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Volumn 358, Issue 1429, 2003, Pages 39-58

How big is the iceberg of which organellar genes in nuclear genomes are but the tip?

Author keywords

Eukaryotes; Genome evolution; Lateral gene transfer; Prokaryotes

Indexed keywords

EUKARYOTE; EVOLUTION; GENOME; PROKARYOTE;

EID: 0037471694     PISSN: 09628436     EISSN: None     Source Type: Journal    
DOI: 10.1098/rstb.2002.1185     Document Type: Conference Paper
Times cited : (163)

References (156)
  • 1
    • 0033380294 scopus 로고    scopus 로고
    • Analysis of the genetic diversity of Helicobacter pylori: The tale of two genomes
    • Alm, R. A. & Trust, T. J. 1999 Analysis of the genetic diversity of Helicobacter pylori: the tale of two genomes. J. Mol. Med. 77, 834-846.
    • (1999) J. Mol. Med. , vol.77 , pp. 834-846
    • Alm, R.A.1    Trust, T.J.2
  • 2
    • 0018788624 scopus 로고
    • Cytochrome c2 sequence variation among recognized species of purple nonsulfur photosynthetic bacteria
    • Ambler, R. P., Daniel, M., Hermoso, J., Meyer, T. E., Bartsch, R. G. & Kamen, M. D. 1979a Cytochrome c2 sequence variation among recognized species of purple nonsulfur photosynthetic bacteria. Nature 278, 659-660.
    • (1979) Nature , vol.278 , pp. 659-660
    • Ambler, R.P.1    Daniel, M.2    Hermoso, J.3    Meyer, T.E.4    Bartsch, R.G.5    Kamen, M.D.6
  • 3
    • 0018426434 scopus 로고
    • Anomalies in amino acid sequences of small cytochromes c and cytochromes c' from two species of purple photosynthetic bacteria
    • Ambler, R. P., Meyer, T. E. & Kamen, M. D. 1979b Anomalies in amino acid sequences of small cytochromes c and cytochromes c' from two species of purple photosynthetic bacteria. Nature 278, 661-662.
    • (1979) Nature , vol.278 , pp. 661-662
    • Ambler, R.P.1    Meyer, T.E.2    Kamen, M.D.3
  • 4
    • 0014006262 scopus 로고
    • Possible importance of transfer factors in bacterial evolution
    • Anderson, E. S. 1966 Possible importance of transfer factors in bacterial evolution. Nature 209, 637-638.
    • (1966) Nature , vol.209 , pp. 637-638
    • Anderson, E.S.1
  • 5
    • 0036550477 scopus 로고    scopus 로고
    • Evolutionary analysis of the small subunit of glutamate synthase: Gene order conservation, gene fusion, and prokaryote-to-eukaryote lateral gene transfers
    • Andersson, J. O. & Roger, A. J. 2002 Evolutionary analysis of the small subunit of glutamate synthase: gene order conservation, gene fusion, and prokaryote-to-eukaryote lateral gene transfers. Euk. Cell 1, 304-310.
    • (2002) Euk. Cell , vol.1 , pp. 304-310
    • Andersson, J.O.1    Roger, A.J.2
  • 6
    • 0035827247 scopus 로고    scopus 로고
    • Genomics: Are there bugs in our genome?
    • Andersson, J. O., Doolittle, W. F. & Nesbo, C. L. 2001 Genomics: are there bugs in our genome? Science 292, 1848-1850.
    • (2001) Science , vol.292 , pp. 1848-1850
    • Andersson, J.O.1    Doolittle, W.F.2    Nesbo, C.L.3
  • 7
    • 0003241658 scopus 로고    scopus 로고
    • Phylogenetic analyses of diplomonad genes reveal frequent lateral gene transfers affecting eukaryotes
    • In the press
    • Andersson, J. O., Homer, D. S., Dyal, P. L., Sjögren, Å. M., Davis, L., Embley, T. M. & Roger, A. J. 2002 Phylogenetic analyses of diplomonad genes reveal frequent lateral gene transfers affecting eukaryotes. Curr. Biol. (In the press.)
    • (2002) Curr. Biol.
    • Andersson, J.O.1    Homer, D.S.2    Dyal, P.L.3    Sjögren, Å.M.4    Davis, L.5    Embley, T.M.6    Roger, A.J.7
  • 8
    • 0023227343 scopus 로고
    • Sequences from a prokaryotic genome or the mouse dihydrofolate reductase gene can restore the import of a truncated precursor protein into yeast mitochondria
    • Baker, A. & Schatz, G. 1987 Sequences from a prokaryotic genome or the mouse dihydrofolate reductase gene can restore the import of a truncated precursor protein into yeast mitochondria. Proc. Natl Acad. Sci. USA 84, 3117-3121.
    • (1987) Proc. Natl Acad. Sci. USA , vol.84 , pp. 3117-3121
    • Baker, A.1    Schatz, G.2
  • 9
    • 0029819318 scopus 로고    scopus 로고
    • The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny
    • Baldauf, S. L., Palmer, J. D. & Doolittle, W, F. 1996 The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny. Proc. Natl Acad. Sci. USA 93, 7749-7754.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 7749-7754
    • Baldauf, S.L.1    Palmer, J.D.2    Doolittle, W.F.3
  • 13
    • 0034076858 scopus 로고    scopus 로고
    • Why mitochondrial genes are most often found in nuclei
    • Berg, O. G. & Kurland, C. G. 2000 Why mitochondrial genes are most often found in nuclei. Mol. Biol. Evol. 17, 951-961.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 951-961
    • Berg, O.G.1    Kurland, C.G.2
  • 14
    • 0033934642 scopus 로고    scopus 로고
    • Proteobacterial histidine-biosynthetic pathways are paraphyletic
    • Bond, J. P. & Francklyn, C. 2000 Proteobacterial histidine-biosynthetic pathways are paraphyletic. J. Mol. Evol. 50, 339-347.
    • (2000) J. Mol. Evol. , vol.50 , pp. 339-347
    • Bond, J.P.1    Francklyn, C.2
  • 15
    • 0033859551 scopus 로고    scopus 로고
    • The role of lateral gene transfer in the evolution of isoprenoid biosynthesis pathways
    • Boucher, Y. & Doolittle, W. F. 2000 The role of lateral gene transfer in the evolution of isoprenoid biosynthesis pathways. Mol. Microbiol. 37, 703-716.
    • (2000) Mol. Microbiol. , vol.37 , pp. 703-716
    • Boucher, Y.1    Doolittle, W.F.2
  • 16
    • 0034939491 scopus 로고    scopus 로고
    • Bacterial origin for the isoprenoid biosynthesis enzyme HMG-CoA reductase of the archaeal orders Thermoplasmatales and Archaeoglobales
    • Boucher, Y., Huber, H., L'Haridon, S., Stetter, K. O. & Doolittle, W. F. 2001 Bacterial origin for the isoprenoid biosynthesis enzyme HMG-CoA reductase of the archaeal orders Thermoplasmatales and Archaeoglobales. Mol. Biol. Evol. 18, 1378-1388.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1378-1388
    • Boucher, Y.1    Huber, H.2    L'Haridon, S.3    Stetter, K.O.4    Doolittle, W.F.5
  • 17
    • 0034565944 scopus 로고    scopus 로고
    • The evolutionary history of ribosomal protein RpS14
    • Brochier, C., Philippe, H. & Moreira, D. 2000 The evolutionary history of ribosomal protein RpS14. Trends Genet. 16, 529-533.
