Complementary Roles for Rpn11 and Ubp6 in Deubiquitination and Proteolysis by the Proteasome

Journal of Biological Chemistry

Volumn 279, Issue 3, 2004, Pages 1729-1738

  Guterman, Adi ^a   Glickman, Michael H ^a  

^a TECHNION ISRAEL INSTITUTE OF TECHNOLOGY   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

ALDEHYDES; DEGRADATION; ENZYMES; SUBSTRATES;

PROTEASOMES;

PROTEINS;

ALDEHYDE; CHELATING AGENT; CYSTEINE; HOLOENZYME; METALLOPROTEINASE; POLYUBIQUITIN; PROTEASOME; PROTEIN RPN11; PROTEIN UBP6; UBIQUITIN; UNCLASSIFIED DRUG;

ARTICLE; ENZYME ACTIVITY; ENZYME PURIFICATION; ENZYME SUBSTRATE COMPLEX; HYDROLYSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN DEGRADATION; REACTION TIME;

CYSTEINE ENDOPEPTIDASES; ENDOPEPTIDASES; GREEN FLUORESCENT PROTEINS; LUMINESCENT PROTEINS; MULTIENZYME COMPLEXES; PROTEASOME ENDOPEPTIDASE COMPLEX; SACCHAROMYCES CEREVISIAE PROTEINS; UBIQUITIN;

EID: 0347087494     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M307050200     Document Type: Article

References (82)

