Fluorescence correlation spectroscopy with autofluorescent proteins

Advances in Biochemical Engineering/Biotechnology

Volumn 95, Issue , 2005, Pages 107-142

  Kohl, Tobias ^a   Schwille, Petra ^b,c  

^a TU Dresden ^*  (Germany)

^b DRESDEN UNIVERSITY OF TECHNOLOGY   (Germany)

^c MAX PLANCK INSTITUTE OF MOLECULAR CELL BIOLOGY AND GENETICS   (Germany)

Author keywords

Blinking; Cross correlation analysis; DsRed; FCS; Fluorescence resonance energy transfer; FRET; GFP; In vivo; Single molecule; Two photon excitation

Indexed keywords

PHOTOPROTEIN;

CHEMISTRY; INSTRUMENTATION; METABOLISM; METHODOLOGY; MULTIPHOTON MICROSCOPY; REVIEW; SPECTROFLUOROMETRY; STATISTICS;

LUMINESCENT PROTEINS; MICROSCOPY, FLUORESCENCE, MULTIPHOTON; SPECTROMETRY, FLUORESCENCE; STATISTICS;

EID: 23944488300     PISSN: 07246145     EISSN: None     Source Type: Book Series    
DOI: 10.1007/b102212     Document Type: Review

References (108)

