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Volumn 6, Issue 9, 2005, Pages 699-708

Synergy between sequence and size in large-scale genomics

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 23944504276     PISSN: 14710056     EISSN: None     Source Type: Journal    
DOI: 10.1038/nrg1674     Document Type: Review
Times cited : (245)

References (111)
  • 1
    • 84957790243 scopus 로고
    • L'acide désoxyribonucléique du noyau cellulaire dépositaire des caractères héréditaires; arguments d'ordre analytique
    • in French
    • Boivin, A., Vendrely, R. & Vendrely, C. L'acide dé soxyribonucléique du noyau cellulaire dépositaire des caractères héréditaires; arguments d'ordre analytique. C. R. Acad. Sci. 226, 1061-1063 (1948) (in French).
    • (1948) C. R. Acad. Sci. , vol.226 , pp. 1061-1063
    • Boivin, A.1    Vendrely, R.2    Vendrely, C.3
  • 2
    • 76549240988 scopus 로고
    • The desoxyribonucleic acid content of animal cells and its evolutionary significance
    • Mirsky, A. E. & Ris, H. The desoxyribonucleic acid content of animal cells and its evolutionary significance. J. Gen. Physiol. 34, 451-462 (1951).
    • (1951) J. Gen. Physiol. , vol.34 , pp. 451-462
    • Mirsky, A.E.1    Ris, H.2
  • 3
    • 0000822856 scopus 로고
    • The genetic organization of chromosomes
    • Thomas, C. A. The genetic organization of chromosomes. Annu. Rev. Genet. 5, 237-256 (1971).
    • (1971) Annu. Rev. Genet. , vol.5 , pp. 237-256
    • Thomas, C.A.1
  • 4
    • 33645436403 scopus 로고
    • (ed. Smith, H. H.) (Gordon and Breach, New York)
    • Ohno, S. in Evolution of Genetic Systems (ed. Smith, H. H.) 366-370 (Gordon and Breach, New York, 1972).
    • (1972) Evolution of Genetic Systems , pp. 366-370
    • Ohno, S.1
  • 5
    • 0015443431 scopus 로고
    • The structure and function of chromatin
    • Comings, D. E. The structure and function of chromatin. Adv. Hum. Genet. 3, 237-431 (1972).
    • (1972) Adv. Hum. Genet. , vol.3 , pp. 237-431
    • Comings, D.E.1
  • 6
    • 0018199859 scopus 로고
    • Nuclear volume control by nucleoskeletal DNA, selection for cell volume and cell growth rate, and the solution of the DNA C-value paradox
    • Cavalier-Smith, T. Nuclear volume control by nucleoskeletal DNA, selection for cell volume and cell growth rate, and the solution of the DNA C-value paradox. J. Cell Sci. 34, 247-278 (1978).
    • (1978) J. Cell Sci. , vol.34 , pp. 247-278
    • Cavalier-Smith, T.1
  • 7
    • 0018263844 scopus 로고
    • Why genes in pieces?
    • Gilbert, W. Why genes in pieces? Nature 271, 501 (1978).
    • (1978) Nature , vol.271 , pp. 501
    • Gilbert, W.1
  • 8
    • 0018894384 scopus 로고
    • Selfish genes, the phenotype paradigm and genome evolution
    • Doolittle, W. F. & Sapienza, C. Selfish genes, the phenotype paradigm and genome evolution. Nature 284, 601-603 (1980).
    • (1980) Nature , vol.284 , pp. 601-603
    • Doolittle, W.F.1    Sapienza, C.2
  • 9
    • 0018857680 scopus 로고
    • Selfish DNA: The ultimate parasite
    • Orgel, L. E. & Crick, F. H. C. Selfish DNA: the ultimate parasite. Nature 284, 604-607 (1980).
    • (1980) Nature , vol.284 , pp. 604-607
    • Orgel, L.E.1    Crick, F.H.C.2
  • 10
    • 85013777777 scopus 로고    scopus 로고
    • (ed. Gregory, T. R.) (Elsevier, San Diego)
    • Gregory, T. R. in The Evolution of the Genome (ed. Gregory, T. R.) 3-87 (Elsevier, San Diego, 2005). The author provides a comprehensive recent review of the evolution of genome size in animals.
    • (2005) The Evolution of the Genome , pp. 3-87
    • Gregory, T.R.1
  • 11
    • 84882468079 scopus 로고    scopus 로고
    • (ed. Gregory, T. R.) (Elsevier, San Diego)
    • Bennett, M. D. & Leitch, I. J. in The Evolution of the Genome (ed. Gregory, T. R.) 89-162 (Elsevier, San Diego, 2005). The authors provide a comprehensive recent review of the evolution of genome size in plants.
    • (2005) The Evolution of the Genome , pp. 89-162
    • Bennett, M.D.1    Leitch, I.J.2
  • 13
    • 0035090476 scopus 로고    scopus 로고
    • Coincidence, coevolution, or causation? DNA content, cell size, and the C-value enigma
    • Gregory, T. R. Coincidence, coevolution, or causation? DNA content, cell size, and the C-value enigma. Biol. Rev. 76, 65-101 (2001). This article outlines the key concepts in the study of the C-value enigma and the main theories that have been proposed to explain it.
