Dissimilar mutation and recombination rates in Arabidopsis and tobacco

Plant Science

Volumn 166, Issue 2, 2004, Pages 265-272

  Filkowski, Jody ^a   Kovalchuk, Olga ^a   Kovalchuk, Igor ^a  

^a UNIVERSITY OF LETHBRIDGE   (Canada)

Author keywords

Arabidopsis; Genome evolution; Mutation rate; Recombination rate; Tobacco

Indexed keywords

CLONING; MUTAGENESIS;

GENOME RESHUFFLING; POLYMORPHISM;

PLANTS (BOTANY);

ARABIDOPSIS; NICOTIANA OBTUSIFOLIA; NICOTIANA TABACUM;

EID: 1242277765     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2003.09.016     Document Type: Article

References (53)

1. Lin Y., Lukacsovich T., Waldman A.S. Multiple pathways for repair of DNA double-strand breaks in mammalian chromosomes. Mol. Cell. Biol. 19:1999;8353-8360.
2. Kirik A., Salomon S., Puchta H. Species-specific double-strand break repair and genome evolution in plants. EMBO J. 19:2000;5562-5566.
3. Petrov D.A., Sangster T.A., Johnston J.S., Hartl D.L., Shaw K.L. Evidence for DNA loss as a determinant of genome size. Science. 287:2000;1060-1062.
4. Petrov D.A. Evolution of genome size: new approaches to an old problem. Trends Genet. 17:2001;23-28.
5. Mirsky A.E., Ris H. The DNA content of animal cells and its evolutionary significance. J. Gen. Physiol. 34:1951;451-462.
6. Thomas C.A. The genetic organization of chromosomes. Annu. Rev. Genet. 5:1971;237-256.
7. Gregory T.R., Hebert P.D. The modulation of DNA content: proximate causes and ultimate consequences. Genome Res. 9:1999;317-324.
8. Bennet M.D. The duration of meiosis. Proc. R. Soc. London, Ser. B: Biol. Sci. 178:1971;259-275.
9. Vinogradov A.E. Buffering: a possible passive-homeostasis role for redundant DNA. J. Theor. Biol. 193:1998;197-199.
10. Roth G., Blanke J., Wake D.B. Cell size predicts morphological complexity in the brains of frogs and salamanders. Proc. Natl. Acad. Sci. U.S.A. 91:1994;4796-4800.
11. Critchlow S., Jackson S. DNA end-joining: from yeast to man. TIBS. 23:1998;394-402.
12. Ray A., Langer M. Homologous recombination: ends as the means. Trends Plant Sci. 7:2002;435-440.
13. Roth D., Wilson J. Nonhomologous recombination in mammalian cells: role for short sequence homologies in the joining reaction. Mol. Cell. Biol. 6:1986;4295-4304.
14. Jeggo P.A. DNA breakage and repair. Adv. Genet. 38:1998;185-218.
15. Keeney S. Mechanism and control of meiotic recombination initiation. Curr. Top. Dev. Biol. 52:2001;1-53.
16. Martini E., Keeney S. Sex and the single (double-strand) break. Mol Cell. 9:2002;700-702.
17. Sargent R., Brenneman M., Wilson J. Repair of site-specific double-strand breaks in a mammalian chromosome by homologous and illegitimate recombination. Mol. Cell. Biol. 17:1997;267-277.
18. Pfeiffer P. The mutagenic potential of DNA double-strand break repair. Toxicol. Lett. 96-97:1998;119-129.
19. Essers J., van Steeg H., de Wit J., Swagemakers S., Vermeij M., Hoeijmakers J., Kanaar R. Homologous and nonhomologous recombination differentially affect DNA damage repair in mice. EMBO J. 19:2000;1703-1710.
20. Hagmann M., Adlkofer K., Pfeiffer P., Bruggmann R., Georgiev O., Rungger D., Schaffner W. Dramatic changes in the ratio of homologous recombination to nonhomologous DNA-end joining in oocytes and early embryos of Xenopus laevis. Biol. Chem. Hoppe-Seyler. 377:1996;239-250.
21. Orel N., Puchta H. Differences in the processing of DNA ends in Arabidopsis thaliana and tobacco: possible implications for genome evolution. Plant Mol. Biol. 51:2003;523-531.
22. Swoboda P., Gal S., Hohn B., Puchta H. Intrachromosomal homologous recombination in whole plants. EMBO J. 13:1994;484-489.
23. Puchta H., Swoboda P., Hohn B. Induction of homologous DNA recombination in whole plants. Plant J. 7:1995;203-210.
24. Kovalchuk I., Kovalchuk O., Arkhipov A., Hohn B. Transgenic Plants are sensitive bioindicators of nuclear pollution caused by the chernobyl accident. Nat. Biotechnol. 16:1998;1054-1057.
25. Ries G., Heller W., Puchta H., Sandermann H., Seidlitz H.K., Hohn B. Elevated UV-B radiation reduces genome stability in plants. Nature. 406:2000;98-101.