    • (2000) Trends Genet. , vol.16 , pp. 529-533
    • Brochier, C.1    Philippe, H.2    Moreira, D.3
  • 18
    • 0036137155 scopus 로고    scopus 로고
    • Eubacterial phylogeny based on translational apparatus proteins
    • Brochier, C., Bapteste, E., Moreira, D. & Philippe, H. 2002 Eubacterial phylogeny based on translational apparatus proteins. Trends Genet. 18, 1-5.
    • (2002) Trends Genet. , vol.18 , pp. 1-5
    • Brochier, C.1    Bapteste, E.2    Moreira, D.3    Philippe, H.4
  • 19
    • 0031470387 scopus 로고    scopus 로고
    • Archaea and the prokaryote to eukaryote transition
    • Brown, J. R. & Doolittle, W. F. 1997 Archaea and the prokaryote to eukaryote transition. Microbiol. Mol. Biol. Rev. 61, 456-502.
    • (1997) Microbiol. Mol. Biol. Rev. , vol.61 , pp. 456-502
    • Brown, J.R.1    Doolittle, W.F.2
  • 21
    • 0029780693 scopus 로고    scopus 로고
    • Unique chromosomal regions associated with virulence of an avian pathogenic Escherichia coli strain
    • Brown, P. K. & Curtiss III, R. 1996 Unique chromosomal regions associated with virulence of an avian pathogenic Escherichia coli strain. Proc. Natl Acad. Sci. USA 93, 11 149-11 154.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 11149-11154
    • Brown, P.K.1    Curtiss R. III2
  • 23
    • 0031694197 scopus 로고    scopus 로고
    • Escape of mitochondrial DNA to the nucleus in yme1 yeast is mediated by vacuolar-dependent turnover of abnormal compartments
    • Campell, C. L. & Thorseness, P. E. 1998 Escape of mitochondrial DNA to the nucleus in yme1 yeast is mediated by vacuolar-dependent turnover of abnormal compartments. J. Cell Sci. 111, 2455-2464.
    • (1998) J. Cell Sci. , vol.111 , pp. 2455-2464
    • Campell, C.L.1    Thorseness, P.E.2
  • 25
    • 0023665552 scopus 로고
    • Eukaryotes with no mitochondria
    • Cavalier-Smith, T. 1987 Eukaryotes with no mitochondria. Nature 326, 332-333.
    • (1987) Nature , vol.326 , pp. 332-333
    • Cavalier-Smith, T.1
  • 26
    • 0036210883 scopus 로고    scopus 로고
    • Inferring genome trees using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLAST scores
    • Clarke, G. D. P., Beiko, R. G., Ragan, M. A. & Charlebois, R. L. 2002 Inferring genome trees using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLAST scores. J. Bacteriol. 184, 2072-2080.
    • (2002) J. Bacteriol. , vol.184 , pp. 2072-2080
    • Clarke, G.D.P.1    Beiko, R.G.2    Ragan, M.A.3    Charlebois, R.L.4
  • 27
    • 0035900653 scopus 로고    scopus 로고
    • Reconstructing/deconstructing the earliest eukaryotes: How comparative genomics can help
    • Dacks, J. B. & Doolittle, W. F. 2001 Reconstructing/deconstructing the earliest eukaryotes: how comparative genomics can help. Cell 107, 419-425.
    • (2001) Cell , vol.107 , pp. 419-425
    • Dacks, J.B.1    Doolittle, W.F.2
  • 28
    • 0033752502 scopus 로고    scopus 로고
    • Lateral gene transfer and metabolic adaptation in the human parasite Trichomonas vaginalis
    • de Koning, A. P., Brinkman, F. S., Jones, S. J. & Keeling, P. J. 2000 Lateral gene transfer and metabolic adaptation in the human parasite Trichomonas vaginalis. Mol. Biol. Evol. 17, 1769-1773.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1769-1773
    • De Koning, A.P.1    Brinkman, F.S.2    Jones, S.J.3    Keeling, P.J.4
  • 29
    • 0034703744 scopus 로고    scopus 로고
    • Evolutionary implications of the frequent horizontal transfer of mismatch repair genes
    • Denamur, E. (and 11 others) 2000 Evolutionary implications of the frequent horizontal transfer of mismatch repair genes. Cell 103, 711-721.
    • (2000) Cell , vol.103 , pp. 711-721
    • Denamur, E.1
  • 30
    • 0035988323 scopus 로고    scopus 로고
    • The genome of Methanosarcina mazei: Evidence for lateral gene transfer between Bacteria and Archaea
    • Deppenemeier, U. (and 21 others) 2002 The genome of Methanosarcina mazei: evidence for lateral gene transfer between Bacteria and Archaea. J. Mol. Microbiol. Biotechnol. 4, 453-461.
    • (2002) J. Mol. Microbiol. Biotechnol. , vol.4 , pp. 453-461
    • Deppenemeier, U.1
  • 31
    • 0018834597 scopus 로고
    • Evolution and gene transfer in purple photosynthetic bacteria
    • Dickerson, R. E. 1980 Evolution and gene transfer in purple photosynthetic bacteria. Nature 283, 210-212.
    • (1980) Nature , vol.283 , pp. 210-212
    • Dickerson, R.E.1
  • 33
    • 0032404453 scopus 로고    scopus 로고
    • You are what you eat: A gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes
    • Doolittle, W. F. 1998 You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes. Trends Genet. 14, 307-311.
    • (1998) Trends Genet. , vol.14 , pp. 307-311
    • Doolittle, W.F.1
  • 34
    • 0033603539 scopus 로고    scopus 로고
    • Phylogenetic classification and the universal tree
    • Doolittle, W. F. 1999 Phylogenetic classification and the universal tree. Science 282, 2124-2129.
    • (1999) Science , vol.282 , pp. 2124-2129
    • Doolittle, W.F.1
  • 35
    • 0034756445 scopus 로고    scopus 로고
    • Whole genome comparison of Campylobacter jejuni human isolates using a low-cost microarray reveals extensive genetic diversity
    • Dorrell, N. (and 11 others) 2001 Whole genome comparison of Campylobacter jejuni human isolates using a low-cost microarray reveals extensive genetic diversity. Genome Res. 11, 1706-1715.
    • (2001) Genome Res. , vol.11 , pp. 1706-1715
    • Dorrell, N.1
  • 36
    • 0037022337 scopus 로고    scopus 로고
    • Comparative genomic analysis of Vibrio cholerae: Genes that correlate with cholera endemic and pandemic disease
    • Dziejman, M., Balon, E., Boyd, D., Fraser, C. M., Heidelberg, J. F. & Mekalanos, J. J. 2002 Comparative genomic analysis of Vibrio cholerae: genes that correlate with cholera endemic and pandemic disease. Proc. Natl Acad. Sci. USA 99, 1556-1561.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 1556-1561
    • Dziejman, M.1    Balon, E.2    Boyd, D.3    Fraser, C.M.4    Heidelberg, J.F.5    Mekalanos, J.J.6
  • 37
    • 0036468520 scopus 로고    scopus 로고
    • Comparative genomics of closely related salmonellae
    • Edwards, R. A., Olsen, G. J. & Maloy, S. R. 2002 Comparative genomics of closely related salmonellae. Trends Microbiol. 10, 94-99.