1. Magde D, Elson EL, Webb WW (1972) Phys Rev Lett 29:705
2. Eigen M, Rigler R (1994) Proc Natl Acad Sci USA 91:5740
3. Schwille P, Meyeralmes FJ, Rigler R (1997) Biophys J 72:1878
4. Schwille P (2001) Cell Biochem Biophys 34:383
5. Denk W, Strickler JH, Webb WW (1990) Science 248:73
6. Schwille P, Haupts U, Maiti S, Webb WW (1999) Biophys J 77:2251
7. Heinze KG, Koltermann A, Schwille P (2000) Proc Natl Acad Sci USA 97:10377
8. Haupts U, Maiti S, Schwille P, Webb WW (1998) Proc Natl Acad Sci USA 95:13573
9. Schwille P, Kummer S, Heikal AA, Moerner WE, Webb WW (2000) Proc Natl Acad Sci USA 97:151
10. Heikal AA, Hess ST, Baird GS, Tsien RY, Webb WW (2000) Proc Natl Acad Sci USA 97:11996
11. Malvezzi-Campeggi F, Jahnz M, Heinze KG, Dittrich P, Schwille P (2001) Biophys J 81:1776
12. Miyawaki A (2002) Cell Struct Function 27:343
13. Zhang J, Campbell RE, Ting AY, Tsien RY (2002) Nature Rev Mol Cell Biol 3:906
14. Chen Y, Muller JD, Ruan QQ, Gratton E (2002) Biophys J 82:133
15. Ruan QQ, Chen Y, Gratton E, Glaser M, Mantulin WW (2002) Biophys J 83:3177
16. Bacia K, Majoul IV, Schwille P (2002) Biophys J 83:1184
17. Kim SA, Heinze KG, Waxham MN, Schwille P (2002) Biophys J (Annual Meeting Abstracts) 82:44a
18. Schwille P (2000) Cross-correlation analysis in FCS. In: Rigler R, Elson E (eds) Fluorescence correlation spectroscopy - theory and applications. Springer, Berlin Heidelberg New York, p 360
19. Krichevsky O, Bonnet G (2002) Rep Prog Phys 65:251
20. Haustein E, Schwille P (2002) Fluorescence correlation spectroscopy. Biophysics Online Textbook
21. Bacia K, Schwille P (2003) Methods (Duluth) 29:74
22. Rigler R, Mets U, Widengren J, Kask P (1993) Eur Biophys J 22:169
23. Widengren J, Mets U, Rigler R (1995) J Phys Chem 99:13368
24. Schwille P, Korlach J, Webb WW (1999) Cytometry 36:176
25. Wachsmuth M, Waldeck W, Langowski J (2000) J Mol Biol 298:677
26. Gennerich A, Schild D (2000) Biophys J 79:3294
27. Schwille P, Meyeralmes FJ, Rigler R (1997) Biophys J 72:1878
28. Ambrose WP, Goodwin PM, Jett JH, Van Orden A, Werner JH, Keller RA (1999) Chem Rev 99:2929
29. Dittrich P, Malvezzi-Campeggi F, Jahnz M, Schwille P (2001) Biol Chem 382:491
30. Eggeling C, Fries JR, Brand L, Günther R, Seidel CAM (1998) Proc Natl Acad Sci USA 95:1556
31. Nazarenko I, Pires R, Lowe B, Obaidy M, Rashtchian A (2002) Nucleic Acids Res 30:2089
32. Harms GS, Cognet L, Lommerse PHM, Blab GA, Schmidt T (2001) Biophys J 80:2396
33. Labas YA, Gurskaya NG, Yanushevich YG, Fradkov AF, Lukyanov KA, Lukyanov SA, Matz MV (2002) PNAS 99:4256
34. Tsien RY (1998) Annu Rev Biochem 67:509
35. Palm GJ, Wlodawer A (GREEN FLUORESCENT PROTEIN 302 PG. 378-394. 1999 [Figures], [Plates], [Colour plates]
36. Nagai T, Ibata K, Park ES, Kubota M, Mikoshiba K, Atsushi M (2002) Nat Biotechnol 20:87
37. Griesbeck O, Baird GS, Campbell RE, Zacharias DA, Tsien RY (2001) J Biol Chem 276:29188
38. Matz MV, Fradkov AF, Labas YA, Savitsky AP, Zaraisky AG, Markelov ML, Lukyanov SA (1999) Nat Biotechnol 17:969
39. Baird GS, Zacharias DA, Tsien RY (2000) Proc Natl Acad Sci USA 97:11984
40. Sacchetti A, Subramaniam V, Jovin TM, Alberti S (2002) FEBS Lett 525:13
41. Yanushevich YG, Staroverov DB, Savitsky AP, Fradkov AF, Gurskaya NG, Bulina ME, Lukyanov KA, Lukyanov SA (2002) FEBS Lett 511:11
42. Campbell RE, Tour O, Palmer AE, Steinbach PA, Baird GS, Zacharias DA, Tsien RY (2002) Proc Natl Acad Sci USA 99:7877
43. Fradkov AF, Verkhusha VV, Staroverov DB, Bulina ME, Yanushevich YG, Martynov VI, Lukyanov S, Lukyanov KA (2002) Biochem J 368:17
44. Gross LA, Baird GS, Hoffman RC, Baldridge KK, Tsien RY (2000) Proc Natl Acad Sci USA 97:11990
45. Yarbrough D, Wachter RM, Kallio K, Matz MV, Remington SJ (2001) Proc Natl Acad Sci USA 98:462
46. Bevis BJ, Glick BS (2002) Nat Biotechnol 20:83
47. Terskikh A, Fradkov A, Ermakova G, Zaraisky A, Tan P, Kajava AV, Zhao X, Lukyanov S, Matz MV, Kim S, Weissman I, Siebert P (2000) Sci 290:1585
48. Erickson MG, Moon DL, Yue DT (2003) Biophys J 85:599
49. Gavin P, Devenish RJ, Prescott M (2002) Biochem Biophys Res Commun 298:707
50. Patterson GH, Lippincott-Schwartz J (2002) Science 297:1873
51. Ando R, Hama H, Yamamoto-Hino M, Mizuno H, Miyawaki A (2002) PNAS 99:12651
52. Zapata-Hommer O, Griesbeck O (2003) BMC Biotechnol 3:5
53. Karasawa S, Araki T, Yamamoto-Hino M, Miyawaki A (2003) J Biol Chem 278:34167
54. Griffin BA, Adams SR, Tsien RY (1998) Science 281:269
55. Adams SR, Campbell RE, Gross LA, Martin BR, Walkup GK, Yao Y, Llopis J, Tsien RY (2002) J Am Chem Soc 124:6063
