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Volumn 45, Issue 5, 2005, Pages 1313-1323

Virtual screening and scaffold hopping based on GRID molecular interaction fields

Author keywords

[No Author keywords available]

Indexed keywords

BLOOD; COMBINATORIAL MATHEMATICS; COMPLEXATION; CONFORMATIONS; DATABASE SYSTEMS; MOLECULAR DYNAMICS;

EID: 26944441280     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci049626p     Document Type: Article
Times cited : (49)

References (63)
  • 1
    • 5344244908 scopus 로고    scopus 로고
    • Chemical similarity searching
    • Willett, P. Chemical Similarity Searching. J. Chem. Inf. Comput. Sci. 1998, 38, 983-996.
    • (1998) J. Chem. Inf. Comput. Sci. , vol.38 , pp. 983-996
    • Willett, P.1
  • 3
    • 0033523672 scopus 로고    scopus 로고
    • "Scaffold-Hopping" by topological pharmacophore search: A contribution to virtual screening
    • Schneider, G.; Neidhart, W.; Giller, T.; Schmid, G. "Scaffold- Hopping" by Topological Pharmacophore Search: A Contribution to Virtual Screening. Angew. Chem., Int. Ed. 1999, 38, 2894-2896.
    • (1999) Angew. Chem., Int. Ed. , vol.38 , pp. 2894-2896
    • Schneider, G.1    Neidhart, W.2    Giller, T.3    Schmid, G.4
  • 4
    • 0032572816 scopus 로고    scopus 로고
    • A scoring scheme for discriminating between drugs and nondrugs
    • Sadowski, J.; Kubinyi, H. A scoring scheme for discriminating between drugs and nondrugs. J. Med. Chem. 1998, 41, 3325-3329.
    • (1998) J. Med. Chem. , vol.41 , pp. 3325-3329
    • Sadowski, J.1    Kubinyi, H.2
  • 6
    • 13944255377 scopus 로고    scopus 로고
    • Structure-based drug discovery using GPCR homology modeling: Successful virtual screening for antagonists of the alpha1A adrenergic receptor
    • Evers, A.; Klabunde, T. Structure-based drug discovery using GPCR homology modeling: successful virtual screening for antagonists of the alpha1A adrenergic receptor. J. Med. Chem. 2005, 48, 1088-1097.
    • (2005) J. Med. Chem. , vol.48 , pp. 1088-1097
    • Evers, A.1    Klabunde, T.2
  • 7
    • 13944253576 scopus 로고    scopus 로고
    • Optimization and validation of a docking-scoring protocol; application to virtual screening for COX-2 inhibitors
    • Mozziconacci, J. C.; Arnoult, E.; Bernard, P.; Do, Q. T.; Marot, C. Optimization and validation of a docking-scoring protocol; application to virtual screening for COX-2 inhibitors. J. Med. Chem. 2005, 48, 1055-1068.
    • (2005) J. Med. Chem. , vol.48 , pp. 1055-1068
    • Mozziconacci, J.C.1    Arnoult, E.2    Bernard, P.3    Do, Q.T.4    Marot, C.5
  • 9
    • 13844319727 scopus 로고    scopus 로고
    • Pharmacophore identification, in silico screening, and virtual library design for inhibitors of the human factor Xa
    • Krovat, E. M.; Fruhwirth, K. H.; Langer, T. Pharmacophore identification, in silico screening, and virtual library design for inhibitors of the human factor Xa. J. Chem. Inf. Model. 2005, 45, 146-159.
    • (2005) J. Chem. Inf. Model. , vol.45 , pp. 146-159
    • Krovat, E.M.1    Fruhwirth, K.H.2    Langer, T.3
  • 10
    • 0026642983 scopus 로고
    • 3D database searching in drug design
    • Martin, Y. C. 3D database searching in drug design. J. Med. Chem. 1992, 35, 2145-2154.
    • (1992) J. Med. Chem. , vol.35 , pp. 2145-2154
    • Martin, Y.C.1
  • 11
    • 10844249112 scopus 로고    scopus 로고
    • Molecular surface point environments for virtual screening and the elucidation of binding patterns (MOLPRINT 3D)
    • Bender, A.; Mussa, H. Y.; Gill, G. S.; Glen, R. C. Molecular surface point environments for virtual screening and the elucidation of binding patterns (MOLPRINT 3D). J. Med. Chem. 2004, 47, 6569-6583.
