648
    • Logsdon, J.M.1
  • 9
    • 34547642637 scopus 로고
    • Genes in pieces: Were they ever together?
    • Doolittle W.F. Genes in pieces. were they ever together? Nature. 272:1978;581-582.
    • (1978) Nature , vol.272 , pp. 581-582
    • Doolittle, W.F.1
  • 11
    • 0032574738 scopus 로고    scopus 로고
    • Towards a resolution of the introns early/late debate: Only phase zero introns are correlated with the structure of ancient proteins
    • De Souza S.J., Long M., Klein R.J., Roy S., Lin S., Gilbert W. Towards a resolution of the introns early/late debate. only phase zero introns are correlated with the structure of ancient proteins Proc. Natl. Acad. Sci. USA. 95:1999;5094-5095.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 5094-5095
    • De Souza, S.J.1    Long, M.2    Klein, R.J.3    Roy, S.4    Lin, S.5    Gilbert, W.6
  • 12
    • 0037629718 scopus 로고    scopus 로고
    • Recent evidence for the exon theory of genes
    • Roy S.W. Recent evidence for the exon theory of genes. Genetica. 118:2003;251-266.
    • (2003) Genetica , vol.118 , pp. 251-266
    • Roy, S.W.1
  • 13
    • 0024462103 scopus 로고
    • Evidence that introns were gained at proto-splice sites
    • Dibb N.J., Newman A.J. Evidence that introns were gained at proto-splice sites. EMBO J. 8:1989;2015-2021.
    • (1989) EMBO J. , vol.8 , pp. 2015-2021
    • Dibb, N.J.1    Newman, A.J.2
  • 14
    • 0027054380 scopus 로고
    • Features of spliceosome evolution and function inferred from an analysis of the information at human splice sites
    • Stephens R.M., Schneider T.D. Features of spliceosome evolution and function inferred from an analysis of the information at human splice sites. J. Mol. Biol. 228:1992;1124-1136.
    • (1992) J. Mol. Biol. , vol.228 , pp. 1124-1136
    • Stephens, R.M.1    Schneider, T.D.2
  • 15
    • 0025812574 scopus 로고
    • Proto-splice site model of intron origin
    • Dibb N.J. Proto-splice site model of intron origin. J. Theor. Biol. 151:1991;405-416.
    • (1991) J. Theor. Biol. , vol.151 , pp. 405-416
    • Dibb, N.J.1
  • 16
    • 0025835260 scopus 로고
    • Genomic structure of Chlamydomonas caltractin. Evidence for intron insertion suggests a probable genealogy for the EF-hand superfamily of proteins
    • Lee V.D., Stapleton M., Huang B. Genomic structure of Chlamydomonas caltractin. Evidence for intron insertion suggests a probable genealogy for the EF-hand superfamily of proteins. J. Mol. Biol. 5:1991;175-191.
    • (1991) J. Mol. Biol. , vol.5 , pp. 175-191
    • Lee, V.D.1    Stapleton, M.2    Huang, B.3
  • 17
    • 0031835125 scopus 로고    scopus 로고
    • Intron loss and gain during evolution of the catalase gene family in angiosperms
    • Frugoli J.A., McPeek M.A., Thomas T.L., McClung C.R. Intron loss and gain during evolution of the catalase gene family in angiosperms. Genetics. 149:1998;355-366.
    • (1998) Genetics , vol.149 , pp. 355-366
    • Frugoli, J.A.1    McPeek, M.A.2    Thomas, T.L.3    McClung, C.R.4
  • 18
    • 0032849998 scopus 로고    scopus 로고
    • Nucleus-encoded, plastid-targeted acetolactate synthase genes in two closely related chlorophytes, Chlamydomonas reinhardtii and Volvox carteri: Phylogenetic origins and recent insertion of introns
    • Funke R.P., Kovar J.L., Logsdon J.M. Jr., Corrette-Bennett J.C., Strauss D.R., Weeks D.P. Nucleus-encoded, plastid-targeted acetolactate synthase genes in two closely related chlorophytes, Chlamydomonas reinhardtii and Volvox carteri. phylogenetic origins and recent insertion of introns Mol. Gen. Genet. 262:1999;12-21.
    • (1999) Mol. Gen. Genet. , vol.262 , pp. 12-21
    • Funke, R.P.1    Kovar, J.L.2    Logsdon, J.M.Jr.3    Corrette-Bennett, J.C.4    Strauss, D.R.5    Weeks, D.P.6
  • 19
    • 0033978739 scopus 로고    scopus 로고
    • Characterization of a ubiquitous expressed gene family encoding polygalacturonase in Arabidopsis thaliana
    • Torki M., Mandaron P., Mache R., Falconet D. Characterization of a ubiquitous expressed gene family encoding polygalacturonase in Arabidopsis thaliana. Gene. 242:2000;427-436.
    • (2000) Gene , vol.242 , pp. 427-436
    • Torki, M.1    Mandaron, P.2    MacHe, R.3    Falconet, D.4
  • 21
    • 0037120655 scopus 로고    scopus 로고
    • An intron-less betagamma-crystallin-type gene from the sponge Geodia cydonium
    • Di Maro A., Pizzo E., Cubellis M.V., D'Alessio G. An intron-less betagamma-crystallin-type gene from the sponge Geodia cydonium. Gene. 299:2002;79-82.