    • (2002) Trends Microbiol. , vol.10 , pp. 94-99
    • Edwards, R.A.1    Olsen, G.J.2    Maloy, S.R.3
  • 38
    • 0033669672 scopus 로고    scopus 로고
    • Horizontal gene transfer among microbial genomes: New insights from complete genome analysis
    • Eisen, J. A. 2000 Horizontal gene transfer among microbial genomes: new insights from complete genome analysis. Curr. Opin. Gen. Dev. 10, 606-611.
    • (2000) Curr. Opin. Gen. Dev. , vol.10 , pp. 606-611
    • Eisen, J.A.1
  • 39
    • 0032873608 scopus 로고    scopus 로고
    • Genomic subtraction identifies Salmonella typhimurium prophages, F-related plasmid sequences, and a novel fimbrial operon, stf, which are absent in Salmonella typhi
    • Emmerth, M., Goebel, W., Miller, S. I. & Hueck, C. J. 1999 Genomic subtraction identifies Salmonella typhimurium prophages, F-related plasmid sequences, and a novel fimbrial operon, stf, which are absent in Salmonella typhi. J. Bacteriol. 181, 5652-5661.
    • (1999) J. Bacteriol. , vol.181 , pp. 5652-5661
    • Emmerth, M.1    Goebel, W.2    Miller, S.I.3    Hueck, C.J.4
  • 40
    • 0034191993 scopus 로고    scopus 로고
    • Horizontal transfer of catalase-peroxidase genes between archaea and pathogenic bacteria
    • Faguy, D. M. & Doolittle, W. F. 2000 Horizontal transfer of catalase-peroxidase genes between archaea and pathogenic bacteria. Trends Genet. 16, 196-197.
    • (2000) Trends Genet. , vol.16 , pp. 196-197
    • Faguy, D.M.1    Doolittle, W.F.2
  • 41
    • 0035793056 scopus 로고    scopus 로고
    • Recombination within natural populations of pathogenic bacteria: Short-term empirical estimates and long-term phylogenetic consequences
    • Feil, E. J. (and 11 others) 2001 Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences. Proc. Natl Acad. Sci. USA 98, 182-187.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 182-187
    • Feil, E.J.1
  • 43
    • 0033710968 scopus 로고    scopus 로고
    • Early lateral transfer of genes encoding malic enzyme, acetyl-CoA synthetase and alcohol dehydrogenases from anaerobic prokaryotes to Entamoeba histolytica
    • Field, J., Rosenthal, B. & Samuelson, J. 2000 Early lateral transfer of genes encoding malic enzyme, acetyl-CoA synthetase and alcohol dehydrogenases from anaerobic prokaryotes to Entamoeba histolytica. Mol. Microbiol. 38, 446-455.
    • (2000) Mol. Microbiol. , vol.38 , pp. 446-455
    • Field, J.1    Rosenthal, B.2    Samuelson, J.3
  • 44
    • 0032949947 scopus 로고    scopus 로고
    • Glyceraldehyde-3-phosphate dehydrogenase gene diversity in eubacteria and eukaryotes: Evidence for intra- and inter-kingdom gene transfer
    • Figge, R. M., Schubert, M., Brinkmann, H. & Cerff, R. 1999 Glyceraldehyde-3-phosphate dehydrogenase gene diversity in eubacteria and eukaryotes: evidence for intra- and inter-kingdom gene transfer. Mol. Biol. Evol. 16, 429-440.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 429-440
    • Figge, R.M.1    Schubert, M.2    Brinkmann, H.3    Cerff, R.4
  • 45
    • 0035902534 scopus 로고    scopus 로고
    • Evolutionary genomics of Staphylococcus aureus: Insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemic
    • Fitzgerald, J. R., Sturdevant, D. E., Mackie, S. M., Gill, S. R. & Musser, J. M. 2001 Evolutionary genomics of Staphylococcus aureus: insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemic. Proc. Natl Acad. Sci. USA 98, 8821-8826.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 8821-8826
    • Fitzgerald, J.R.1    Sturdevant, D.E.2    Mackie, S.M.3    Gill, S.R.4    Musser, J.M.5
  • 46
    • 0033214077 scopus 로고    scopus 로고
    • Where is the root of the universal tree of life?
    • Forterre, P. & Philippe, H. 1999 Where is the root of the universal tree of life? BioEssays 21, 871-879.
    • (1999) BioEssays , vol.21 , pp. 871-879
    • Forterre, P.1    Philippe, H.2
  • 47
    • 0017347967 scopus 로고
    • Comparative cataloging of 16S ribosomal ribonucleic acid: Molecular approach to prokaryotic systematics
    • Fox, G. E., Peckman, K. J. & Woese, C. R. 1977 Comparative cataloging of 16S ribosomal ribonucleic acid: molecular approach to prokaryotic systematics. Int. J. Syst. Bacteriol. 27, 44-57.
    • (1977) Int. J. Syst. Bacteriol. , vol.27 , pp. 44-57
    • Fox, G.E.1    Peckman, K.J.2    Woese, C.R.3
  • 48
    • 0036225678 scopus 로고    scopus 로고
    • The genome of M. acetivorans reveals extensive metabolic and physiological diversity
    • Galagan, J. E. (and 54 others) 2002 The genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Res. 12, 532-542.
    • (2002) Genome Res. , vol.12 , pp. 532-542
    • Galagan, J.E.1
  • 49
    • 0033670249 scopus 로고    scopus 로고
    • Horizontal transfer in bacterial and archaeal complete genomes
    • Garcia-Vallve, S., Romeau, A. & Palau, J. 2000 Horizontal transfer in bacterial and archaeal complete genomes. Genome Res. 10, 1719-1725.
    • (2000) Genome Res. , vol.10 , pp. 1719-1725
    • Garcia-Vallve, S.1    Romeau, A.2    Palau, J.3
  • 50
    • 0033861269 scopus 로고    scopus 로고
    • Plasmid and chromosome partitioning: Surprises from phylogeny
    • Gerdes, K., Moller-Jensen, J. & Bugge Jensen, R. 2000 Plasmid and chromosome partitioning: surprises from phylogeny. Mol. Microbiol. 37, 455-466.
    • (2000) Mol. Microbiol. , vol.37 , pp. 455-466
    • Gerdes, K.1    Moller-Jensen, J.2    Bugge Jensen, R.3
  • 51
    • 0024722874 scopus 로고
    • Evolution of the vacuolar H+-ATPase: Implications for the origin of eukaryotes
    • Gogarten, J. P. (and 11 others) 1989 Evolution of the vacuolar H+-ATPase: implications for the origin of eukaryotes. Proc. Natl Acad. Sci. USA 86, 6661-6665.
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 6661-6665
    • Gogarten, J.P.1
  • 53
    • 0020047207 scopus 로고
    • Has the endosymbiont hypothesis been proven?
    • Gray, M. W. & Doolittle, W. F. 1982 Has the endosymbiont hypothesis been proven? Microbiol. Rev. 46, 1-42.
    • (1982) Microbiol. Rev. , vol.46 , pp. 1-42
    • Gray, M.W.1    Doolittle, W.F.2
  • 54
    • 0032956536 scopus 로고    scopus 로고
    • Discontinuous occurrence of the hsp70 (dnaK) gene among Archaea and sequence features of HSP70 suggest a novel outlook on phylogenies inferred from this protein
    • Gribaldo, S., Lumia, V., Creti, R., de Macario, E. C., Sanangelantoni, A. & Cammarano, P. 1999 Discontinuous occurrence of the hsp70 (dnaK) gene among Archaea and sequence features of HSP70 suggest a novel outlook on phylogenies inferred from this protein. J. Bacteriol. 18, 434-443.