1. Voges, D., Zwickl, P., and Baumeister, W. (1999) Annu. Rev. Biochem. 68, 1015-1068
2. Zwickl, P., Baumeister, W., and Steven, A. (2000) Curr. Opin. Struct. Biol. 10, 242-250
3. Glickman, M. H., and Maytal, V. (2002) in Curr. Top. Microbiol. Immunol. 268, 43-72
4. Glickman, M. H. (2000) Semin. Cell Dev. Biol. 11, 149-158
5. Pickart, C. M. (2001) Annu. Rev. Biochem. 70, 503-533
6. Weissman, A. M. (2001) Nat. Rev. Cell Mol. Biol. 2, 169-179
7. Glickman, M. H., and Ciechanover, A. (2002) Physiol. Rev. 82, 373-428
8. Wing, S. (2003) Int. J. Biochem. Cell Biol. 35, 590-605
9. Kim, J. H., Park, K. C., Chung, S. S., Bang, O., and Chung, C. H. (2003) J. Biochem. (Tokyo) 134, 9-18
10. Baek, K.-H. (2003) Exp. Mol. Med. 35, 1-7
11. Guterman, A., and Glickman, M. H. (2004) Curr. Protein Pept. Sci., in press
12. Glickman, M. H., Rubin, D. M., Coux, O., Wefes, I., Pfeifer, G., Cjeka, Z., Baumeister, W., Fried, V. A., and Finley, D. (1998) Cell 94, 615-623
13. Wilkinson, K. D. (2000) Semin. Cell Dev. Biol. 11, 141-148
14. Lee, J. I., Woo, S. K., Kim, K. I., Park, K. C., Baek, S. H., Yoo, Y. J., and Chung, C. H. (1998) Biol. Proc. Online 1, 92-99
15. Amerik, A. Y., and Hochstrasser, M. (2000) Biol. Chem. 9-10, 981-992
16. Maytal-Kivity, V., Reis, N., Hofmann, K., and Glickman, M. H. (2002) BMC Biochem. 3, 28
17. Yao, T., and Cohen, R. E. (2002) Nature 419, 403-407
18. Verma, R., Aravind, L., Oania, R., McDonald, W. H., Yates, J. R., III, Koonin, E. V., and Deshaies, R. J. (2002) Science 298, 611-615
19. Berndt, C., Bech-Otschir, D., Dubiel, W., and Seeger, M. (2002) Curr. Biol. 12, R815-R817
20. Tran, H. J., Allen, M. D., Lowe, J., and Bycroft, M. (2003) Biochemistry 42, 11460-11465
21. Linghu, B., Callis, J., and Goebl, M. G. (2002) Eukaryotic Cell 1, 491-494
22. Wee, S., Hetfeld, B., Dubiel, W., and Wolf, D. A. (2002) BMC Genet. 3, 15
23. Maytal-Kivity, V., Pick, E., Piran, R., and Glickman, M. H. (2003) Int. J. Biochem. Cell Biol. 35, 706-715
24. Cope, G. A., Suh, G. S., Aravind, L., Schwarz, S. E., Zipursky, S. L., Koonin, E. V., and Deshaies, R. J. (2002) Science 298, 608-611
25. Maytal-Kivity, V., Piran, R., Pick, E., Hofmann, K., and Glickman, M. H. (2002) EMBO Rep. 12, 1215-1221
26. Johnston, S. C., Riddle, S. M., Cohen, R. E., and Hill, C. P. (1999) EMBO J. 18, 3877-3887
27. Groisman, R., Polanowska, J., Kuraoka, I., Sawada, J., Saijo, M., Drapkin, R., Kisselev, A. F., Tanaka, K., and Nakatani, Y. (2003) Cell 113, 357-367
28. Makarova, K. S., Aravind, L., and Koonin, E. V. (2000) Trends Biochem. Sci. 25, 50-52
29. Balakirev, M. Y., Tcherniuk, S. O., Jaquinod, M., and Chroboczek, J. (2003) EMBO Rep. 4, 517-522
30. Evans, P. C., Smith, T. S., Lai, M.-J., Williams, M. G., Burke, D. F., Heyninck, K., Kreike, M. M., Beyaert, R., Blundell, T. L., and Kilshaw, P. J. (2003) J. Biol. Chem. 278, 23180-23186
31. Scheel, H., Tomiuk, S., and Hofmann, K. (2003) Hum. Mol. Genet. 12, 2845-2852
32. Wilkinson, K. D. (2003) Nature 424, 738-739
33. Gan-Erdene, T., Nagamalleswari, K., Yin, L., Wu, K., Pan, Z.-Q., and Wilkinson, K. D. (2003) J. Biol. Chem. 278, 28892-28900
34. Mendoza, H. M., Shen, L.-n., Botting, C., Lewis, A., Chen, J., Ink, B., and Hay, R. T. (2003) J. Biol. Chem. 278, 25637-25643
35. Eytan, E., Armon, T., Heller, H., Beck, S., and Hershko, A. (1993) J. Biol. Chem. 268, 4668-4674
36. Lam, Y. A., Xu, W., DeMartino, G. N., and Cohen, R. E. (1997) Nature 385, 737-740
37. Lam, Y. A., DeMartino, G. N., Pickart, C. M., and Cohen, R. E. (1997) J. Biol. Chem. 272, 28438-28446
38. Layfield, R., Franklin, K., Landon, M., Walker, G., Wang, P., Ramage, R., Brown, A., Love, S., Urquhart, K., Muir, T., Baker, R., and Mayer, R. J. (1999) Anal. Biochem. 274, 40-49
39. Hoelzl, H., Kapelari, B., Kellermann, J., Seemuller, E., Sumegi, M., Udvardy, A., Medalia, O., Sperling, J., Muller, S., Engel, A., and Baumeister, W. (2000) J. Cell Biol. 150, 119-130
40. Borodovsky, A., Kessler, B. M., Casagrande, R., Overkleeff, H. S., Wilkinson, K. D., and Ploegh, H. L. (2001) EMBO J. 20, 5187-5196
41. Legget, D. S., Hanna, J., Borodovsky, A., Crossas, B., Schmidt, M., Baker, R. T., Walz, T., Ploegh, H. L., and Finley, D. (2002) Mol. Cell 10, 495-507
42. Li, T., Naqvi, N. I., Yang, H., and Teo, T. S. (2000) Biochem. Biophys. Res. Commun. 272, 270-275
43. Papa, F. R., Amerik, A. Y., and Hochstrasser, M. (1999) Mol. Biol. Cell 10, 741-756
44. van Nocker, S., Sadis, S., Rubin, D. M., Glickman, M. H., Fu, H., Coux, O., Wefes, I., Finley, D., and Vierstra, R. D. (1996) Mol. Cell. Biol. 11, 6020-6028