    • (2004) J. Med. Chem. , vol.47 , pp. 6569-6583
    • Bender, A.1    Mussa, H.Y.2    Gill, G.S.3    Glen, R.C.4
  • 12
    • 0035924235 scopus 로고    scopus 로고
    • Structure-based generation of a new class of potent Cdk4 inhibitors: New de novo design strategy and library design
    • Honma, T.; Hayashi, K.; Aoyama, T.; Hashimoto, N.; Machida, T. Structure-based generation of a new class of potent Cdk4 inhibitors: new de novo design strategy and library design. J. Med. Chem. 2001, 44, 4615-4627.
    • (2001) J. Med. Chem. , vol.44 , pp. 4615-4627
    • Honma, T.1    Hayashi, K.2    Aoyama, T.3    Hashimoto, N.4    Machida, T.5
  • 13
    • 0037013685 scopus 로고    scopus 로고
    • Scaffold hopping and optimization towards libraries of glycogen synthase kinase-3 inhibitors
    • Naerum, L.; Norskov-Lauritsen, L.; Olesen, P. H. Scaffold hopping and optimization towards libraries of glycogen synthase kinase-3 inhibitors. Bioorg. Med. Chem. Lett. 2002, 12, 1525-1528.
    • (2002) Bioorg. Med. Chem. Lett. , vol.12 , pp. 1525-1528
    • Naerum, L.1    Norskov-Lauritsen, L.2    Olesen, P.H.3
  • 14
    • 0037431396 scopus 로고    scopus 로고
    • De novo design, synthesis, and evaluation of novel nonsteroidal phenanthrene ligands for the estrogen receptor
    • Schmidt, J. M.; Mercure, J.; Tremblay, G. B.; Page, M.; Kalbakji, A. De novo design, synthesis, and evaluation of novel nonsteroidal phenanthrene ligands for the estrogen receptor. J. Med. Chem. 2003, 46, 1408-1418.
    • (2003) J. Med. Chem. , vol.46 , pp. 1408-1418
    • Schmidt, J.M.1    Mercure, J.2    Tremblay, G.B.3    Page, M.4    Kalbakji, A.5
  • 15
    • 1642458726 scopus 로고    scopus 로고
    • Scaffold hopping in de novo design. Ligand generation in the absence of receptor information
    • Lloyd, D. G.; Buenemann, C. L.; Todorov, N. P.; Manallack, D. T.; Dean, P. M. Scaffold hopping in de novo design. Ligand generation in the absence of receptor information. J. Med. Chem. 2004, 47, 493-496.
    • (2004) J. Med. Chem. , vol.47 , pp. 493-496
    • Lloyd, D.G.1    Buenemann, C.L.2    Todorov, N.P.3    Manallack, D.T.4    Dean, P.M.5
  • 16
    • 0037479976 scopus 로고    scopus 로고
    • Drug rings database with web interface. A tool for identifying alternative chemical rings in lead discovery programs
    • Lewell, X. Q.; Jones, A. C.; Bruce, C. L.; Harper, G.; Jones, M. M. Drug rings database with web interface. A tool for identifying alternative chemical rings in lead discovery programs. J. Med. Chem. 2003, 46, 3257-3274.
    • (2003) J. Med. Chem. , vol.46 , pp. 3257-3274
    • Lewell, X.Q.1    Jones, A.C.2    Bruce, C.L.3    Harper, G.4    Jones, M.M.5
  • 17
    • 9744222830 scopus 로고    scopus 로고
    • A 3D similarity method for scaffold hopping from known drugs or natural ligands to new chemotypes
    • Jenkins, J. L.; Glick, M.; Davies, J. W. A 3D Similarity Method for Scaffold Hopping from Known Drugs or Natural Ligands to New Chemotypes. J. Med. Chem. 2004, 47, 6144-6159.