    • (1999) J. Bacteriol. , vol.18 , pp. 434-443
    • Gribaldo, S.1    Lumia, V.2    Creti, R.3    De Macario, E.C.4    Sanangelantoni, A.5    Cammarano, P.6
  • 55
    • 0035082972 scopus 로고    scopus 로고
    • Mosaic genes and mosaic chromosomes: Intra- and interspecies genomic variation of Streptococcus pneumoniae
    • Hakenbeck, R., Balmelle, N., Weber, B., Gardes, C., Keck, W. & de Saizieu, A. 2001 Mosaic genes and mosaic chromosomes: intra- and interspecies genomic variation of Streptococcus pneumoniae. Infect. Immun. 69, 2477-2486.
    • (2001) Infect. Immun. , vol.69 , pp. 2477-2486
    • Hakenbeck, R.1    Balmelle, N.2    Weber, B.3    Gardes, C.4    Keck, W.5    De Saizieu, A.6
  • 56
    • 0033859839 scopus 로고    scopus 로고
    • Phylogeny of 33 ribosomal and six other proteins encoded in an ancient gene cluster that is conserved across prokaryotic genomes: Influence of excluding poorly alignable sites from analysis
    • Hansmann, S. & Martin, W. 2000 Phylogeny of 33 ribosomal and six other proteins encoded in an ancient gene cluster that is conserved across prokaryotic genomes: influence of excluding poorly alignable sites from analysis. Int. J. Syst. Evol. Microbiol. 50, 1655-1663.
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 1655-1663
    • Hansmann, S.1    Martin, W.2
  • 57
    • 0035961748 scopus 로고    scopus 로고
    • Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12
    • Hayashi, T. (and 21 others) 2001 Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res. 8, 11-22.
    • (2001) DNA Res. , vol.8 , pp. 11-22
    • Hayashi, T.1
  • 59
    • 0034978233 scopus 로고    scopus 로고
    • Pathogenicity islands: The tip of the iceberg
    • Hentschel, U. & Hacker, J. 2001 Pathogenicity islands: the tip of the iceberg. Microbes Infect. 3, 545-548.
    • (2001) Microbes Infect. , vol.3 , pp. 545-548
    • Hentschel, U.1    Hacker, J.2
  • 60
    • 0035010115 scopus 로고    scopus 로고
    • Gene fragments distinguishing an epidemic-associated strain from a virulent prototype strain of Listeria monocytogenes belong to a distinct functional subset of genes and partially cross-hybridize with other Listeria species
    • Herd, M. & Kocks, C. 2001 Gene fragments distinguishing an epidemic-associated strain from a virulent prototype strain of Listeria monocytogenes belong to a distinct functional subset of genes and partially cross-hybridize with other Listeria species. Infect. Immun. 69, 3972-3979.
    • (2001) Infect. Immun. , vol.69 , pp. 3972-3979
    • Herd, M.1    Kocks, C.2
  • 61
    • 0036176720 scopus 로고    scopus 로고
    • Detection of genes with atypical nucleotide sequence in microbial genomes
    • Hooper, S. D. & Berg, O. G. 2002 Detection of genes with atypical nucleotide sequence in microbial genomes. J. Mol. Evol. 54, 365-375.
    • (2002) J. Mol. Evol. , vol.54 , pp. 365-375
    • Hooper, S.D.1    Berg, O.G.2
  • 62
    • 0030814221 scopus 로고    scopus 로고
    • Divergence in nitrogenases of Azoarcus spp., Proteobacteria of the beta subclass
    • Hurek, T., Egener, T. & Reinhold-Hurek, B. 1997 Divergence in nitrogenases of Azoarcus spp., Proteobacteria of the beta subclass. J. Bacteriol. 179, 4172-4178.
    • (1997) J. Bacteriol. , vol.179 , pp. 4172-4178
    • Hurek, T.1    Egener, T.2    Reinhold-Hurek, B.3
  • 63
    • 0035045707 scopus 로고    scopus 로고
    • Horizontal transfer of the photosynthetic gene cluster and operon rearrangement in purple bacteria
    • Igarashi, N., Harada, J., Nagashima, S., Matsuura, K., Shimada, K. & Nagashima, K. V. P. 2001 Horizontal transfer of the photosynthetic gene cluster and operon rearrangement in purple bacteria. J. Mol. Evol. 52, 333-341.
    • (2001) J. Mol. Evol. , vol.52 , pp. 333-341
    • Igarashi, N.1    Harada, J.2    Nagashima, S.3    Matsuura, K.4    Shimada, K.5    Nagashima, K.V.P.6
  • 65
    • 0024358140 scopus 로고
    • Evolutionary relationships of archaebacteria, eubacteria and eukaryotes inferred from phylogenetic trees of duplicated genes
    • Iwabe, N., Kuma, K. I., Hasegawa, M., Osawa, S. & Miyata, T. 1989 Evolutionary relationships of archaebacteria, eubacteria and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc. Natl Acad. Sci. USA 86, 9355-9359.
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 9355-9359
    • Iwabe, N.1    Kuma, K.I.2    Hasegawa, M.3    Osawa, S.4    Miyata, T.5
  • 66
    • 0033616714 scopus 로고    scopus 로고
    • Horizontal gene transfer among genomes: The complexity hypothesis
    • Jain, R. C., Rivera, M. C. & Lake, J. A. 1999 Horizontal gene transfer among genomes: the complexity hypothesis. Proc. Natl Acad. Sci. USA 96, 3801-3806.
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 3801-3806
    • Jain, R.C.1    Rivera, M.C.2    Lake, J.A.3
  • 67
    • 0016837549 scopus 로고
    • Paracoccus denitrificans and the evolutionary origin of the mitochondrion
    • John, P. & Whatley, F. R. 1975 Paracoccus denitrificans and the evolutionary origin of the mitochondrion. Nature 254, 495-498.
    • (1975) Nature , vol.254 , pp. 495-498
    • John, P.1    Whatley, F.R.2
  • 69
    • 0029911402 scopus 로고    scopus 로고
    • Transkingdom transfer of the phosphoglucose isomerase gene
    • Katz, L. A. 1996 Transkingdom transfer of the phosphoglucose isomerase gene. J. Mol Evol. 43, 453-459.
    • (1996) J. Mol Evol. , vol.43 , pp. 453-459
    • Katz, L.A.1
  • 71
    • 0034767491 scopus 로고    scopus 로고
    • Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence
    • Kennedy, S. P., Ng, W. V., Salzberg, S. L., Hood, L. & Das-Sarma, S. 2001 Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence. Genome Res. 11, 1641-1650.
    • (2001) Genome Res. , vol.11 , pp. 1641-1650
    • Kennedy, S.P.1    Ng, W.V.2    Salzberg, S.L.3    Hood, L.4    Das-Sarma, S.5
  • 72
    • 0034780910 scopus 로고    scopus 로고
    • Horizontal gene transfer in prokaryotes: Quantification and classification
    • Koonin, E. V., Makarova, K. S. & Aravind, L. 2001 Horizontal gene transfer in prokaryotes: quantification and classification. A. Rev. Microbiol. 55, 709-742.
    • (2001) A. Rev. Microbiol. , vol.55 , pp. 709-742
    • Koonin, E.V.1    Makarova, K.S.2    Aravind, L.3
  • 74
    • 0035099964 scopus 로고    scopus 로고
    • Codon biases and base composition are poor indicators of horizontally transferred genes
    • Koski, L. B., Morton, R. A. & Golding, G. B. 2001 Codon biases and base composition are poor indicators of horizontally transferred genes. Mol. Biol. Evol. 18, 404-412.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 404-412
    • Koski, L.B.1    Morton, R.A.2    Golding, G.B.3
  • 75
    • 0034252515 scopus 로고    scopus 로고
    • Something for everyone: Horizontal gene transfer in evolution
    • Kurland, C. G. 2000 Something for everyone: horizontal gene transfer in evolution. EMBO Reports 1, 92-95.