    • (2001) Biol. Rev. , vol.76 , pp. 65-101
    • Gregory, T.R.1
  • 14
    • 0035207162 scopus 로고    scopus 로고
    • The bigger the C-value, the larger the cell: Genome size and red blood cell size in vertebrates
    • Gregory, T. R. The bigger the C-value, the larger the cell: genome size and red blood cell size in vertebrates. Blood Cells Mol. Dis. 27, 830-843 (2001).
    • (2001) Blood Cells Mol. Dis. , vol.27 , pp. 830-843
    • Gregory, T.R.1
  • 15
    • 19544376410 scopus 로고    scopus 로고
    • The C-value enigma in plants and animals: A review of parallels and an appeal for partnership
    • Gregory, T. R. The C-value enigma in plants and animals: a review of parallels and an appeal for partnership. Ann. Bot. 95, 133-146 (2005).
    • (2005) Ann. Bot. , vol.95 , pp. 133-146
    • Gregory, T.R.1
  • 16
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature 409, 860-921 (2001). This paper provides the first whole-scale view of the contents and characteristics of a relatively large animal genome.
    • (2001) Nature , vol.409 , pp. 860-921
  • 17
    • 85013777777 scopus 로고    scopus 로고
    • (ed. Gregory, T. R.) (Elsevier, San Diego)
    • Kidwell, M. G. in The Evolution of the Genome (ed. Gregory, T. R.) 165-221 (Elsevier, San Diego, 2005).
    • (2005) The Evolution of the Genome , pp. 165-221
    • Kidwell, M.G.1
  • 18
    • 0034160156 scopus 로고    scopus 로고
    • Transposable elements and host genome evolution
    • Kidwell, M. G. & Lisch, D. R. Transposable elements and host genome evolution. Trends Ecol. Evol. 15, 95-99 (2000).
    • (2000) Trends Ecol. Evol. , vol.15 , pp. 95-99
    • Kidwell, M.G.1    Lisch, D.R.2
  • 19
    • 0035105221 scopus 로고    scopus 로고
    • Transposable elements, parasitic DNA, and genome evolution
    • Kidwell, M. G. & Lisch, D. R. Transposable elements, parasitic DNA, and genome evolution. Evolution 55, 1-24 (2001).
    • (2001) Evolution , vol.55 , pp. 1-24
    • Kidwell, M.G.1    Lisch, D.R.2
  • 20
    • 13144255696 scopus 로고    scopus 로고
    • The ecology of the genome - Mobile DNA elements and their hosts
    • Brookfield, J. F. Y. The ecology of the genome - mobile DNA elements and their hosts. Nature Rev. Genet. 6, 128-136 (2005).
    • (2005) Nature Rev. Genet. , vol.6 , pp. 128-136
    • Brookfield, J.F.Y.1
  • 21
    • 0348048755 scopus 로고    scopus 로고
    • L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish
    • Furano, A. V., Duvernell, D. D. & Boissinot, S. L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish. Trends Genet. 20, 9-14 (2004).
    • (2004) Trends Genet. , vol.20 , pp. 9-14
    • Furano, A.V.1    Duvernell, D.D.2    Boissinot, S.3
  • 22
    • 85013777777 scopus 로고    scopus 로고
    • (ed. Gregory, T. R.) (Elsevier, San Diego)
    • Gregory, T. R. in The Evolution of the Genome (ed. Gregory, T. R.) 679-729 (Elsevier, San Diego, 2005). This chapter places emerging knowledge of genome evolution in the context of an expanded evolutionary theory, and highlights some key 'non-standard' genetic processes that have been important in various major evolutionary transitions.
    • (2005) The Evolution of the Genome , pp. 679-729
    • Gregory, T.R.1
  • 23
    • 0242318323 scopus 로고    scopus 로고
    • Mobile DNAs: The poacher turned gamekeeper
    • Brookfield, J. F. Y. Mobile DNAs: the poacher turned gamekeeper. Curr. Biol. 13, R846-R847 (2003).
    • (2003) Curr. Biol. , vol.13
    • Brookfield, J.F.Y.1
  • 24
    • 0037301560 scopus 로고    scopus 로고
    • Origin of a substantial fraction of human regulatory sequences from transposable elements
    • Jordan, I. K., Rogozin, I. B., Glazko, G. V. & Koonin, E. V. Origin of a substantial fraction of human regulatory sequences from transposable elements. Trends Genet. 19, 68-72 (2003). The authors suggest a significant rale for formerly parasitic elements in the evolution and function of complex genomes.