    • (2002) Gene , vol.299 , pp. 79-82
    • Di Maro, A.1    Pizzo, E.2    Cubellis, M.V.3    D'Alessio, G.4
  • 22
    • 0022550119 scopus 로고
    • A compensatory base change in U1 snRNA suppresses a 5′ splice site mutation
    • Zhuang Y., Weiner A.M. A compensatory base change in U1 snRNA suppresses a 5′ splice site mutation. Cell. 46:1986;827-835.
    • (1986) Cell , vol.46 , pp. 827-835
    • Zhuang, Y.1    Weiner, A.M.2
  • 23
    • 0030988847 scopus 로고    scopus 로고
    • The actin gene of the glaucocystophyte Cyanophora paradoxa: Analysis of the coding region and introns, and an actin phylogeny of eukaryotes
    • Bhattacharya D., Weber K. The actin gene of the glaucocystophyte Cyanophora paradoxa. analysis of the coding region and introns, and an actin phylogeny of eukaryotes Curr. Genet. 31:1997;439-446.
    • (1997) Curr. Genet. , vol.31 , pp. 439-446
    • Bhattacharya, D.1    Weber, K.2
  • 24
    • 1842418358 scopus 로고    scopus 로고
    • Protein Profile Actin, Fourth Edition
    • Oxford: Oxford University Press
    • Sheterline P., Clayton J., Sparrow J.C. Protein Profile Actin, Fourth Edition. P. Sheterline. 1998;Oxford University Press, Oxford.
    • (1998) P. Sheterline
    • Sheterline, P.1    Clayton, J.2    Sparrow, J.C.3
  • 25
    • 0028288181 scopus 로고
    • Intron positions in actin genes seem unrelated to the secondary structure of the protein
    • Weber K., Kabsch W. Intron positions in actin genes seem unrelated to the secondary structure of the protein. EMBO J. 13:1994;1280-1286.
    • (1994) EMBO J. , vol.13 , pp. 1280-1286
    • Weber, K.1    Kabsch, W.2
  • 26
    • 0022131865 scopus 로고
    • On the origin of RNA splicing and introns
    • Sharp P.A. On the origin of RNA splicing and introns. Cell. 42:1995;397-400.
    • (1995) Cell , vol.42 , pp. 397-400
    • Sharp, P.A.1
  • 27
    • 0042921194 scopus 로고    scopus 로고
    • Remarkable and interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution
    • Rogozin I.B., Wolf Y.I., Sorokin A.V., Mirkin B.G., Koonin E.V. Remarkable and interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution. Curr. Biol. 13:2003;1512-1517.
    • (2003) Curr. Biol. , vol.13 , pp. 1512-1517
    • Rogozin, I.B.1    Wolf, Y.I.2    Sorokin, A.V.3    Mirkin, B.G.4    Koonin, E.V.5
  • 28
    • 0031915298 scopus 로고    scopus 로고
    • Relationship between "proto-splice sites" and intron phases: Evidence from dicodon analysis
    • Long M., De Souza S.J., Rosenberg C., Gilbert W. Relationship between "proto-splice sites" and intron phases. evidence from dicodon analysis Proc. Natl. Acad. Sci. USA. 95:1998;219-223.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 219-223
    • Long, M.1    De Souza, S.J.2    Rosenberg, C.3    Gilbert, W.4
  • 29
    • 0033199453 scopus 로고    scopus 로고
    • Cryptic intron activation within the large exon of the mouse polymeric immunglobulin receptor gene: Cryptic splice sites correspond to protein domain boundaries
    • Bruce S.R., Kaetzel C.S., Peterson M.L. Cryptic intron activation within the large exon of the mouse polymeric immunglobulin receptor gene. cryptic splice sites correspond to protein domain boundaries Nucleic Acids Res. 27:1999;3446-3454.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 3446-3454
    • Bruce, S.R.1    Kaetzel, C.S.2    Peterson, M.L.3
  • 30
    • 0020674023 scopus 로고
    • Unusual splice sites revealed by mutagenic inactivation of an authentic splice site of the rabbit β-globin gene
    • Wieringa B., Meyer F., Reiser J., Weissmann C. Unusual splice sites revealed by mutagenic inactivation of an authentic splice site of the rabbit β-globin gene. Nature. 301:1983;38-43.
    • (1983) Nature , vol.301 , pp. 38-43
    • Wieringa, B.1    Meyer, F.2    Reiser, J.3    Weissmann, C.4
  • 31
    • 0031593151 scopus 로고    scopus 로고
    • A variable intron distribution in globin genes of Chironomus: Evidence for recent intron gain
    • Hankeln T., Friedl H., Ebersberger I., Martin J., Schmidt E.R. A variable intron distribution in globin genes of Chironomus. evidence for recent intron gain Gene. 205:1997;151-160.
    • (1997) Gene , vol.205 , pp. 151-160
    • Hankeln, T.1    Friedl, H.2    Ebersberger, I.3    Martin, J.4    Schmidt, E.R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.