    • (2000) EMBO Reports , vol.1 , pp. 92-95
    • Kurland, C.G.1
  • 76
    • 0035925904 scopus 로고    scopus 로고
    • Whole genome sequencing of meticillin-resistant Staphylococcus aureus
    • Kuroda, M. (and 36 others) 2001 Whole genome sequencing of meticillin-resistant Staphylococcus aureus. Lancet 357, 12 225-12 240.
    • (2001) Lancet , vol.357 , pp. 12225-12240
    • Kuroda, M.1
  • 77
    • 0342768762 scopus 로고    scopus 로고
    • Archaeal and bacterial thermophiles: Horizontal gene exchange or common ancestry?
    • Kyrpides, N. C. & Olsen, G. J. 1999 Archaeal and bacterial thermophiles: horizontal gene exchange or common ancestry? Trends Genet. 15, 298-299.
    • (1999) Trends Genet. , vol.15 , pp. 298-299
    • Kyrpides, N.C.1    Olsen, G.J.2
  • 78
    • 0030031267 scopus 로고    scopus 로고
    • Gene transfer is a major factor in bacterial evolution
    • Lan, R. & Reeves, P. R. 1996 Gene transfer is a major factor in bacterial evolution. Mol. Biol. Evol. 13, 47-55.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 47-55
    • Lan, R.1    Reeves, P.R.2
  • 79
    • 0034283229 scopus 로고    scopus 로고
    • Intraspecies variation in bacterial genomes: The need for a species genome concept
    • Lan, R. & Reeves, P. R. 2000 Intraspecies variation in bacterial genomes: the need for a species genome concept. Trends Microbiol. 8, 396-401.
    • (2000) Trends Microbiol. , vol.8 , pp. 396-401
    • Lan, R.1    Reeves, P.R.2
  • 80
    • 0034700150 scopus 로고    scopus 로고
    • Isoprenoid biosynthesis: The evolution of two ancient and distinct pathways across genomes
    • Lange, B. M., Rujan, T., Martin, W. & Croteau, R. 2000 Isoprenoid biosynthesis: the evolution of two ancient and distinct pathways across genomes. Proc. Natl Acad. Sci. USA 97, 13 172-13 177.
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 13172-13177
    • Lange, B.M.1    Rujan, T.2    Martin, W.3    Croteau, R.4
  • 81
    • 0029847554 scopus 로고    scopus 로고
    • Selfish operons: Horizontal transfer may drive the evolution of gene clusters
    • Lawrence, J. G. & Roth, J. R. 1996 Selfish operons: horizontal transfer may drive the evolution of gene clusters. Genetics 143, 1843-1860.
    • (1996) Genetics , vol.143 , pp. 1843-1860
    • Lawrence, J.G.1    Roth, J.R.2
  • 82
    • 0030994798 scopus 로고    scopus 로고
    • Amelioration of bacterial genomes: Rates of change and exchange
    • Lawrence, J. & Ochman, H. 1997 Amelioration of bacterial genomes: rates of change and exchange. J. Mol. Evol. 44, 383-397.
    • (1997) J. Mol. Evol. , vol.44 , pp. 383-397
    • Lawrence, J.1    Ochman, H.2
  • 83
    • 0033533618 scopus 로고    scopus 로고
    • Thermotoga heats up lateral gene transfer
    • Logsdon, J. M. & Faguy, D. M. 1999 Thermotoga heats up lateral gene transfer. Curr. Biol. 9, R747-R751.
    • (1999) Curr. Biol. , vol.9
    • Logsdon, J.M.1    Faguy, D.M.2
  • 84
    • 0004553333 scopus 로고    scopus 로고
    • The Giardia genome project
    • McArthur, A. G. (and 14 others) 2000 The Giardia genome project. FEMS Microbiol. Lett. 189, 271-273.
    • (2000) FEMS Microbiol. Lett. , vol.189 , pp. 271-273
    • McArthur, A.G.1
  • 85
    • 0035950182 scopus 로고    scopus 로고
    • Complete genome sequence of Salmonella enterica seovar Thyphimurium LT2
    • McClelland, M. (and 25 others) 2001 Complete genome sequence of Salmonella enterica seovar Thyphimurium LT2. Science 413, 852-856.
    • (2001) Science , vol.413 , pp. 852-856
    • McClelland, M.1
  • 86
    • 0035225012 scopus 로고    scopus 로고
    • Two C or not two C: Recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins
    • Research 0033.1-0033.14
    • Makarova, K. S., Ponomarev, V. A. & Koonin, E. V. 2001 Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins. Genome Biol. 2, Research 0033.1-0033.14.
    • (2001) Genome Biol. , vol.2
    • Makarova, K.S.1    Ponomarev, V.A.2    Koonin, E.V.3
  • 89
    • 0030035039 scopus 로고    scopus 로고
    • Archaeal-eubacterial mergers in the origin of Eukarya: Phylogenetic classification of life
    • Margulis, L. 1996 Archaeal-eubacterial mergers in the origin of Eukarya: phylogenetic classification of life. Proc. Natl Acad. Sci. USA 93, 1071-1076.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 1071-1076
    • Margulis, L.1
  • 90
    • 0033082247 scopus 로고    scopus 로고
    • Mosaic bacterial chromosmes: A challenge en route to a tree of genomes
    • Martin, W. 1999 Mosaic bacterial chromosmes: a challenge en route to a tree of genomes. BioEssays 21, 99-104.
    • (1999) BioEssays , vol.21 , pp. 99-104
    • Martin, W.1
  • 91
    • 0035197418 scopus 로고    scopus 로고
    • An overview of endosymbiotic models for the origins of eukaryotes, their ATP-producing organelles (mitochondria and hydrogenosomes), and their heterotrophic lifestyle
    • Martin, W., Hoffmeister, M., Rotte, C. & Henze, K. 2001 An overview of endosymbiotic models for the origins of eukaryotes, their ATP-producing organelles (mitochondria and hydrogenosomes), and their heterotrophic lifestyle. Biol. Chem. 382, 1521-1539.
    • (2001) Biol. Chem. , vol.382 , pp. 1521-1539
    • Martin, W.1    Hoffmeister, M.2    Rotte, C.3    Henze, K.4
  • 94
    • 0026332291 scopus 로고
    • Evidence for horizontal gene transfer in Escherichia coli speciation
    • Medigue, C., Rouxel, T., Vigier, P., Hénaut, A. & Danchin, A. 1991 Evidence for horizontal gene transfer in Escherichia coli speciation. J. Mol. Biol. 222, 851-856.
    • (1991) J. Mol. Biol. , vol.222 , pp. 851-856
    • Medigue, C.1    Rouxel, T.2    Vigier, P.3    Hénaut, A.4    Danchin, A.5
  • 95
    • 0022447589 scopus 로고
    • Evidence against use of bacterial amino acid sequence data for construction of all-inclusive phylogenetic trees
    • Meyer, T. E., Cusanovich, M. A. & Kamen, M. D. 1986 Evidence against use of bacterial amino acid sequence data for construction of all-inclusive phylogenetic trees. Proc. Natl Acad. Sci. USA 83, 217-220.