    • (2003) Trends Genet. , vol.19 , pp. 68-72
    • Jordan, I.K.1    Rogozin, I.B.2    Glazko, G.V.3    Koonin, E.V.4
  • 25
    • 11144245992 scopus 로고    scopus 로고
    • Transposition of hAT elements links transposable elements and V(D)J recombination
    • Zhou, L. et al. Transposition of hAT elements links transposable elements and V(D)J recombination. Nature 432, 995-1001 (2004). This article provides intriguing evidence for a link between formerly parasitic genomic elements and the evolution of the adaptive immune system of vertebrates.
    • (2004) Nature , vol.432 , pp. 995-1001
    • Zhou, L.1
  • 26
    • 0033567043 scopus 로고    scopus 로고
    • Silk worm Bm1 SINE RNA increases following cellular insults
    • Kimura, R. H., Choudary, P. V. & Schmid, C. W. Silk worm Bm1 SINE RNA increases following cellular insults. Nucleic Acids Res. 27, 3380-3387 (1999).
    • (1999) Nucleic Acids Res. , vol.27 , pp. 3380-3387
    • Kimura, R.H.1    Choudary, P.V.2    Schmid, C.W.3
  • 27
    • 0036021699 scopus 로고    scopus 로고
    • Transposable elements and the evolution of genome size in eukaryotes
    • Kidwell, M. G. Transposable elements and the evolution of genome size in eukaryotes. Genetica 115, 49-63 (2002).
    • (2002) Genetica , vol.115 , pp. 49-63
    • Kidwell, M.G.1
  • 28
    • 0345306751 scopus 로고    scopus 로고
    • The origins of genome complexity
    • Lynch, M. & Conery, J. S. The origins of genome complexity. Science 302, 1401-1404 (2003).
    • (2003) Science , vol.302 , pp. 1401-1404
    • Lynch, M.1    Conery, J.S.2
  • 29
    • 0032413101 scopus 로고    scopus 로고
    • Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons
    • SanMiguel, P. & Bennetzen, J. L. Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons. Ann. Bot. 82 (Suppl. A), 37-44 (1998). This paper describes the extraordinary influence that transposable elements can have on the evolution of genome size, even over relatively short timescales.
    • (1998) Ann. Bot. , vol.82 , Issue.SUPPL. A , pp. 37-44
    • Sanmiguel, P.1    Bennetzen, J.L.2
  • 30
    • 8544229065 scopus 로고    scopus 로고
    • Natural genetic variation caused by transposable elements in humans
    • Bennett, E. A., Coleman, L. E., Tsui, C., Pittard, W. S. & Devine, S. E. Natural genetic variation caused by transposable elements in humans. Genetics 168, 933-951 (2004).
    • (2004) Genetics , vol.168 , pp. 933-951
    • Bennett, E.A.1    Coleman, L.E.2    Tsui, C.3    Pittard, W.S.4    Devine, S.E.5
  • 31
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Mouse Genome Sequencing Consortium. Initial sequencing and comparative analysis of the mouse genome. Nature 420, 520-562 (2002).
    • (2002) Nature , vol.420 , pp. 520-562
  • 32
    • 0037162885 scopus 로고    scopus 로고
    • Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
    • Aparicio, S. et al. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297, 1301-1310 (2002).
    • (2002) Science , vol.297 , pp. 1301-1310
    • Aparicio, S.1
  • 33
    • 7244259101 scopus 로고    scopus 로고
    • Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
    • Jaillon, O. et al. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 431, 946-957 (2004). This article provides some of the most compelling evidence so far that a complete round of genome duplication occurred in an early ancestor of the bony fishes.
    • (2004) Nature , vol.431 , pp. 946-957
    • Jaillon, O.1
  • 34
    • 0037975554 scopus 로고    scopus 로고
    • Molecular paleontology of transposable elements in the Drosophila melanogaster genome
    • Kapitonov, V. V. & Jurka, J. Molecular paleontology of transposable elements in the Drosophila melanogaster genome. Proc. Natl Acad. Sci. USA 100, 6569-6574 (2003).
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 6569-6574
    • Kapitonov, V.V.1    Jurka, J.2
  • 35
    • 10644283823 scopus 로고    scopus 로고
    • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    • International Chicken Genome Sequencing Consortium. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432, 695-716 (2004).
    • (2004) Nature , vol.432 , pp. 695-716
  • 36
    • 1842684068 scopus 로고    scopus 로고
    • Genome sequence of the Brown Norway rat yields insights into mammalian evolution
    • Rat Genome Sequencing Project Consortium. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature 428, 493-521 (2004).
    • (2004) Nature , vol.428 , pp. 493-521
  • 38
    • 10344265019 scopus 로고    scopus 로고
    • A draft sequence for the genome of the domesticated silkworm (Bombyx mori)
    • Xia, Q. et al. A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science 306, 1937-1940 (2004).
    • (2004) Science , vol.306 , pp. 1937-1940
    • Xia, Q.1
  • 39
    • 0032509302 scopus 로고    scopus 로고
    • Genome sequence of the nematode C. elegans: A platform for investigating biology
    • C. elegans Sequencing Consortium. Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 282, 2012-2018 (1998).