56. Bae JH, Rubini M, Jung G, Wiegand G, Seifert MHJ, Azim MK, Kim JS, Zumbusch A, Holak TA, Moroder L, Huber R, Budisa N (2003) J Mol Biol 328:1071
57. Miyawaki A, Llopis J, Heim R, Mccaffery JM, Adams JA, Ikura M, Tsien RY (1997) Nature 388:882
58. Calleja V, Ameer-Beg SM, Vojnovic B, Woscholski R, Downward J, Larijani B (2003) Biochem J 372:33
59. Insall R (2003) Biochem J 372
60. Leaney JL, Benians A, Graves FM, Tinker A (2002) J Biol Chem 277:28803
61. Baird GS, Zacharias DA, Tsien RY (1999) Proc Natl Acad Sci USA 11241
62. Biondi RM, Baehler PJ, Reymond CD, Veron M (1998) Nucleic Acids Res 26:4946
63. Doi N, Yanagawa H (1999) FEBS Lett 453:305
64. Wyborski DL, Bauer JC, Vaillancourt P (2001) Biotechniques 31:618
65. Gossen M, Bujard H (1992) PNAS 89:5547
66. No D, Yao TP, Evans RM (1996) Proc Natl Acad Sci USA 93:3346
67. Piston DW, Patterson GH, Knobel SM (Methods in cell biology, vol 58: green fluorescent proteins 58 PG. 31-+. 1999 [Figures], [Plates], [Colour plates]
68. Tawa P, Tam J, Cassady R, Nicholson DW, Xanthoudakis S (2001) Cell Death Differentiation 8:30
69. Tramier M, Gautier I, Piolot T, Ravalet S, Kemnitz K, Coppey J, Durieux C, Mignotte V, Coppey-Moisan M (2002) Biophys J 83:3570
70. Weiss S (1999) Science 283:1676
71. Sako Y, Minoghchi S, Yanagida T (2000) Nature Cell Biol 2:168
72. Schutz GJ, Kada G, Pastushenko VP, Schindler H (2000) EMBO J 19:892
73. Dickson RM, Cubitt AB, Tsien RY, Moerner WE (1997) Nature 388:355
74. Garcia-Parajo MF, Segers-Nolten GMJ, Veerman JA, Greve J, van Hulst NF (2000) Proc Natl Acad Sci USA 97:7237
75. Llopis J, Mccaffery JM, Miyawaki A, Farquhar MG, Tsien RY (1998) Proc Natl Acad Sci USA 95:6803
76. Lodish H, Baltimore D, Berk A, Zipursky SL, Matsudaira P, Darnell J (1995) Molecular cell biology, 3rd edn. Scientific American Books, New York, p 640
77. Garcia-Parajo MF, Koopman M, van Dijk EMHP, Subramaniam V, van Hulst NF (2001) Proc Natl Acad Sci USA 98:14392
78. Wiedenmann J, Schenk A, Rocker C, Girod A, Spindler KD, Nienhaus GU (2002) PNAS 99:11646
79. Petersen J, Wilmann PG, Beddoe T, Oakley AJ, Devenish RJ, Prescott M, Rossjohn J (2003) J Biol Chem M307896200
80. Kask P, Palo K, Fay N, Brand L, Mets U, Ullmann D, Jungmann J, Pschorr J, Gall K (2000) Biophys J 78:1703
81. Chen Y, Muller JD, So PTC, Gratton E (1999) Biophys J 77:553
82. Palo K, Metz U, Jager S, Kask P, Gall K (2001) Biophys J 79:2858
83. Starchev K, Buffle J, Perez E (1999) J Colloid Interface Sci 213:479
84. Palmer AG, Thompson NL III (1987) Biophys J 52:257
85. Blab GA, Lommerse PHM, Cognet L, Harms GS, Schmidt T (2001) Chem Phys Lett 350:71
86. Denk W, Piston DW, Webb WW (1995) Two-photon molecular excitation in laser-scanning microscopy. In: Pawley JB (ed) Handbook of biological confocal microscopy. Plenum Press, New York, chap 28, p 445
87. Berland KM, So PTC, Gratton E (1995) Biophys J 68:694
88. Kohl T, Heinze KG, Kuhlemann R, Koltermann A, Schwille P (2002) PNAS 99:12161
89. Piston DW (1999) Trends Cell Biol 9:66
90. Cluzel P, Surette M, Leibler S (2000) Science 287:1652
91. Kohler RH, Schwille P, Webb WW, Hanson MR (2000) J Cell Sci 113:3921
92. Dittrich PS, Schwille P (2002) Anal Chem 74:4472
93. Schwille P, Oehlenschläger F, Walter NG (1996) Biochemistry 35:10182
94. Boukari H, Nossal R, Sackett DL (2003) Biochemistry 42:1292
95. Chen Y, Muller JD, Tetin SY, Tyner JD, Gratton E (2000) Biophys J 79:1074
96. Meseth U, Wohland T, Rigler R, Vogel H (1999) Biophys J 76:1619
97. Saito K, Ito E, Takakuwa Y, Tamura M, Kinjo M (2003) FEBS Lett 541:126
98. Verkman AS (2002) Trends Biochem Sci 27:27
99. Croce AC, Spano A, Locatelli D, Barni S, Sciola L, Bottiroli G (1999) Photochem Photobiol 69:364
100. Brock R, Hink MA, Jovin TM (1998) Biophys J 75:2547
101. Kettling U, Koltermann A, Schwille P, Eigen M (1998) Proc Natl Acad Sci USA 95:1416
102. Ha T, Enderle T, Ogletree DF, Chemla DS, Selvin PR, Weiss S (1996) Proc Natl Acad Sci USA 93:6264
103. Deniz AA, Laurence TA, Beligere GS, Dahan M, Martin AB, Chemla DS, Dawson PE, Schultz PG, Weiss S (2000) Proc Natl Acad Sci USA 97:5179
104. Selvin PR (2000) Nat Struct Biol 7:730
105. Oida T, Sako Y, Kusumi A (1993) Biophys J 64:676
106. Immink RGH, Gadella TWJ, Ferrario S, Busscher M, Angenent GC (2002) Proc Natl Acad Sci USA 99:2416
107. Patterson G, Day RN, Piston D (2001) J Cell Sci 114:837
108. Gurskaya NG, Fradkov AF, Terskikh A, Matz MV, Labas YA, Martynov VI, Yanushevich YG, Lukyanov KA, Lukyanov SA (2001) FEBS Lett 507:16