    • (2004) J. Med. Chem. , vol.47 , pp. 6144-6159
    • Jenkins, J.L.1    Glick, M.2    Davies, J.W.3
  • 18
    • 11144222535 scopus 로고    scopus 로고
    • Lead hopping
    • Validation of topomer similarity as a superior predictor of similar biological activities
    • Cramer, R. D.; Jilek, R. J.; Guessregen, S.; Clark, S. J.; Wendt, B. "Lead hopping". Validation of topomer similarity as a superior predictor of similar biological activities. J. Med. Chem. 2004, 47, 6777-6791.
    • (2004) J. Med. Chem. , vol.47 , pp. 6777-6791
    • Cramer, R.D.1    Jilek, R.J.2    Guessregen, S.3    Clark, S.J.4    Wendt, B.5
  • 19
    • 14944348527 scopus 로고    scopus 로고
    • A shape-based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction
    • Rush, I. T.; Grant, J. A.; Mosyak, L.; Nicholls, A. A shape-based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction. J. Med. Chem. 2005, 48, 1489-1495.
    • (2005) J. Med. Chem. , vol.48 , pp. 1489-1495
    • Rush, I.T.1    Grant, J.A.2    Mosyak, L.3    Nicholls, A.4
  • 20
    • 0037920567 scopus 로고    scopus 로고
    • Three-dimensional quantitative structure-activity relationship analyses using comparative molecular field analysis and comparative molecular similarity indices analysis to elucidate selectivity differences of inhibitors binding to trypsin, thrombin, and factor Xa
    • Bohm, M.; St. Rzebecher, J.; Klebe, G. Three-dimensional quantitative structure-activity relationship analyses using comparative molecular field analysis and comparative molecular similarity indices analysis to elucidate selectivity differences of inhibitors binding to trypsin, thrombin, and factor Xa. J. Med. Chem. 1999, 42, 458-477.
    • (1999) J. Med. Chem. , vol.42 , pp. 458-477
    • Bohm, M.1    St. Rzebecher, J.2    Klebe, G.3
  • 21
    • 0032482311 scopus 로고    scopus 로고
    • Structural analysis of thrombin complexed with potent inhibitors incorporating a phenyl group as a peptide mimetic and aminopyridines as guanidine substitutes
    • Bone, R.; Lu, T.; Illig, C. R.; Soll, R. M.; Spurlino, J. C. Structural analysis of thrombin complexed with potent inhibitors incorporating a phenyl group as a peptide mimetic and aminopyridines as guanidine substitutes. J. Med. Chem. 1998, 41, 2068-2075.
    • (1998) J. Med. Chem. , vol.41 , pp. 2068-2075
    • Bone, R.1    Lu, T.2    Illig, C.R.3    Soll, R.M.4    Spurlino, J.C.5
  • 22
    • 0037434510 scopus 로고    scopus 로고
    • Metabolism-directed optimization of 3-aminopyrazinone acetamide thrombin inhibitors. Development of an orally bioavailable series containing PI and P3 pyridines
    • Burgey, C. S.; Robinson, K. A.; Lyle, T. A.; Sanderson, P. E.; Lewis, S. D. Metabolism-directed optimization of 3-aminopyrazinone acetamide thrombin inhibitors. Development of an orally bioavailable series containing PI and P3 pyridines. J. Med. Chem. 2003, 46, 461-473.
    • (2003) J. Med. Chem. , vol.46 , pp. 461-473
    • Burgey, C.S.1    Robinson, K.A.2    Lyle, T.A.3    Sanderson, P.E.4    Lewis, S.D.5
  • 23
    • 0037073204 scopus 로고    scopus 로고
    • Dysinosin A: A novel inhibitor of Factor VIIa and thrombin from a new genus and species of Australian sponge of the family Dysideidae
    • Carroll, A. R.; Pierens, G. K.; Fechner, G.; De Almeida Leone, P.; Ngo, A. Dysinosin A: a novel inhibitor of Factor VIIa and thrombin from a new genus and species of Australian sponge of the family Dysideidae. J. Am. Chem. Soc. 2002, 124, 13340-13341.
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 13340-13341
    • Carroll, A.R.1    Pierens, G.K.2    Fechner, G.3    De Almeida Leone, P.4    Ngo, A.5
  • 24
    • 0037171819 scopus 로고    scopus 로고
    • Structure-based design of novel potent nonpeptide thrombin inhibitors
    • Hauel, N. H.; Nar, H.; Priepke, H.; Ries, U.; Stassen, J. M. Structure-based design of novel potent nonpeptide thrombin inhibitors. J. Med. Chem. 2002, 45, 1757-1766.