    • (1998) Science , vol.282 , pp. 2012-2018
  • 40
    • 0031832807 scopus 로고    scopus 로고
    • Transposable elements and genome organization: A comprehensive survey of retrotransposons revealed by the complete Saccnaromyces cerevisiae genome sequence
    • Kim, J. M. et al. Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccnaromyces cerevisiae genome sequence. Genome Res. 8, 464-478 (1998).
    • (1998) Genome Res. , vol.8 , pp. 464-478
    • Kim, J.M.1
  • 41
    • 6344241315 scopus 로고    scopus 로고
    • Retroelement dynamics and a novel type of chordate retrovirus-like element in the miniature genome of the tunicate Oikopleura dioica
    • Volff, J.-N., Lehrach, H., Reinhardt, R. & Chourrout, D. Retroelement dynamics and a novel type of chordate retrovirus-like element in the miniature genome of the tunicate Oikopleura dioica. Mol. Biol. Evol. 21, 2022-2033 (2004).
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 2022-2033
    • Volff, J.-N.1    Lehrach, H.2    Reinhardt, R.3    Chourrout, D.4
  • 42
    • 0037015614 scopus 로고    scopus 로고
    • Genome sequence of the human malaria parasite Plasmodium falciparum
    • Gardner, M. J. et al. Genome sequence of the human malaria parasite Plasmodium falciparum. Nature 419, 498-511 (2002).
    • (2002) Nature , vol.419 , pp. 498-511
    • Gardner, M.J.1
  • 43
    • 0035936144 scopus 로고    scopus 로고
    • Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi
    • Katinka, M. D. et al. Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Nature 414, 450-453 (2001).
    • (2001) Nature , vol.414 , pp. 450-453
    • Katinka, M.D.1
  • 44
    • 11144355642 scopus 로고    scopus 로고
    • The Ashbya gosypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome
    • Dietrich, F. S. et al. The Ashbya gosypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome. Science 304, 304-307 (2004).
    • (2004) Science , vol.304 , pp. 304-307
    • Dietrich, F.S.1
  • 45
    • 0037464589 scopus 로고    scopus 로고
    • The genome sequence of the filamentous fungus Neurospora crassa
    • Galagan, J. E. et al. The genome sequence of the filamentous fungus Neurospora crassa. Nature 422, 859-868 (2003).
    • (2003) Nature , vol.422 , pp. 859-868
    • Galagan, J.E.1
  • 46
    • 0036180936 scopus 로고    scopus 로고
    • Molecular fossils in the human genome: Identification and analysis of the pseudogenes in chromosomes 21 and 22
    • Harrison, P. M. et al. Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22. Genome Res. 12, 272-280 (2002).
    • (2002) Genome Res. , vol.12 , pp. 272-280
    • Harrison, P.M.1
  • 47
    • 0037148758 scopus 로고    scopus 로고
    • The genome sequence of Schizosaccharomyces pombe
    • Wood, V., Gwilliam, R. & Rajandream, M.-A. The genome sequence of Schizosaccharomyces pombe. Nature 415, 871-880 (2002).
    • (2002) Nature , vol.415 , pp. 871-880
    • Wood, V.1    Gwilliam, R.2    Rajandream, M.-A.3
  • 48
    • 0037020194 scopus 로고    scopus 로고
    • Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster
    • Zbodnov, E. M. et al. Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster. Science 298, 149-159 (2002).
    • (2002) Science , vol.298 , pp. 149-159
    • Zbodnov, E.M.1
  • 49
    • 0035058360 scopus 로고    scopus 로고
    • Evolution of genome size: New approaches to an old problem
    • Petrov, D. A. Evolution of genome size: new approaches to an old problem. Trends Genet. 17, 23-28 (2001).
    • (2001) Trends Genet. , vol.17 , pp. 23-28
    • Petrov, D.A.1
  • 50
    • 0346158529 scopus 로고    scopus 로고
    • Insertion-deletion biases and the evolution of genome size
    • Gregory, T. R. Insertion-deletion biases and the evolution of genome size. Gene 324, 15-34 (2004).
    • (2004) Gene , vol.324 , pp. 15-34
    • Gregory, T.R.1
  • 51
    • 1642473033 scopus 로고    scopus 로고
    • Comparative analysis of processed pseudogenes in the mouse and human genomes
    • Zhang, Z., Carriero, N. & Gerstein, M. Comparative analysis of processed pseudogenes in the mouse and human genomes. Trends Genet. 20, 62-67 (2004).
    • (2004) Trends Genet. , vol.20 , pp. 62-67
    • Zhang, Z.1    Carriero, N.2    Gerstein, M.3
  • 52
    • 0030947344 scopus 로고    scopus 로고
    • Molecular evidence for an ancient duplication of the entire yeast genome
    • Wolfe, K. H. & Shields, D. C. Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387, 708-713 (1997).
    • (1997) Nature , vol.387 , pp. 708-713
    • Wolfe, K.H.1    Shields, D.C.2
  • 53
    • 13144282727 scopus 로고    scopus 로고
    • A bunch of fun-guys: The whole-genome view of yeast evolution
    • Ochman, H., Daubin, V. & Lerat, E. A bunch of fun-guys: the whole-genome view of yeast evolution. Trends Genet. 21, 1-3 (2005).
