A bunch of fun-guys: The whole-genome view of yeast evolution

Trends in Genetics

Volumn 21, Issue 1, 2005, Pages 1-3

  Ochman, Howard ^a   Daubin, Vincent ^a   Lerat, Emmanuelle ^b  

^a UNIVERSITY OF ARIZONA   (United States)

^b University of Arizona   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL CHROMOSOME; CANDIDA GLABRATA; DIPLOIDY; ESCHERICHIA COLI; FUNGAL GENE; GENE DUPLICATION; GENE LOSS; GENE ORDER; GENETIC VARIABILITY; GENOME; KLUYVEROMYCES; MOLECULAR EVOLUTION; NONHUMAN; PLOIDY; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; SALMONELLA ENTERICA; SHORT SURVEY; SPECIES COMPARISON; YARROWIA; YEAST;

CANDIDA GLABRATA; EVOLUTION, MOLECULAR; GENE DUPLICATION; GENOME, FUNGAL; PHYLOGENY; SACCHAROMYCES CEREVISIAE;

BACTERIA (MICROORGANISMS); CANDIDA; CANDIDA GLABRATA; ESCHERICHIA COLI; KLUYVEROMYCES; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE; SALMONELLA; SALMONELLA ENTERICA; YARROWIA;

EID: 13144282727     PISSN: 01689525     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tig.2004.11.006     Document Type: Short Survey

References (20)

1. D.C. Wallace, and H.J. Morowitz Genome size and evolution Chromosoma 40 1973 121 126
2. A.H. Sparrow, and A.F. Nauman Evolution of genome size by DNA doublings Science 192 1976 524 529
3. D.A. Hopwood Genetic analysis and genome structure in Streptomyces coelicolor Bacteriol. Rev. 31 1967 373 403
4. M. Riley, and A. Anilionis Evolution of the bacterial genome Annu. Rev. Microbiol. 32 1978 519 560
5. K.H. Wolfe, and D.C. Shields Molecular evidence for an ancient duplication of the entire yeast genome Nature 387 1997 708 713
6. F.S. Dietrich The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome Science 304 2004 304 307
7. M. Kellis Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae Nature 428 2004 617 624
8. J.C. Davis, and D.A. Petrov Preferential duplication of conserved proteins in eukaryotic genomes PLoS Biol. 2 2004 E55
9. S. Ohno Evolution by Gene Duplication 1970 Springer-Verlag
10. B. Dujon Genome evolution in yeasts Nature 430 2004 35 44
11. V. Daubin, and H. Ochman Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli Genome Res. 14 2004 1036 1042
12. M.A. Huynen Exploitation of gene context Curr. Opin. Struct. Biol. 10 2000 366 370
13. M.B. Schmid, and J.R. Roth Gene location affects expression level in Salmonella typhimurium J. Bacteriol. 169 1987 2872 2875
14. A. Segall Rearrangement of the bacterial chromosome: forbidden inversions Science 241 1988 1314 1318
15. E.P. Rocha The replication-related organization of bacterial genomes Microbiology 150 2004 1609 1627
16. S.L. Liu, and K.E. Sanderson Rearrangements in the genome of the bacterium Salmonella typhi Proc. Natl. Acad. Sci. U. S. A. 92 1995 1018 1022
17. Eisen, J.A. et al. (2000) Evidence for symmetric chromosomal inversions around the replication origin in bacteria. Genome Biol. 1, RESEARCH0011 doi:10.1186/gb-2000-1-6-research0011 (http://genomebiology.com/2000/1/6/ research/0011)
18. M. Suyama, and P. Bork Evolution of prokaryotic gene order: genome rearrangements in closely related species Trends Genet. 17 2001 10 13
19. E.R. Tillier, and R.A. Collins Genome rearrangement by replication-directed translocation Nat. Genet. 26 2000 195 197
20. E. Lerat From gene trees to organismal phylogeny in prokaryotes: The case of the gamma-Proteobacteria PLoS Biol. 1 2003 101 119