    • (1986) Proc. Natl Acad. Sci. USA , vol.83 , pp. 217-220
    • Meyer, T.E.1    Cusanovich, M.A.2    Kamen, M.D.3
  • 96
    • 0033609333 scopus 로고    scopus 로고
    • Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima
    • Nelson, K. E. (and 28 others) 1999 Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima. Nature 399, 323-329.
    • (1999) Nature , vol.399 , pp. 323-329
    • Nelson, K.E.1
  • 97
    • 0035106010 scopus 로고    scopus 로고
    • Phylogenetic analyses of two 'archaeal' genes in Thermotoga maritima reveal multiple transfers between Archaea and Bacteria
    • Nesbø, C. L., L'Haridon, S., Stetter, K. O. & Doolittle, W. F. 2001a Phylogenetic analyses of two 'archaeal' genes in Thermotoga maritima reveal multiple transfers between Archaea and Bacteria. Mol. Biol. Evol. 18, 362-375.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 362-375
    • Nesbø, C.L.1    L'Haridon, S.2    Stetter, K.O.3    Doolittle, W.F.4
  • 98
    • 0034831587 scopus 로고    scopus 로고
    • Defining the core of nontransferable prokaryotic genes: The euryarchaeal core
    • Nesbø, C., Boucher, Y. & Doolittle, W. F. 2001b Defining the core of nontransferable prokaryotic genes: the euryarchaeal core. J. Mol. Evol. 53, 340-350.
    • (2001) J. Mol. Evol. , vol.53 , pp. 340-350
    • Nesbø, C.1    Boucher, Y.2    Doolittle, W.F.3
  • 99
    • 0036335361 scopus 로고    scopus 로고
    • Suppressive subtractive hybridization detects extensive genomic diversity in Thermotoga maritima
    • Nesbø, C. L., Nelson, K. E. & Doolittle, W. F. 2002 Suppressive subtractive hybridization detects extensive genomic diversity in Thermotoga maritima. J. Bacteriol. 184, 4475-4488.
    • (2002) J. Bacteriol. , vol.184 , pp. 4475-4488
    • Nesbø, C.L.1    Nelson, K.E.2    Doolittle, W.F.3
  • 100
    • 0033404080 scopus 로고    scopus 로고
    • A prokaryotic gene cluster involved in synthesis of lysine through the amino adipate pathway: A key to the evolution of amino acid biosynthesis
    • Nishida, H., Nishiyama, M., Kobashi, N., Kosuge, T., Hoshimo, T. & Yamane, H. 1999 A prokaryotic gene cluster involved in synthesis of lysine through the amino adipate pathway: a key to the evolution of amino acid biosynthesis. Genome Res. 9, 1175-1183.
    • (1999) Genome Res. , vol.9 , pp. 1175-1183
    • Nishida, H.1    Nishiyama, M.2    Kobashi, N.3    Kosuge, T.4    Hoshimo, T.5    Yamane, H.6
  • 101
    • 0036549786 scopus 로고    scopus 로고
    • Evidence for lateral transfer of genes encoding ferredoxins, nitroreductases, NADH oxidase, and alcohol dehydrogenase 3 from anaerobic, prokaryotes to Giardia lamblia and Entamoeba histolytica
    • Nixon, J. E. J., Wang, A., Morrison, H. G., McArthur, A. G., Sogin, M. L., Loftus, B. J. & Samuelson, J. 2002 Evidence for lateral transfer of genes encoding ferredoxins, nitroreductases, NADH oxidase, and alcohol dehydrogenase 3 from anaerobic prokaryotes to Giardia lamblia and Entamoeba histolytica. Euk. Cell 1, 181-190.
    • (2002) Euk. Cell , vol.1 , pp. 181-190
    • Nixon, J.E.J.1    Wang, A.2    Morrison, H.G.3    McArthur, A.G.4    Sogin, M.L.5    Loftus, B.J.6    Samuelson, J.7
  • 102
    • 0034671796 scopus 로고    scopus 로고
    • Evolutionary dynamics of full genome content in Escherichia coli
    • Ochman, H. & Jones, I. B. 2000 Evolutionary dynamics of full genome content in Escherichia coli. EMBO J. 19, 6637-6643.
    • (2000) EMBO J. , vol.19 , pp. 6637-6643
    • Ochman, H.1    Jones, I.B.2
  • 103
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman, H., Lawrence, J. G. & Groisman, E. A. 2000 Lateral gene transfer and the nature of bacterial innovation. Nature 405, 299-304.
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 104
    • 0034542621 scopus 로고    scopus 로고
    • Horizontal transfer of archaeal genes into the Deinococcaceae: Detection by molecular and computer-based approaches
    • Olendzenski, L., Liu, L., Zhaxybayeva, O., Murphey, R., Shin, D. G. & Gogarten, J. P. 2000 Horizontal transfer of archaeal genes into the Deinococcaceae: detection by molecular and computer-based approaches. J. Mol. Evol. 51, 587-599.
    • (2000) J. Mol. Evol. , vol.51 , pp. 587-599
    • Olendzenski, L.1    Liu, L.2    Zhaxybayeva, O.3    Murphey, R.4    Shin, D.G.5    Gogarten, J.P.6
  • 105
    • 0028055018 scopus 로고
    • The winds of (evolutionary) change: Breathing new life into microbiology
    • Olsen, G. J., Woese, C. R. & Overbeek, R. 1994 The winds of (evolutionary) change: breathing new life into microbiology. J. Bacteriol. 176, 1-6.
    • (1994) J. Bacteriol. , vol.176 , pp. 1-6
    • Olsen, G.J.1    Woese, C.R.2    Overbeek, R.3
  • 106
    • 0030982247 scopus 로고    scopus 로고
    • A molecular view of microbial diversity and the biosphere
    • Pace, N. R. 1997 A molecular view of microbial diversity and the biosphere. Science 276, 734-740.
    • (1997) Science , vol.276 , pp. 734-740
    • Pace, N.R.1
  • 107
    • 0029608860 scopus 로고
    • Rubisco rules fall; gene transfer triumphs
    • Palmer, J. D. 1995 Rubisco rules fall; gene transfer triumphs. BioEssays 17, 1005-1008.
    • (1995) BioEssays , vol.17 , pp. 1005-1008
    • Palmer, J.D.1
  • 108
    • 0035344698 scopus 로고    scopus 로고
    • Case of localized recombination in 23S rRNA genes from divergent Bradyrhizobium lineages associated with neotropical legumes
    • Parker, M. A. 2001 Case of localized recombination in 23S rRNA genes from divergent Bradyrhizobium lineages associated with neotropical legumes. Appl. Environ. Microbiol. 67, 2076-2082.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 2076-2082
    • Parker, M.A.1
  • 109
    • 0035945586 scopus 로고    scopus 로고
    • Genome sequence of enterohemorrhagic Escherichia coli O157:H7
    • Perna, N. T. (and 29 others) 2001 Genome sequence of enterohemorrhagic Escherichia coli O157:H7. Nature 409, 529-533.
    • (2001) Nature , vol.409 , pp. 529-533
    • Perna, N.T.1
  • 110
  • 112
    • 0034800187 scopus 로고    scopus 로고
    • Diplonemid glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and prokaryote-toeukaryote lateral gene transfer
    • Qian, Q. & Keeling, P. K. 2001 Diplonemid glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and prokaryote-toeukaryote lateral gene transfer. Protist 152, 193-201.