    • (2002) J. Med. Chem. , vol.45 , pp. 1757-1766
    • Hauel, N.H.1    Nar, H.2    Priepke, H.3    Ries, U.4    Stassen, J.M.5
  • 25
    • 0033594929 scopus 로고    scopus 로고
    • Crystal structures of thrombin complexed to a novel series of synthetic inhibitors containing a 5,5-trans-lactone template
    • Jhoti, H.; Cleasby, A.; Reid, S.; Thomas, P. J.; Weir, M. Crystal structures of thrombin complexed to a novel series of synthetic inhibitors containing a 5,5-trans-lactone template. Biochemistry 1999, 38, 7969-7977.
    • (1999) Biochemistry , vol.38 , pp. 7969-7977
    • Jhoti, H.1    Cleasby, A.2    Reid, S.3    Thomas, P.J.4    Weir, M.5
  • 26
    • 0035846071 scopus 로고    scopus 로고
    • Statistical molecular design, parallel synthesis, and biological evaluation of a library of thrombin inhibitors
    • Linusson, A.; Gottfries, J.; Olsson, T.; Ornskov, E.; Folestad, S. Statistical molecular design, parallel synthesis, and biological evaluation of a library of thrombin inhibitors. J. Med. Chem. 2001, 44, 3424-3439.
    • (2001) J. Med. Chem. , vol.44 , pp. 3424-3439
    • Linusson, A.1    Gottfries, J.2    Olsson, T.3    Ornskov, E.4    Folestad, S.5
  • 27
    • 0034628521 scopus 로고    scopus 로고
    • Structural basis of the thrombin selectivity of a ligand that contains the constrained arginine mimic (2S)-2-amino-(3S)-3-(1-carbamimidoyl- Piperidin-3-yl)-propanoic acid at P1
    • Narasimhan, L. S.; Rubin, J. R.; Holland, D. R.; Plummer, J. S.; Rapundalo, S. T. Structural basis of the thrombin selectivity of a ligand that contains the constrained arginine mimic (2S)-2-amino-(3S)-3-(1-carbamimidoyl- piperidin-3-yl)-propanoic acid at P1. J. Med. Chem. 2000, 43, 361-368.
    • (2000) J. Med. Chem. , vol.43 , pp. 361-368
    • Narasimhan, L.S.1    Rubin, J.R.2    Holland, D.R.3    Plummer, J.S.4    Rapundalo, S.T.5
  • 28
    • 0041424038 scopus 로고    scopus 로고
    • New proline mimetics: Synthesis of thrombin inhibitors incorporating cyclopentane- And cyclopentenedicarboxylic acid templates in the P2 position. Binding conformation investigated by X-ray crystallography
    • Noteberg, D.; Branalt, J.; Kvarnstrom, I.; Linschoten, M.; Musil, D. New proline mimetics: synthesis of thrombin inhibitors incorporating cyclopentane- and cyclopentenedicarboxylic acid templates in the P2 position. Binding conformation investigated by X-ray crystallography. J. Med. Chem. 2000, 43, 1705-1713.
    • (2000) J. Med. Chem. , vol.43 , pp. 1705-1713
    • Noteberg, D.1    Branalt, J.2    Kvarnstrom, I.3    Linschoten, M.4    Musil, D.5
  • 29
    • 0035966872 scopus 로고    scopus 로고
    • Estimation of binding affinities for selective thrombin inhibitors via Monte Carlo simulations
    • Pierce, A. C.; Jorgensen, W. L. Estimation of binding affinities for selective thrombin inhibitors via Monte Carlo simulations. J. Med. Chem. 2001, 44, 1043-1050.
    • (2001) J. Med. Chem. , vol.44 , pp. 1043-1050
    • Pierce, A.C.1    Jorgensen, W.L.2
  • 30
    • 0033594326 scopus 로고    scopus 로고
    • Bound structures of novel P3-P1′ beta-strand mimetic inhibitors of thrombin
    • St. Charles, R.; Matthews, J. H.; Zhang, E.; Tulinsky, A. Bound structures of novel P3-P1′ beta-strand mimetic inhibitors of thrombin. J. Med. Chem. 1999, 42, 1376-1383.