45. Glickman, M. H., Rubin, D. M., Fried, V. A., and Finley, D. (1998) Mol. Cell. Biol. 18, 3149-3162
46. Glickman, M. H., and Coux, O. (2001) Current Protocols in Protein Science, Vol. 24, pp. 21.25.21-21.25.17, John Wiley & Sons, Inc., New York
47. Thrower, J. S., Hoffman, L., Rechsteiner, M., and Pickart, C. (2000) EMBO J. 19, 94-102
48. Breitschopf, K., Bengal, E., Ziv, T., Admon, A., and Ciechanover, A. (1998) EMBO J. 17, 5964-5973
49. Dantuma, N. P., Lindsten, K., Glas, R., Jellne, M., and Masucci, M. G. (2000) Nat. Biotechnol. 18, 538-543
50. Zhang, M., Pickart, C. M., and Coffino, P. (2003) EMBO J. 22, 1488-1496
51. Liu, C.-W., Corboy, M. J., DeMartino, G. N., and Thomas, P. J. (2003) Science 299, 408-411
52. Weber-Ban, E. U., Reid, B. G., Miranker, A. D., and Horwich, A. L. (1999) Nature 401, 90-93
53. Eytan, E., Ganoth, D., Armon, A., and Hershko, A. (1989) Proc. Natl. Acad. Sci. U. S. A. 86, 7751-7755
54. Johnson, E. S., Ma, P. C., Ota, I. M., and Varshavsky, A. (1995) J. Biol. Chem. 270, 17442-17456
55. Johnson, E. S., Bartel, B., Seufert, W., and Varshavsky, A. (1992) EMBO J. 11, 497-505
56. Gavin, A. C., Bosche, M., Krause, R., Grandi, P., Marzioch, M., Bauer, A., Schultz, J., Rick, J. M., Michon, A. M., Cruciat, C. M., Remor, M., Hofert, C., Schelder, M., Brajenovic, M., Ruffner, H., Merino, A., Klein, K., Hudak, M., Dickson, D., Rudi, T., Gnau, V., Bauch, A., Bastuck, S., Huhse, B., Leutwein, C., Heurtier, M. A., Copley, R. R., Edelmann, A., Querfurth, E., Rybin, V., Drewes, G., Raida, M., Bouwmeester, T., Bork, P., Seraphin, B., Kuster, B., Neubauer, G., and Superti-Furga, G. (2002) Nature 415, 141-147
57. Fu, H. Y., Reis, N., Lee, Y., Glickman, M. H., and Vierstra, R. (2001) EMBO J. 20, 7096-7107
58. Lundgren, J., Masson, P., Realini, C. A., and Young, P. (2003) Mol. Cell. Biol. 23, 5320-5330
59. Finley, D., Tanaka, K., Mann, C., Feldmann, H., Hochstrasser, M., Vierstra, R., Johnston, S., Hampton, R., Haber, J., Silver, P., Frontali, L., Thorsness, P., Varshavsky, A., Byers, B., Wolf, D., Jentsch, S., Sommer, T., Baumeister, W., Goldberg, A., Fried, V., Rubin, D., Glickman, M., and Toh-e, A. (1998) Trends Biochem. Sci. 271, 244-245
60. Rinaldi, T., Ricci, C., Porro, D., Bolotin-Fukuhara, M., and Frontali, L. (1998) Mol. Biol. Cell 9, 2917-2931
61. Rinaldi, T., Ricordy, R., Bolotin-Fukuhara, M., and Frontali, L. (2002) Gene (Amst.) 286, 43-51
62. Hershko, A., and Rose, I. A. (1987) Proc. Natl. Acad. Sci. U. S. A. 84, 1829-1833
63. Pickart, C. M., and Rose, I. A. (1986) J. Biol. Chem. 261, 10210-10217
64. Shaeffer, J. R., and Cohen, R. E. (1996) Biochemistry 35, 10886-10893
65. Hu, M., Li, P., Li, M., Yao, T., Wu, J.-W., Gu, W., Cohen, R. E., and Shi, Y. (2002) Cell 111, 1041-1054
66. Hadari, T., Warms, J. V. B., Rose, I. A., and Hershko, A. (1992) J. Biol. Chem. 267, 719-727
67. Hershko, A., Ciechanover, A., Heller, H., Haas, A. L., and Rose, I. A. (1980) Proc. Natl. Acad. Sci. U. S. A. 77, 1783-1786
68. Bajorek, M., Finley, D., and Glickman, M. H. (2003) Curr. Biol. 13, 1140-1144
69. Groll, M., Bajorek, M., Koehler, A., Moroder, L., Rubin, D., Huber, R., Glickman, M. H., and Finley, D. (2000) Nat. Struct. Biol. 7, 1062-1067
70. Chen, L., and Madura, K. (2002) Mol. Cell. Biol. 22, 4902-4913
71. Lam, Y. A., Lawson, T. G., Velayutham, M., Zweier, J. L., and Pickart, C. M. (2002) Nature 416, 763-767
72. Elsasser, S., Gali, R. R., Schwickart, M., Larsen, C. N., Leggett, D. S., Muller, B., Feng, M. T., Tubing, F., Dittmar, G. A., and Finley, D. (2002) Nat. Cell Biol. 4, 725-730
73. Saeki, Y., Sone, T., Toh-e, A., and Yokosawa, H. (2002) Biochem. Biophys. Res. Commun. 296, 813-819
74. Seeger, M., Hartmann-Petersen, R., Wilkinson, C. R. M., Wallace, M., Samejima, I., Taylor, M. S., and Gordon, C. (2003) J. Biol. Chem. 278, 16791-16796
75. Benaroudj, N., Zwickl, P., Seemuller, E., Baumeister, W., and Goldberg, A. L. (2003) Mol. Cell 11, 69-78
76. Navon, A., and Goldberg, A. L. (2001) Mol. Cell 8, 1339-1349
77. Di Fiore, P. P., Polo, S., and Hofmann, K. (2003) Nat. Rev. Mol. Cell. Biol. 4, 491-497
78. Hershko, A., and Heller, H. (1985) Biochem. Biophys. Res. Commun. 128, 1079-1086
79. Haas, A., Reback, P. M., Pratt, G., and Rechsteiner, M. (1990) J. Biol. Chem. 265, 21664-21669
80. Shaeffer, J. R., and Kania, M. (1995) Biochemistry 34, 4015-4021
81. Raasi, S., and Pickart, C. M. (2003) J. Biol. Chem. 278, 8951-8959
82. Hartmann-Petersen, R., Hendil, K. B., and Gordon, C. (2003) FEBS Lett. 535, 77-81