    • (2005) Trends Genet. , vol.21 , pp. 1-3
    • Ochman, H.1    Daubin, V.2    Lerat, E.3
  • 54
    • 3042720475 scopus 로고    scopus 로고
    • Genome evolution in yeasts
    • Dujon, B. et al. Genome evolution in yeasts. Nature 430, 35-44 (2004).
    • (2004) Nature , vol.430 , pp. 35-44
    • Dujon, B.1
  • 56
    • 20144366003 scopus 로고    scopus 로고
    • The genomes of Oryza sativa: A history of duplications
    • Yu, J. et al. The genomes of Oryza sativa: a history of duplications. PLoS Biol. 3, 267-281 (2005).
    • (2005) PLoS Biol. , vol.3 , pp. 267-281
    • Yu, J.1
  • 57
    • 0037109058 scopus 로고    scopus 로고
    • The hidden duplication past of Arabidopsis thaliana
    • Simillion, C., Vanepoele, K., Van Montagu, M. C. E., Zabeau, M. & Van de Peer, Y. The hidden duplication past of Arabidopsis thaliana. Proc. Natl Acad. Sci. USA 99, 13627-13632 (2002). The authors dicuss the ancient genome duplication that occurred in this tiny-genomed flowering plant; this evidence raises the possibility that all angiosperms have polyploidy in their ancestry.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 13627-13632
    • Simillion, C.1    Vanepoele, K.2    Van Montagu, M.C.E.3    Zabeau, M.4    Van De Peer, Y.5
  • 60
    • 0036613237 scopus 로고    scopus 로고
    • Extensive genomic duplication during early chordate evolution
    • McLysaght, A., Hokamp, K. & Wolfe, K. H. Extensive genomic duplication during early chordate evolution. Nature Genet. 31, 200-204 (2002).
    • (2002) Nature Genet. , vol.31 , pp. 200-204
    • McLysaght, A.1    Hokamp, K.2    Wolfe, K.H.3
  • 61
    • 15244344647 scopus 로고    scopus 로고
    • DNA repeat arrays in chicken and human genomes and the adaptive evolution of avian genome size
    • Hughes, A. L. & Piontkivska, H. DNA repeat arrays in chicken and human genomes and the adaptive evolution of avian genome size. BMC Evol. Biol. 5, 12 (2005).
    • (2005) BMC Evol. Biol. , vol.5 , pp. 12
    • Hughes, A.L.1    Piontkivska, H.2
  • 62
    • 0036045092 scopus 로고    scopus 로고
    • Origin and evolution of avian minichromosomes
    • Burt, D. W. Origin and evolution of avian minichromosomes. Cytogenet. Genome Res. 96, 97-112 (2002).
    • (2002) Cytogenet. Genome Res. , vol.96 , pp. 97-112
    • Burt, D.W.1
  • 63
    • 0036006429 scopus 로고    scopus 로고
    • A bird's-eye view of the C-value enigma: Genome size, cell size, and metabolic rate in the class Aves
    • Gregory, T. R. A bird's-eye view of the C-value enigma: genome size, cell size, and metabolic rate in the class Aves. Evolution 56, 121-130 (2002).
    • (2002) Evolution , vol.56 , pp. 121-130
    • Gregory, T.R.1
  • 64
    • 0034708480 scopus 로고    scopus 로고
    • The genome sequence of Drosophila melanogaster
    • Adams, M. D. et al. The genome sequence of Drosophila melanogaster. Science 287, 2185-2195 (2000).
    • (2000) Science , vol.287 , pp. 2185-2195
    • Adams, M.D.1
  • 65
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796-815 (2000).
    • (2000) Nature , vol.408 , pp. 796-815
  • 66
    • 0037381673 scopus 로고    scopus 로고
    • Comparisons with Caenorhabditis (∼100 Mb) and Drosophila (∼175 Mb) using flow cytometry show genome size in Arabidopsis to be ∼157 Mb and thus ∼25% larger than the Arabidopsis Genome Initiative estimate of ∼125 Mb
    • Bennett, M. D., Leiten, I. J., Price, H. J. & Johnston, J. S. Comparisons with Caenorhabditis (∼100 Mb) and Drosophila (∼175 Mb) using flow cytometry show genome size in Arabidopsis to be ∼157 Mb and thus ∼25% larger than the Arabidopsis Genome Initiative estimate of ∼125 Mb. Ann. Bot. 91, 547-557 (2003). This paper demonstrates the crucial importance of using best-practice techniques in the analysis of genome size, and highlights the potential problems involved in estimating genome size by using only sequence data.
    • (2003) Ann. Bot. , vol.91 , pp. 547-557
    • Bennett, M.D.1    Leiten, I.J.2    Price, H.J.3    Johnston, J.S.4
  • 68
    • 1942520266 scopus 로고    scopus 로고
    • Testing genome complexity
    • Vinogradov, A. E. Testing genome complexity. Science 304, 389-390 (2004).