    • (1999) J. Med. Chem. , vol.42 , pp. 1376-1383
    • St. Charles, R.1    Matthews, J.H.2    Zhang, E.3    Tulinsky, A.4
  • 31
    • 0034108113 scopus 로고    scopus 로고
    • Protease inhibitors: Synthesis and QSAR study of novel classes of nonbasic thrombin inhibitors incorporating sulfonylguanidine and O-methyl-sulfonylisourea moieties at P1
    • Supuran, C. T.; Scozzafava, A.; Briganti, F.; Clare, B. W. Protease inhibitors: synthesis and QSAR study of novel classes of nonbasic thrombin inhibitors incorporating sulfonylguanidine and O-methyl-sulfonylisourea moieties at P1. J. Med. Chem. 2000, 43, 1793-1806.
    • (2000) J. Med. Chem. , vol.43 , pp. 1793-1806
    • Supuran, C.T.1    Scozzafava, A.2    Briganti, F.3    Clare, B.W.4
  • 32
    • 0035966876 scopus 로고    scopus 로고
    • Discovery and optimization of a novel series of thrombin receptor (par-1) antagonists: Potent, selective peptide mimetics based on indole and indazole templates
    • Zhang, H. C.; Derian, C. K.; Andrade-Gordon, P.; Hoekstra, W. J.; McComsey, D. F. Discovery and optimization of a novel series of thrombin receptor (par-1) antagonists: potent, selective peptide mimetics based on indole and indazole templates. J. Med. Chem. 2001, 44, 1021-1024.
    • (2001) J. Med. Chem. , vol.44 , pp. 1021-1024
    • Zhang, H.C.1    Derian, C.K.2    Andrade-Gordon, P.3    Hoekstra, W.J.4    McComsey, D.F.5
  • 33
    • 0036270049 scopus 로고    scopus 로고
    • Thrombin generation and its inhibition: A review of the scientific basis and mechanism of action of anticoagulant therapies
    • Walker, C. P.; Royston, D. Thrombin generation and its inhibition: a review of the scientific basis and mechanism of action of anticoagulant therapies. Br. J. Anaesth. 2002, 88, 848-863.
    • (2002) Br. J. Anaesth. , vol.88 , pp. 848-863
    • Walker, C.P.1    Royston, D.2
  • 34
  • 35
    • 0024431034 scopus 로고
    • The refined 1.9 A crystal structure of human alpha-thrombin: Interaction with D-Phe-Pro-Arg chloromethylketone and significance of the Tyr-Pro-Pro-Trp insertion segment
    • Bode, W.; Mayr, I.; Baumann, U.; Huber, R.; Stone, S. R. The refined 1.9 A crystal structure of human alpha-thrombin: interaction with D-Phe-Pro-Arg chloromethylketone and significance of the Tyr-Pro-Pro-Trp insertion segment. EMBO J. 1989, 8, 3467-3475.
    • (1989) EMBO J. , vol.8 , pp. 3467-3475
    • Bode, W.1    Mayr, I.2    Baumann, U.3    Huber, R.4    Stone, S.R.5
  • 36
    • 0033985723 scopus 로고    scopus 로고
    • The crystal structures of human alpha-thrombin complexed with active site- Directed diamino benzo[b]thiophene derivatives: A binding mode for a structurally novel class of inhibitors
    • Chirgadze, N. Y.; Sall, D. J.; Briggs, S. L.; Clawson, D. K.; Zhang, M. The crystal structures of human alpha-thrombin complexed with active site- directed diamino benzo[b]thiophene derivatives: A binding mode for a structurally novel class of inhibitors. Protein Sci. 2000, 9, 29-36.