    • (2001) Protist , vol.152 , pp. 193-201
    • Qian, Q.1    Keeling, P.K.2
  • 113
    • 0035546223 scopus 로고    scopus 로고
    • Detection of lateral gene transfer among microbial genomes
    • Ragan, M. A. 2001a Detection of lateral gene transfer among microbial genomes. Curr. Opin. Gen. Dev. 11, 620-626.
    • (2001) Curr. Opin. Gen. Dev. , vol.11 , pp. 620-626
    • Ragan, M.A.1
  • 114
    • 0035943134 scopus 로고    scopus 로고
    • On surrogate methods for detecting lateral gene transfer
    • Ragan, M. A. 2001b On surrogate methods for detecting lateral gene transfer. FEMS Microbiol. Lett. 201, 187-191.
    • (2001) FEMS Microbiol. Lett. , vol.201 , pp. 187-191
    • Ragan, M.A.1
  • 115
    • 0034654345 scopus 로고    scopus 로고
    • Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39
    • Read, T. D. (and 24 others) 2000 Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39. Nucleic Acids Res. 28, 1397-1406.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 1397-1406
    • Read, T.D.1
  • 116
    • 0016137855 scopus 로고
    • Viruses and evolution
    • Reanney, D. C. 1974 Viruses and evolution. Int. Rev. Cytol. 37, 212-252.
    • (1974) Int. Rev. Cytol. , vol.37 , pp. 212-252
    • Reanney, D.C.1
  • 117
    • 0032702602 scopus 로고    scopus 로고
    • Reconstructing early events in eukaryotic evolution
    • Roger, A. J. 1999 Reconstructing early events in eukaryotic evolution. Am. Nat. 154, S146-S163.
    • (1999) Am. Nat. , vol.154
    • Roger, A.J.1
  • 118
    • 0033039592 scopus 로고    scopus 로고
    • An evaluation of elongation factor 1 alpha as a phylogenetic marker for eukaryotes
    • Roger, A. J., Sandblom, O., Doolittle, W. F. & Philippe, H. 1999 An evaluation of elongation factor 1 alpha as a phylogenetic marker for eukaryotes. Mol. Biol. Evol. 16, 218-233.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 218-233
    • Roger, A.J.1    Sandblom, O.2    Doolittle, W.F.3    Philippe, H.4
  • 119
    • 0014070709 scopus 로고
    • On the origin of mitosing cells
    • Sagan, L. 1967 On the origin of mitosing cells. J. Theor. Biol. 14, 225-274.
    • (1967) J. Theor. Biol. , vol.14 , pp. 225-274
    • Sagan, L.1
  • 121
    • 0034697992 scopus 로고    scopus 로고
    • Early evolution of cytochrome bc complexes
    • Schutz, M. (and 11 others) 2000 Early evolution of cytochrome bc complexes. J. Mol. Biol. 300, 663-675.
    • (2000) J. Mol. Biol. , vol.300 , pp. 663-675
    • Schutz, M.1
  • 122
    • 0018277518 scopus 로고
    • Origins of prokaryotes, mitochondria and chloroplasts
    • Schwartz, R. M. & Dayhoff, M. O. 1978 Origins of prokaryotes, mitochondria and chloroplasts. Science 199, 395-403.
    • (1978) Science , vol.199 , pp. 395-403
    • Schwartz, R.M.1    Dayhoff, M.O.2
  • 123
    • 0035283304 scopus 로고    scopus 로고
    • Reducing the genome size of organelles favours transfer to the nucleus
    • Selosse, M.-A., Albert, B. & Godelle, B. 2001 Reducing the genome size of organelles favours transfer to the nucleus. Trends Ecol. Evol. 16, 135-142.
    • (2001) Trends Ecol. Evol. , vol.16 , pp. 135-142
    • Selosse, M.-A.1    Albert, B.2    Godelle, B.3
  • 124
    • 0032854258 scopus 로고    scopus 로고
    • Mechanisms of mitochondrial DNA escape to the nucleus in the yeast Saccharomyces cerevisiae
    • Shafer, K. S., Henekamp, T., White, K. H. & Thorsness, P. E. 1999 Mechanisms of mitochondrial DNA escape to the nucleus in the yeast Saccharomyces cerevisiae. Curr. Genet. 36, 183-194.
    • (1999) Curr. Genet. , vol.36 , pp. 183-194
    • Shafer, K.S.1    Henekamp, T.2    White, K.H.3    Thorsness, P.E.4
  • 126
    • 0026490002 scopus 로고
    • Evolution by acquisition: The case for horizontal gene transfers
    • Smith, M. W., Feng, D. F. & Doolitte, R. F. 1992 Evolution by acquisition: the case for horizontal gene transfers. Trends Biochem. Sci. 17, 489-493.
    • (1992) Trends Biochem. Sci. , vol.17 , pp. 489-493
    • Smith, M.W.1    Feng, D.F.2    Doolitte, R.F.3
  • 127
    • 0037007095 scopus 로고    scopus 로고
    • Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks
    • Smoot, J. C. (and 17 others) 2002 Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks. Proc. Natl Acad. Sci. USA 99, 4668-4673.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 4668-4673
    • Smoot, J.C.1
  • 128
    • 0015121887 scopus 로고
    • A tentative unifying view of bacteria
    • Sonea, S. 1971 A tentative unifying view of bacteria. Rev. Can. Biol. 30, 3239-3244.
    • (1971) Rev. Can. Biol. , vol.30 , pp. 3239-3244
    • Sonea, S.1
  • 130
    • 0035376911 scopus 로고    scopus 로고
    • Evolution of the genomic systems of prokaryotes and its momentous consequences
    • Sonea, S. & Mathieu, L. G. 2001 Evolution of the genomic systems of prokaryotes and its momentous consequences. Int. Microbiol. 4, 67-71.
    • (2001) Int. Microbiol. , vol.4 , pp. 67-71
    • Sonea, S.1    Mathieu, L.G.2
  • 131
    • 0017002184 scopus 로고
    • Manifesto for a new bacteriology
    • In French
    • Sonea, S. & Panniset, M. 1976 Manifesto for a new bacteriology. Rev. Can. Biol. 35, 103-167. [In French.]
    • (1976) Rev. Can. Biol. , vol.35 , pp. 103-167
    • Sonea, S.1    Panniset, M.2
  • 132
    • 0001857547 scopus 로고
    • Some aspects of the biology of cells and their possible evolutionary significance
    • Stanier, R. Y. 1970 Some aspects of the biology of cells and their possible evolutionary significance. Symp. Soc. Gen. Microbiol. 20, 1-38.
    • (1970) Symp. Soc. Gen. Microbiol. , vol.20 , pp. 1-38
    • Stanier, R.Y.1
  • 134
    • 0034945935 scopus 로고    scopus 로고
    • Archaebacterial relationships of the phosphoenolpyruvate carboxykinase gene reveal mosaicism of Giardia intestinalis core metabolism
    • Suguri, S., Henze, K., Sanchez, L. B., Moore, D. V. & Muller, M. 2001 Archaebacterial relationships of the phosphoenolpyruvate carboxykinase gene reveal mosaicism of Giardia intestinalis core metabolism. J. Euk. Microbiol. 48, 493-497.
    • (2001) J. Euk. Microbiol. , vol.48 , pp. 493-497
    • Suguri, S.1    Henze, K.2    Sanchez, L.B.3    Moore, D.V.4    Muller, M.5
  • 135
    • 0028606283 scopus 로고
    • Horizontal gene transfer: Evidence and possible consequences
    • Syvanen, M. 1994 Horizontal gene transfer: evidence and possible consequences. A. Rev. Genet. 28, 237-261.
