Identification of ubiquitin-like protein-binding subunits of the 26S proteasome

Biochemical and Biophysical Research Communications

Volumn 296, Issue 4, 2002, Pages 813-819

  Saeki, Yasushi ^a   Sone, Takayuki ^a   Toh e, Akio ^b   Yokosawa, Hideyoshi ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

Author keywords

Dsk2; Proteasome; Rad23; Ubiquitin; Ubiquitin like domain

Indexed keywords

ADAPTOR PROTEIN; PROTEASOME; PROTEIN DSK2; PROTEIN RAD23; PROTEIN SUBUNIT; UBIQUITIN; UNCLASSIFIED DRUG;

ARTICLE; BINDING COMPETITION; COMPLEX FORMATION; CONTROLLED STUDY; ENZYME ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION;

BINDING, COMPETITIVE; BLOTTING, WESTERN; CELL CYCLE PROTEINS; CROSS-LINKING REAGENTS; DNA-BINDING PROTEINS; FUNGAL PROTEINS; GLUTATHIONE TRANSFERASE; OPEN READING FRAMES; PEPTIDE HYDROLASES; PLASMIDS; PRECIPITIN TESTS; PROTEASOME ENDOPEPTIDASE COMPLEX; PROTEIN BINDING; PROTEINS; RECOMBINANT FUSION PROTEINS; RECOMBINANT PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; UBIQUITIN; UBIQUITINS;

EID: 0036382885     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-291X(02)02002-8     Document Type: Article

References (27)