    • (2000) Protein Sci. , vol.9 , pp. 29-36
    • Chirgadze, N.Y.1    Sall, D.J.2    Briggs, S.L.3    Clawson, D.K.4    Zhang, M.5
  • 37
    • 0029819059 scopus 로고    scopus 로고
    • Bovine thrombin complexed with an uncleavable analog of residues 7-19 of fibrinogen A alpha: Geometry of the catalytic triad and interactions of the P1′, P2′, and P3′ substrate residues
    • Martin, P. D.; Malkowski, M. G.; DiMaio, J.; Konishi, Y.; Ni, F. Bovine thrombin complexed with an uncleavable analog of residues 7-19 of fibrinogen A alpha: geometry of the catalytic triad and interactions of the P1′, P2′, and P3′ substrate residues. Biochemistry 1996, 35, 13030-13039.
    • (1996) Biochemistry , vol.35 , pp. 13030-13039
    • Martin, P.D.1    Malkowski, M.G.2    Dimaio, J.3    Konishi, Y.4    Ni, F.5
  • 38
    • 0030599010 scopus 로고    scopus 로고
    • A fast flexible docking method using an incremental construction algorithm
    • Rarey, M.; Kramer, B.; Lengauer, T.; Klebe, G. A fast flexible docking method using an incremental construction algorithm. J. Mol. Biol. 1996, 267, 470-489.
    • (1996) J. Mol. Biol. , vol.267 , pp. 470-489
    • Rarey, M.1    Kramer, B.2    Lengauer, T.3    Klebe, G.4
  • 39
    • 0031552362 scopus 로고    scopus 로고
    • Development and validation of a genetic algorithm for flexible docking
    • Jones, G.; Willett, P.; Glen, R. C.; Leach, A. R.; Taylor, R. Development and validation of a genetic algorithm for flexible docking. J. Mol. Biol. 1997, 267, 727-748.
    • (1997) J. Mol. Biol. , vol.267 , pp. 727-748
    • Jones, G.1    Willett, P.2    Glen, R.C.3    Leach, A.R.4    Taylor, R.5
  • 40
    • 0023965741 scopus 로고
    • A chemical Language and Information System. 1. Introduction to Methodology and Encoding Rules
    • Weininger, D. SMILES, a chemical Language and Information System. 1. Introduction to Methodology and Encoding Rules. J. Chem. Inf. Comput. Sci. 1988, 28, 31-36.
    • (1988) J. Chem. Inf. Comput. Sci. , vol.28 , pp. 31-36
    • Smiles, W.D.1
  • 42
    • 85071410518 scopus 로고    scopus 로고
    • Tripos Associates Inc.: St. Louis, MO
    • Confort; Tripos Associates Inc.: St. Louis, MO. http://www.tripos.com.
    • Confort
  • 43
    • 0021871375 scopus 로고
    • A computational procedure for determining energetically favorable binding sites on biologically important macromolecules
    • Goodford, P. J. A computational procedure for determining energetically favorable binding sites on biologically important macromolecules. J. Med. Chem. 1985, 28, 849-857.
    • (1985) J. Med. Chem. , vol.28 , pp. 849-857
    • Goodford, P.J.1
  • 44
    • 0024566942 scopus 로고
    • New hydrogen-bond potentials for use in determining energetically favorable binding sites on molecules of known structure
    • Boobbyer, D. N.; Goodford, P. J.; McWhinnie, P. M.; Wade, R. C. New hydrogen-bond potentials for use in determining energetically favorable binding sites on molecules of known structure. J. Med. Chem. 1989, 32, 1083-1094.
    • (1989) J. Med. Chem. , vol.32 , pp. 1083-1094
    • Boobbyer, D.N.1    Goodford, P.J.2    McWhinnie, P.M.3    Wade, R.C.4
  • 46
    • 0029965611 scopus 로고    scopus 로고
    • Crystal structures of thrombin with thiazole-containing inhibitors: Probes of the SI′ binding site
    • Matthews, J. H.; Krishnan, R.; Costanzo, M. J.; Maryanoff, B. E.; Tulinsky, A. Crystal structures of thrombin with thiazole-containing inhibitors: probes of the SI′ binding site. Biophys. J. 1996, 71, 2830-2839.