    • (2004) Science , vol.304 , pp. 389-390
    • Vinogradov, A.E.1
  • 69
    • 0345070506 scopus 로고    scopus 로고
    • Mutational equilibrium model of genome size evolution
    • Petrov, D. A. Mutational equilibrium model of genome size evolution. Theor. Popul. Biol. 61, 533-546 (2002).
    • (2002) Theor. Popul. Biol. , vol.61 , pp. 533-546
    • Petrov, D.A.1
  • 71
    • 0037270551 scopus 로고    scopus 로고
    • Beenomes to Bombyx: Future directions in applied insect genomics
    • Evans, J. D. & Gundersen-Rindal, D. Beenomes to Bombyx: future directions in applied insect genomics. Genome Biol. 4, 107 (2003).
    • (2003) Genome Biol. , vol.4 , pp. 107
    • Evans, J.D.1    Gundersen-Rindal, D.2
  • 72
    • 0036008834 scopus 로고    scopus 로고
    • Genome size and microsatellites: The effect of nuclear size on amplification potential
    • Garner, T. W. J. Genome size and microsatellites: the effect of nuclear size on amplification potential. Genome 45, 212-215 (2002).
    • (2002) Genome , vol.45 , pp. 212-215
    • Garner, T.W.J.1
  • 73
    • 21644466853 scopus 로고    scopus 로고
    • The effects of DNA content (C-value) on the quality and utility of AFLP fingerprints
    • Fay, M. F., Cowan, R. S. & Leitch, I. J. The effects of DNA content (C-value) on the quality and utility of AFLP fingerprints. Ann. Bot. 95, 237-246 (2005).
    • (2005) Ann. Bot. , vol.95 , pp. 237-246
    • Fay, M.F.1    Cowan, R.S.2    Leitch, I.J.3
  • 74
    • 21644481551 scopus 로고    scopus 로고
    • Nuclear DNA amounts in angiosperms: Progress, problems and prospects
    • Bennett, M. D. & Leitch, I. J. Nuclear DNA amounts in angiosperms: progress, problems and prospects. Ann. Bot. 95, 45-90 (2005).
    • (2005) Ann. Bot. , vol.95 , pp. 45-90
    • Bennett, M.D.1    Leitch, I.J.2
  • 75
    • 0033569629 scopus 로고    scopus 로고
    • Keeping genome databases clean and up to date
    • Pennisi, E. Keeping genome databases clean and up to date. Science 286, 447-450 (1999).
    • (1999) Science , vol.286 , pp. 447-450
    • Pennisi, E.1
  • 76
    • 0142155182 scopus 로고    scopus 로고
    • Righting the wrongs
    • Hadley, C. Righting the wrongs. EMBO Rep. 4, 829-831 (2003).
    • (2003) EMBO Rep. , vol.4 , pp. 829-831
    • Hadley, C.1
  • 78
    • 0036290221 scopus 로고    scopus 로고
    • From pixels to picograms: A beginners' guide to genome quantification by Feulgen image analysis densitometry
    • Hardie, D. C., Gregory, T. R. & Hebert, P. D. N. From pixels to picograms: a beginners' guide to genome quantification by Feulgen image analysis densitometry. J. Histochem. Cytochem. 50, 735-749 (2002).
    • (2002) J. Histochem. Cytochem. , vol.50 , pp. 735-749
    • Hardie, D.C.1    Gregory, T.R.2    Hebert, P.D.N.3
  • 79
    • 19944376130 scopus 로고    scopus 로고
    • Preparation of samples for comparative studies of arthropod chromosomes: Visualization, in situ hybridization, and genome size estimation
    • DeSalle, R., Gregory, T. R. & Johnston, J. S. Preparation of samples for comparative studies of arthropod chromosomes: visualization, in situ hybridization, and genome size estimation. Meth. Enzymol. 395, 460-488 (2005).
    • (2005) Meth. Enzymol. , vol.395 , pp. 460-488
    • Desalle, R.1    Gregory, T.R.2    Johnston, J.S.3
  • 80
    • 21644446318 scopus 로고    scopus 로고
    • Plant DNA flow cytometry and estimation of nuclear genome size
    • Dolezel, J. & Bartos, J. Plant DNA flow cytometry and estimation of nuclear genome size. Ann. Bot. 95, 99-110 (2005).
    • (2005) Ann. Bot. , vol.95 , pp. 99-110
    • Dolezel, J.1    Bartos, J.2
  • 81
    • 7244259100 scopus 로고    scopus 로고
    • Megabase deletions of gene deserts result in viable mice
    • Nóbrega, M. A., Zhu, Y., Plajzer-Frick, I., Afzal, V. & Rubin, E. M. Megabase deletions of gene deserts result in viable mice. Nature 431, 988-993 (2004).