1. A. Hershko, A. Ciechanover, The ubiquitin system, Annu. Rev. Biochem. 67 (1998) 425-479.
2. D. Voges, P. Zwickl, W. Baumeister, The 26S proteasome: a molecular machine designed for controlled proteolysis, Annu. Rev. Biochem. 68 (1999) 1015-1068.
3. M.H. Glickman, A. Ciechanover, The ubiquitin-proteasome proteolytic pathway: destruction for the sake of construction, Physiol. Rev. 82 (2002) 373-428.
4. M.H. Glickman, D.M. Rubin, O. Coux, I. Wefes, G. Pfeifer, Z. Cjeka, W. Baumeister, V.A. Fried, D. Finley, A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and eIF3, Cell 94 (1998) 615-623.
5. Y. Saeki, A. Toh-e, H. Yokosawa, Rapid isolation and characterization of the yeast proteasome regulatory complex, Biochem. Biophys. Res. Commun. 273 (2000) 509-515.
6. Q. Deveraux, V. Ustrell, C. Pickart, M. Rechsteiner, A 26S protease subunit that binds ubiquitin conjugates, J. Biol. Chem. 269 (1994) 7059-7061.
7. S. van Nocker, S. Sadis, D.M. Rubin, M. Glickman, H. Fu, O. Coux, I. Wefes, D. Finley, R.D. Vierstra, The multiubiquitin-chain-binding protein Mcb1 is a component of the 26S proteasome in Saccharomyces cerevisiae and plays a nonessential, substrate-specific role in protein turnover, Mol. Cell. Biol. 16 (1996) 6020-6028.
8. K. Kominami, N. Okura, M. Kawamura, G.N. DeMartino, C.A. Slaughter, N. Shimbara, C.H. Chung, M. Fujimuro, H. Yokosawa, Y. Shimizu, N. Tanahashi, K. Tanaka, A. Toh-e, Yeast counterparts of subunits S5a and p58 (S3) of the human 26S proteasome are encoded by two multicopy suppressors of nin1-1, Mol. Biol. Cell 8 (1997) 171-187.
9. C.R.M. Wilkinson, K. Ferrell, M. Penney, M. Wallace, W. Dubiel, C. Gordon, Analysis of a gene encoding Rpn10 of the fission yeast proteasome reveals that the polyubiquitin-binding site of this subunit is essential when Rpn12/Mts3 activity is compromised, J. Biol. Chem. 275 (2000) 15182-15192.
10. C. Shauber, L. Chen, P. Tongaonker, I. Vega, D. Lambertson, Q. Potts, K. Madura, Rad23 links DNA repair to the ubiquitin/proteasome pathway, Nature 391 (1998) 715-718.
11. D. Lambertson, L. Chen, K. Madura, Pleiotropic defects caused by loss of the proteasome-interacting factors Rad23 and Rpn10 of Saccharomyces cerevisiae, Genetics 153 (1999) 69-79.
12. M.F. Kleijnen, A.H. Shih, P. Zhou, S. Kumar, R.E. Soccio, N.L. Kedersha, G. Gill, P.M. Howley, The hPLIC proteins may provide a link between the ubiquitination machinery and the proteasome, Mol. Cell 6 (2000) 409-419.
13. B.L. Bertolaet, D.J. Clarke, M. Wolff, M.H. Watson, M. Henze, G. Divita, S.I. Reed, UBA domains of DNA damage-inducible proteins interact with ubiquitin, Nat. Struct. Biol. 8 (2001) 417-422.
14. C.R.M. Wilkinson, M. Seeger, R. Hartmann-Petersen, M. Stone, M. Wallance, C. Semple, C. Gordon, Proteins containing the UBA domain are able to bind to multi-ubiquitin chains, Nat. Cell Biol. 3 (2001) 939-943.
15. L. Chen, K. Madura, Rad23 promotes the targeting of proteolytic substrates to the proteasome, Mol. Cell. Biol. 22 (2002) 4902-4913.
16. M. Funakoshi, T. Sasaki, T. Nishimoto, H. Kobayashi, Budding yeast Dsk2p is a polyubiquitin-binding protein that can interact with the proteasome, Proc. Natl. Acad. Sci. USA 99 (2002) 745-750.
17. H. Rao, A. Sastry, Recognition of specific ubiquitin conjugates is important for the proteolytic functions of the ubiquitin-associated domain proteins Dsk2 and Rad23, J. Biol. Chem. 277 (2002) 11691-11695.
18. Y. Saeki, A. Saitoh, A. Toh-e, H. Yokosawa, Ubiquitin-like proteins and Rpn10 play cooperative roles in ubiquitin-dependent proteolysis, Biochem. Biophys. Res. Commun. 293 (2002) 986-992.
19. R. Verma, S. Chen, R. Feldman, D. Schieltz, J. Yates, J. Dohmen, R.J. Deshaies, Proteasomal proteomics: identification of nucleotide-sensitive proteasome-interacting proteins by mass spectrometric analysis of affinity-purified proteasomes, Mol. Biol. Cell 11 (2000) 3425-3439.
20. M. Fujimuro, H. Sawada, H. Yokosawa, Production and characterization of monoclonal antibodies specific to multi-ubiquitin chains of polyubiquitinated proteins, FEBS Lett. 349 (1994) 173-180.
21. J. Takeuchi, M. Fujimuro, H. Yokosawa, K. Tanaka, A. Toh-e, Rpn9 is required for efficient assembly of the yeast 26S proteasome, Mol. Cell. Biol. 19 (1999) 6575-6584.
22. S. Kumar, A.L. Talis, P.M. Howley, Identification of HHR23A as a substrate for E6-associated protein-mediated ubiquitination, J. Biol. Chem. 274 (1999) 18785-18792.
23. H. Hiyama, M. Yokoi, C. Masutani, K. Sugasawa, T. Maekawa, K. Tanaka, J.H.J. Hoeijmakers, F. Hanaoka, Interaction of hHR23 with S5a. The ubiquitin-like domain of hHR23 mediates interaction with S5a subunit of 26S proteasome, J. Biol. Chem. 274 (1999) 28019-28025.
24. H. Fu, N. Reis, Y. Lee, M.H. Glickman, R.D. Vierstra, Subunit interaction maps for the regulatory particle of the 26S proteasome and the COP9 signalosome, EMBO J. 20 (2001) 7096-7107.
25. B. Kapelari, D. Bech-Otschir, R. Hegerl, R. Schade, R. Dumdey, W. Dubiel, Electron microscopy and subunit-subunit interaction studies reveal a first architecture of COP9 signalosome, J. Mol. Biol. 300 (2000) 1169-1178.
26. Y.A. Lam, T.G. Lawson, M. Velayutham, J.L. Zweier, C.M. Pickart, A proteasomal ATPase subunit recognizes the polyubiquitin degradation signal, Nature 416 (2002) 763-767.
27. C. Gorbea, D. Taillandier, M. Rechsteiner, Mapping subunit contacts in the regulatory complex of the 26S proteasome. S2 and S5b form a tetramer with ATPase subunit S4 and S7, J. Biol. Chem. 275 (2000) 875-882.