    • (1996) Biophys. J. , vol.71 , pp. 2830-2839
    • Matthews, J.H.1    Krishnan, R.2    Costanzo, M.J.3    Maryanoff, B.E.4    Tulinsky, A.5
  • 47
    • 0031580204 scopus 로고    scopus 로고
    • Human alpha-thrombin inhibition by the highly selective compounds N-ethoxycarbonyl-D-Phe-Pro-alpha-azaLys p-nitrophenyl ester and N-carbobenzoxy-Pro-alpha-azaLys p-nitrophenyl ester: A kinetic, thermodynamic and X-ray crystallographic study
    • De Simone, G.; Balliano, G.; Milla, P.; Gallina, C.; Giordano, C. Human alpha-thrombin inhibition by the highly selective compounds N-ethoxycarbonyl-D- Phe-Pro-alpha-azaLys p-nitrophenyl ester and N-carbobenzoxy-Pro-alpha-azaLys p-nitrophenyl ester: A kinetic, thermodynamic and X-ray crystallographic study. J. Mol. Biol. 1997, 269, 558-569.
    • (1997) J. Mol. Biol. , vol.269 , pp. 558-569
    • De Simone, G.1    Balliano, G.2    Milla, P.3    Gallina, C.4    Giordano, C.5
  • 48
    • 0030040580 scopus 로고    scopus 로고
    • Crystallographic determination of the structures of human alpha-thrombin complexed with BMS-186282 and BMS-189090
    • Malley, M. F.; Tabernero, L.; Chang, C. Y.; Ohringer, S. L.; Roberts, D. G. M. Crystallographic determination of the structures of human alpha-thrombin complexed with BMS-186282 and BMS-189090. Protein Sci. 1996, 5, 221-228.
    • (1996) Protein Sci. , vol.5 , pp. 221-228
    • Malley, M.F.1    Tabernero, L.2    Chang, C.Y.3    Ohringer, S.L.4    Roberts, D.G.M.5
  • 49
    • 0034176413 scopus 로고    scopus 로고
    • Structural basis for selectivity of a small molecule, S1-binding, submicromolar inhibitor of urokinase-type plasminogen activator
    • Katz, B. A.; Mackman, R.; Luong, C.; Radika, K.; Martelli, A. Structural basis for selectivity of a small molecule, S1-binding, submicromolar inhibitor of urokinase-type plasminogen activator. Chem. Biol. 2000, 7, 299-312.
    • (2000) Chem. Biol. , vol.7 , pp. 299-312
    • Katz, B.A.1    Mackman, R.2    Luong, C.3    Radika, K.4    Martelli, A.5
  • 51
    • 0035853282 scopus 로고    scopus 로고
    • A novel serine protease inhibition motif involving a multi-centered short hydrogen bonding network at the active site
    • Katz, B. A.; Elrod, K.; Luong, C.; Rice, M. J.; Mackman, R. L. A novel serine protease inhibition motif involving a multi-centered short hydrogen bonding network at the active site. J. Mol. Biol. 2001, 307, 1451-1486.
    • (2001) J. Mol. Biol. , vol.307 , pp. 1451-1486
    • Katz, B.A.1    Elrod, K.2    Luong, C.3    Rice, M.J.4    Mackman, R.L.5
  • 52
    • 0028930160 scopus 로고
    • Kinetic and crystallographic studies of thrombin with AC-(D)-Phe-Pro- BoroArg-OH and its lysine, amidine, homolysine, and ornithine analogs
    • Weber, P. C.; Lee, S. L.; Lewandowski, F. A.; Schadt, M. C.; Chang, C. H. Kinetic and crystallographic studies of thrombin with AC-(D)-Phe-Pro- boroArg-OH and its lysine, amidine, homolysine, and ornithine analogs. Biochemistry 1995, 34, 3750-3757.
    • (1995) Biochemistry , vol.34 , pp. 3750-3757
    • Weber, P.C.1    Lee, S.L.2    Lewandowski, F.A.3    Schadt, M.C.4    Chang, C.H.5
  • 53
    • 0033118633 scopus 로고    scopus 로고
    • Structures of thrombin retro-inhibited with SEL2711 and SEL2770 as they relate to factor Xa binding
    • Mochalkin, I.; Tulinsky, A. Structures of thrombin retro-inhibited with SEL2711 and SEL2770 as they relate to factor Xa binding. Acta Crystallogr., Sect. D 1999, 55, 785-793.