26. Kovalchuk O., Titov V., Hohn B., Kovalchuk I. A sensitive transgenic plant system to detect toxic inorganic compounds in the environment. Nat. Biotechnol. 19:2001;568-572.
27. Drake J., Charlesworth B., Charlesworth D., Crow J. Rates of spontaneous mutation. Genetics. 148:1998;1667-1686.
28. Schultz S., Lynch M., Willis J. Spontaneous deleterious mutation in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 96:1999;11393-11398.
29. Kovalchuk I., Kovalchuk O., Hohn B. Genome-wide variation of the somatic mutation frequency in transgenic plants. EMBO J. 19:2000;4431-4438.
30. Walbot W. On the life strategies of plants and animals. Trends Genet. 1:1985;165-170.
31. Britt A.B. Repair of DNA damage induced by ultraviolet radiation. Plant Physiol. 108:1995;891-896.
32. Masson J.E., King P.J., Paszkowski J. Mutants of Arabidopsis thaliana hypersensitive to DNA-damaging treatments. Genetics. 146:1997;401-407.
33. Tuteja N., Singh M.B., Misra M.K., Bhalla P.L., Tuteja R. Molecular mechanisms of DNA damage and repair: progress in plants. Crit. Rev. Biochem. Mol. Biol. 36:2001;337-397.
34. Hollosy F. Effects of ultraviolet radiation on plant cells. Micron. 33:2002;179-197.
35. Jenkins M.E., Harlow G.R., Liu Z., Shotwell M.A., Ma J., Mount D.W. Radiation-sensitive mutants of Arabidopsis thaliana. Genetics. 140:1995;725-732.
36. Jiang C.Z., Yee J., Mitchell D.L., Britt A.B. Photorepair mutants of Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 94:1997;7441-7445.
37. Jiang C.Z., Yen C.N., Cronin K., Mitchell D., Britt A.B. UV- and gamma-radiation sensitive mutants of Arabidopsis thaliana. Genetics. 147:1997;1401-1409.
38. Hefner E., Preuss S.B., Britt A.B. Arabidopsis mutants sensitive to gamma radiation include the homologue of the human repair gene ERCC1. J. Exp. Bot. 54:2003;669-680.
39. Preuss S.B., Britt A.B. A DNA-damage-induced cell cycle checkpoint in Arabidopsis. Genetics. 164:2003;323-334.
40. Gorbunova V., Avivi-Ragolski N., Shalev G., Kovalchuk I., Abbo S., Hohn B., Levy A. A new hyper-recombinagenic mutant of Nicotiana tabacum. Plant J. 24:2000;601-611.
41. Mattanovich D., Ruker F., da Camara Machado A., Laimer M., Regner F., Steinkellner H., Himmler G., Katinger H. Efficient transformation of Agrobacterium spp. by electroporation. Nucleic Acids Res. 17:1989;6747.
42. Zijlstra C., Hohn T. Cauliflower mosaic virus gene vi controls translation from dicistronic expression units in transgenic Arabidopsis plants. Plant Cell. 4:1992;1471-1484.
43. Tinland B., Schoumacher F., Gloeckler V., Bravo-Angel A.M., Hohn B. The Agrobacterium tumefaciens virulence D2 protein is responsible for precise integration of T-DNA into the plant genome. EMBO J. 14:1995;3585.
44. Jefferson R. Assaying chimeric genes in plants: the GUS gene fusion system. Plant Mol. Biol. Rep. 5:1987;387-405.
45. Swoboda P., Hohn B., Gal S. Somatic homologous recombination in planta: the recombination frequency is dependent on the allelic state of recombining sequences and may be influenced by genomic position effects. Mol. Gen. Genet. 237:1993;33-40.
46. Galbraith D., Harkins K., Knapp S. Systemic endopolyploidy in Arabidopsis thaliana. Plant Physiol. 96:1991;985-989.
47. Edgar B., Orr-Weaver T. Endoreduplication cell cycles: more for less. Cell. 105:2001;297-306.
48. Mizukami Y. A matter of size: developmental control of organ size in plants. Curr. Opin. Plant Biol. 4:2001;533-539.
49. Melaragno E., Mehrotra B., Coleman A. Relationship between endopolyploidy and cell size in epidermal tissue of Arabidopsis. Plant Cell. 11:1993;1661-1668.
50. Narayan R.K.J. Nuclear DNA changes, genome differentiation and evolution in Nicotiana (Solanaceae). Plant Syst. Evol. 157:1987;161-180.
51. Quelo A.-H., Bryant J., Verbelen J.-P. Endoreduplication is not inhibited but induced by aphidicolin in cultured cells of tobacco. J. Exp. Bot. 53:2002;669-675.
52. Draper C.K., Hays J.B. Replication of chloroplast, mitochondrial, and nuclear DNA during growth of unirradiated and UVB-irradiated Arabidopsis leaves. Plant J. 23:2000;255-265.
53. Tsukamoto Y., Ikeda H. Double-strand break repair mediated by DNA end-joining. Genes Cells Rev. 3:1998;135-144.