    • (2004) Nature , vol.431 , pp. 988-993
    • Nóbrega, M.A.1    Zhu, Y.2    Plajzer-Frick, I.3    Afzal, V.4    Rubin, E.M.5
  • 82
    • 7244245762 scopus 로고    scopus 로고
    • Finishing the euchromatic sequence of the human genome
    • International Human Genome Sequencing Consortium. Finishing the euchromatic sequence of the human genome. Nature 431, 931-945 (2004).
    • (2004) Nature , vol.431 , pp. 931-945
  • 83
    • 0035895513 scopus 로고    scopus 로고
    • What if there are only 30,000 human genes?
    • Claverie, J.-M. What if there are only 30,000 human genes? Science 291, 1255-1257 (2001).
    • (2001) Science , vol.291 , pp. 1255-1257
    • Claverie, J.-M.1
  • 84
    • 0036021702 scopus 로고    scopus 로고
    • Expansion of genome coding regions by acquisition of new genes
    • Betrán, E. & Long, M. Expansion of genome coding regions by acquisition of new genes. Genetica 115, 65-80 (2002).
    • (2002) Genetica , vol.115 , pp. 65-80
    • Betrán, E.1    Long, M.2
  • 85
    • 0035992053 scopus 로고    scopus 로고
    • The G-value paradox
    • Hahn, M. W. & Wray, G. A. The G-value paradox. Evol. Dev. 4, 73-75 (2002).
    • (2002) Evol. Dev. , vol.4 , pp. 73-75
    • Hahn, M.W.1    Wray, G.A.2
  • 88
    • 0036061848 scopus 로고    scopus 로고
    • Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis
    • Devos, K. M., Brown, J. K. M. & Bennetzen, J. L. Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis. Genome Res. 12, 1075-1079 (2002).
    • (2002) Genome Res. , vol.12 , pp. 1075-1079
    • Devos, K.M.1    Brown, J.K.M.2    Bennetzen, J.L.3
  • 89
    • 21644437476 scopus 로고    scopus 로고
    • Mechanisms of recent genome size variation in flowering plants
    • Bennetzen, J. L., Ma, J. & Devos, K. M. Mechanisms of recent genome size variation in flowering plants. Ann. Bot. 95, 127-132 (2005).
    • (2005) Ann. Bot. , vol.95 , pp. 127-132
    • Bennetzen, J.L.1    Ma, J.2    Devos, K.M.3
  • 90
    • 0037342581 scopus 로고    scopus 로고
    • Differences in the processing of DNA ends in Arabidopsis thaliana and tobacco: Possible implications for genome evolution
    • Orel, N. & Puchta, H. Differences in the processing of DNA ends in Arabidopsis thaliana and tobacco: possible implications for genome evolution. Plant Mol. Biol. 51, 523-531 (2003).
    • (2003) Plant Mol. Biol. , vol.51 , pp. 523-531
    • Orel, N.1    Puchta, H.2
  • 91
    • 1242277765 scopus 로고    scopus 로고
    • Dissimilar mutation and recombination rates in Arabidopsis and tobacco
    • Filkowski, J., Kovalchuk, O. & Kovalchuk, I. Dissimilar mutation and recombination rates in Arabidopsis and tobacco. Plant Sci. 166, 265-272 (2004).
    • (2004) Plant Sci. , vol.166 , pp. 265-272
    • Filkowski, J.1    Kovalchuk, O.2    Kovalchuk, I.3
  • 92
  • 93
    • 0019796639 scopus 로고
    • Population genetics of selfish DNA
    • Ohta, T. Population genetics of selfish DNA. Nature 292, 648-649 (1981).
    • (1981) Nature , vol.292 , pp. 648-649
    • Ohta, T.1
  • 94
    • 0020447816 scopus 로고
    • Selfish DNA: A sexually-transmitted nuclear parasite
    • Hickey, D. A. Selfish DNA: a sexually-transmitted nuclear parasite. Genetics 101, 519-531 (1982).
    • (1982) Genetics , vol.101 , pp. 519-531
    • Hickey, D.A.1
  • 95
    • 0002155065 scopus 로고
    • The population biology of transposable elements
    • Charlesworth, B. The population biology of transposable elements. Trends Ecol. Evol. 2, 21-23 (1987).
    • (1987) Trends Ecol. Evol. , vol.2 , pp. 21-23
    • Charlesworth, B.1
  • 96
    • 0028108183 scopus 로고
    • The evolutionary dynamics of repetitive DNA in eukaryotes
    • Charlesworth, B., Sniegowski, P. & Stephan, W. The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371, 215-220 (1994).
    • (1994) Nature , vol.371 , pp. 215-220
    • Charlesworth, B.1    Sniegowski, P.2    Stephan, W.3
  • 97
    • 0033533150 scopus 로고    scopus 로고
    • Genomic demography: A life-history analysis of transposable element evolution
    • Promislow, D. E. L., Jordan, I. K. & McDonald, J. F. Genomic demography: a life-history analysis of transposable element evolution. Proc. R. Soc. Lond. B 266, 1555-1560 (1999).