    • (1999) Acta Crystallogr., Sect. D , vol.55 , pp. 785-793
    • Mochalkin, I.1    Tulinsky, A.2
  • 54
    • 0034710718 scopus 로고    scopus 로고
    • GRid-INdependent Descriptors (GRIND): A novel class of alignment-independent three-dimensional molecular descriptors
    • Pastor, M.; Cruciani, G.; McLay, I.; Pickett, S.; Clementi, S. GRid-INdependent Descriptors (GRIND): a novel class of alignment-independent three-dimensional molecular descriptors. J. Med. Chem. 2000, 43, 3233-3243.
    • (2000) J. Med. Chem. , vol.43 , pp. 3233-3243
    • Pastor, M.1    Cruciani, G.2    McLay, I.3    Pickett, S.4    Clementi, S.5
  • 55
    • 0038440502 scopus 로고    scopus 로고
    • Predicting drug metabolism: A site of metabolism prediction tool applied to the cytochrome P450 2C9
    • Zamora, I.; Afzelius, L.; Cruciani, G. Predicting drug metabolism: a site of metabolism prediction tool applied to the cytochrome P450 2C9. J. Med. Chem. 2003, 46, 2313-2324.
    • (2003) J. Med. Chem. , vol.46 , pp. 2313-2324
    • Zamora, I.1    Afzelius, L.2    Cruciani, G.3
  • 56
    • 84987067987 scopus 로고
    • How Similar is a Molecule to Another? An electron density measure of the similarity between two compounds
    • Carbo, R.; Leyda, L.; Arnau, M. How Similar is a Molecule to Another? An electron density measure of the similarity between two compounds. Int. J. Quantum Chem. 1980, 17, 1185-1189.
    • (1980) Int. J. Quantum Chem. , vol.17 , pp. 1185-1189
    • Carbo, R.1    Leyda, L.2    Arnau, M.3
  • 57
    • 0024154259 scopus 로고
    • Multivariate data analysis and experimental design in biomedical research
    • Stahle, L.; Wold, S. Multivariate data analysis and experimental design in biomedical research. Prog. Med. Chem. 1988, 25, 291-338.
    • (1988) Prog. Med. Chem. , vol.25 , pp. 291-338
    • Stahle, L.1    Wold, S.2
  • 59
    • 0000669419 scopus 로고    scopus 로고
    • Comprehensive survey of combinatorial library synthesis: 2001
    • Dolle, R. E. Comprehensive survey of combinatorial library synthesis: 2001. J. Comb. Chem. 2002, 4, 369-418.
    • (2002) J. Comb. Chem. , vol.4 , pp. 369-418
    • Dolle, R.E.1
  • 60
    • 0035513630 scopus 로고    scopus 로고
    • Comprehensive survey of combinatorial library synthesis: 2000
    • Dolle, R. E. Comprehensive survey of combinatorial library synthesis: 2000. J. Comb. Chem. 2001, 3, 477-517.
    • (2001) J. Comb. Chem. , vol.3 , pp. 477-517
    • Dolle, R.E.1
  • 61
    • 14944378770 scopus 로고    scopus 로고
    • Molecular Discovery Ltd.: Pinner, Middlesex, U. K.
    • GRID, version 21; Molecular Discovery Ltd.: Pinner, Middlesex, U. K. http://moldiscovery.com.
    • GRID, Version 21
  • 62
    • 0037571112 scopus 로고    scopus 로고
    • Merck molecular force field. I. basis, form, scope, parametrization, and performance of MMFF94
    • Halgren, T. A. Merck Molecular Force Field. I. Basis, Form, Scope, Parametrization, and Performance of MMFF94. J. Comput. Chem. 1996, 17, 490-519.
    • (1996) J. Comput. Chem. , vol.17 , pp. 490-519
    • Halgren, T.A.1
  • 63
    • 0032738842 scopus 로고    scopus 로고
    • Evaluation of the FLEXX incremental construction algorithm for protein-ligand docking
    • Kramer, B.; Rarey, M.; Lengauer, T. Evaluation of the FLEXX incremental construction algorithm for protein-ligand docking. Proteins 1999, 37, 228-241.
    • (1999) Proteins , vol.37 , pp. 228-241
    • Kramer, B.1    Rarey, M.2    Lengauer, T.3


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