    • (1999) Proc. R. Soc. Lond. B , vol.266 , pp. 1555-1560
    • Promislow, D.E.L.1    Jordan, I.K.2    McDonald, J.F.3
  • 98
    • 0034687755 scopus 로고    scopus 로고
    • Transposable elements in sexual and ancient asexual taxa
    • Arkhipova, I. & Meselson, M. Transposable elements in sexual and ancient asexual taxa. Proc. Natl Acad. Sci. USA 97, 14473-14477 (2000).
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 14473-14477
    • Arkhipova, I.1    Meselson, M.2
  • 99
    • 0034237569 scopus 로고    scopus 로고
    • Persistence of selfish genetic elements: Population structure and conflict
    • Hatcher, M. J. Persistence of selfish genetic elements: population structure and conflict. Trends Ecol. Evol. 15, 271-277 (2000).
    • (2000) Trends Ecol. Evol. , vol.15 , pp. 271-277
    • Hatcher, M.J.1
  • 100
    • 0034088304 scopus 로고    scopus 로고
    • Transposable elements and asexual reproduction
    • Schön, I. & Martens, K. Transposable elements and asexual reproduction. Trends. Evol. 15, 287-288 (2000).
    • (2000) Trends. Evol. , vol.15 , pp. 287-288
    • Schön, I.1    Martens, K.2
  • 101
    • 0036021694 scopus 로고    scopus 로고
    • Feast and famine in plant genomes
    • Wendel, J. F., Cronn, R. C., Johnston, J. S. & Price, H. J. Feast and famine in plant genomes. Genetica 115, 37-47 (2002). The authors show that genome sizes can change both by increasing and decreasing, even within a narrow taxonomic range.
    • (2002) Genetica , vol.115 , pp. 37-47
    • Wendel, J.F.1    Cronn, R.C.2    Johnston, J.S.3    Price, H.J.4
  • 102
    • 20344395262 scopus 로고    scopus 로고
    • Evolution of DNA amounts across land plants (Embryophyta)
    • Leitch, I. J., Soltis, D. E., Soltis, P. S. & Bennett, M. D. Evolution of DNA amounts across land plants (Embryophyta). Ann. Bot. 95, 207-217 (2005).
    • (2005) Ann. Bot. , vol.95 , pp. 207-217
    • Leitch, I.J.1    Soltis, D.E.2    Soltis, P.S.3    Bennett, M.D.4
  • 103
    • 84986467075 scopus 로고
    • An attempt to reconstruct evolutionary changes in the cellular DNA content of lungfish
    • Thomson, K. S. An attempt to reconstruct evolutionary changes in the cellular DNA content of lungfish. J. Exp. Zool. 180, 363-372 (1972).
    • (1972) J. Exp. Zool. , vol.180 , pp. 363-372
    • Thomson, K.S.1
  • 104
    • 84987553948 scopus 로고
    • Estimation of cell size and DNA content in fossil fishes and amphibians
    • Thomson, K. S. & Muraszko, K. Estimation of cell size and DNA content in fossil fishes and amphibians. J. Exp. Zool. 205, 315-320 (1978).
    • (1978) J. Exp. Zool. , vol.205 , pp. 315-320
    • Thomson, K.S.1    Muraszko, K.2
  • 105
    • 0023822004 scopus 로고
    • Genome size in conodonts (Chordata): Inferred variations during 270 million years
    • Conway Morris, S. & Harper, E. Genome size in conodonts (Chordata): inferred variations during 270 million years. Science 241, 1230-1232 (1988).
    • (1988) Science , vol.241 , pp. 1230-1232
    • Conway Morris, S.1    Harper, E.2
  • 106
    • 0028184403 scopus 로고
    • Stomatal size in fossil plants: Evidence for polyploidy in a majority of angiosperms
    • Masterson, J. Stomatal size in fossil plants: evidence for polyploidy in a majority of angiosperms. Science 264, 421-424 (1994).
    • (1994) Science , vol.264 , pp. 421-424
    • Masterson, J.1
  • 108
    • 0035214768 scopus 로고    scopus 로고
    • Most of the human genome is transcribed
    • Wong, G. K.-S., Passey, D. A. & Yu, J. Most of the human genome is transcribed. Genome Res. 11, 1975-1977 (2001).
    • (2001) Genome Res. , vol.11 , pp. 1975-1977
    • Wong, G.K.-S.1    Passey, D.A.2    Yu, J.3
  • 109
    • 0032876994 scopus 로고    scopus 로고
    • Intron-genome size relationship on a large evolutionary scale
    • Vinogradov, A. E. Intron-genome size relationship on a large evolutionary scale. J. Mol. Evol. 49, 376-384 (1999).
    • (1999) J. Mol. Evol. , vol.49 , pp. 376-384
    • Vinogradov, A.E.1
  • 110
  • 111
    • 0036897696 scopus 로고    scopus 로고
    • Intron size and genome size in plants
    • Wendel, J. F. et al. Intron size and genome size in plants. Mol. Biol. Evol. 19, 2346-2352 (2002).
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 2346-2352
    • Wendel, J.F.1


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