    • (1994) A. Rev. Genet. , vol.28 , pp. 237-261
    • Syvanen, M.1
  • 136
    • 0018414099 scopus 로고
    • Symbionticism revisited: A discussion of the evolutionary impact of intracellular symbioses
    • Taylor, F. J. 1979 Symbionticism revisited: a discussion of the evolutionary impact of intracellular symbioses. Proc. R. Soc. Lond. B 11, 267-286.
    • (1979) Proc. R. Soc. Lond. B , vol.11 , pp. 267-286
    • Taylor, F.J.1
  • 137
    • 0033043696 scopus 로고    scopus 로고
    • Is there a phylogenetic signal in prokaryote proteins?
    • Teichman, S. A. & Mitchison, G. 1999 Is there a phylogenetic signal in prokaryote proteins? J. Mol. Evol. 49, 98-107.
    • (1999) J. Mol. Evol. , vol.49 , pp. 98-107
    • Teichman, S.A.1    Mitchison, G.2
  • 138
    • 0034629478 scopus 로고    scopus 로고
    • Complete genome sequence of Neisseria meningitidis serogroup B strain MC58
    • Tettelin, H. (and 41 others) 2000 Complete genome sequence of Neisseria meningitidis serogroup B strain MC58. Science 287, 1809-1815.
    • (2000) Science , vol.287 , pp. 1809-1815
    • Tettelin, H.1
  • 139
    • 0035919670 scopus 로고    scopus 로고
    • Complete genome sequence of a virulent isolate of Streptococcus pneumoniae
    • Tettelin, H. (and 38 others) 2001 Complete genome sequence of a virulent isolate of Streptococcus pneumoniae. Science 293, 498-506.
    • (2001) Science , vol.293 , pp. 498-506
    • Tettelin, H.1
  • 140
    • 0029996029 scopus 로고    scopus 로고
    • Escape and migration of nucleic acids between chloroplasts, mitochondria, and the nucleus
    • Thorsness, P. E. & Weber, E. R. 1996 Escape and migration of nucleic acids between chloroplasts, mitochondria, and the nucleus. Int. Rev. Cytol. 165, 207-234.
    • (1996) Int. Rev. Cytol. , vol.165 , pp. 207-234
    • Thorsness, P.E.1    Weber, E.R.2
  • 141
    • 0027174162 scopus 로고
    • Nuclear mutations in Saccharomyces cerevisiae that affect the escape of DNA from mitochondria to the nucleus
    • Thorsness, P. E. & Fox, T. D. 1993 Nuclear mutations in Saccharomyces cerevisiae that affect the escape of DNA from mitochondria to the nucleus. Genetics 134, 21-28.
    • (1993) Genetics , vol.134 , pp. 21-28
    • Thorsness, P.E.1    Fox, T.D.2
  • 142
    • 0033979041 scopus 로고    scopus 로고
    • The glutamine synthetases of rhizobia: Phylogenetics and evolutionary implications
    • Turner, S. L. & Young, J. P. 2000 The glutamine synthetases of rhizobia: phylogenetics and evolutionary implications. Mol. Biol. Evol. 17, 309-319.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 309-319
    • Turner, S.L.1    Young, J.P.2
  • 143
    • 73649191344 scopus 로고
    • Infective heredity of multiple drug resistance in bacteria
    • Watanabe, T. 1963 Infective heredity of multiple drug resistance in bacteria. Bacteriol. Rev. 27, 87-115.
    • (1963) Bacteriol. Rev. , vol.27 , pp. 87-115
    • Watanabe, T.1
  • 144
    • 0032926125 scopus 로고    scopus 로고
    • Comparison of the evolutionary dynamics of symbiotic and housekeeping loci: A case for the genetic coherence of rhizobial lineages
    • Wernegreen, J. J. & Riley, M. A. 1999 Comparison of the evolutionary dynamics of symbiotic and housekeeping loci: a case for the genetic coherence of rhizobial lineages. Mol. Biol. Evol. 16, 98-113.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 98-113
    • Wernegreen, J.J.1    Riley, M.A.2
  • 145
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese, C. R. 1987 Bacterial evolution. Microbiol. Rev. 51, 221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 146
    • 0032499698 scopus 로고    scopus 로고
    • The universal ancestor
    • Woese, C. R. 1999 The universal ancestor. Proc. Natl Acad. Sci. USA 95, 6854-6859.
    • (1999) Proc. Natl Acad. Sci. USA , vol.95 , pp. 6854-6859
    • Woese, C.R.1
  • 147
    • 0034682457 scopus 로고    scopus 로고
    • Interpreting the universal phylogenetic tree
    • Woese, C. R. 2000 Interpreting the universal phylogenetic tree. Proc. Natl Acad. Sci. USA 97, 8392-8396.
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 8392-8396
    • Woese, C.R.1
  • 148
    • 0018877627 scopus 로고
    • Do genealogical patterns in purple photosynthetic bacteria reflect interspecific gene transfer?
    • Woese, C. R., Gibson, J. & Fox, G. E. 1980 Do genealogical patterns in purple photosynthetic bacteria reflect interspecific gene transfer? Nature 283, 212-214.
    • (1980) Nature , vol.283 , pp. 212-214
    • Woese, C.R.1    Gibson, J.2    Fox, G.E.3
  • 149
    • 0034053846 scopus 로고    scopus 로고
    • Aminoacyl-tRNA synthetases, the genetic code and the evolutionary process
    • Woese, C. R., Olsen, G. J., Ibba, M. & Soll, D. 2000 Aminoacyl-tRNA synthetases, the genetic code and the evolutionary process. Microbiol. Mol. Biol. Rev. 64, 202-236.
    • (2000) Microbiol. Mol. Biol. Rev. , vol.64 , pp. 202-236
    • Woese, C.R.1    Olsen, G.J.2    Ibba, M.3    Soll, D.4
  • 150
    • 0032830481 scopus 로고    scopus 로고
    • Evolution of aminoacyl-tRNA synthetases - Analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events
    • Wolf, Y. I., Aravind, L., Grishin, N. V. & Koonin, E. V. 1999 Evolution of aminoacyl-tRNA synthetases - analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events. Genome Res. 9, 689-710.
    • (1999) Genome Res. , vol.9 , pp. 689-710
    • Wolf, Y.I.1    Aravind, L.2    Grishin, N.V.3    Koonin, E.V.4
  • 151
    • 0034141421 scopus 로고    scopus 로고
    • Structural analysis of DNA sequence: Evidence for lateral gene transfer in Thermotoga maritima
    • Worning, P., Jensen, L. J., Nelson, K. E., Brunak, S. & Ussery, D. W. 2000 Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima. Nucleic Acids Res. 28, 706-709.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 706-709
    • Worning, P.1    Jensen, L.J.2    Nelson, K.E.3    Brunak, S.4    Ussery, D.W.5
  • 154
    • 0032835111 scopus 로고    scopus 로고
    • Distinct types of rRNA operons exist in the genome of the actinomycete Thermomonospora chromogena and evidence for horizontal transfer of an entire rRNA operon
    • Yap, W. H., Zhang, Z. & Wang, Y. 1999 Distinct types of rRNA operons exist in the genome of the actinomycete Thermomonospora chromogena and evidence for horizontal transfer of an entire rRNA operon. J. Bacteriol. 181, 5201-5209.
    • (1999) J. Bacteriol. , vol.181 , pp. 5201-5209
    • Yap, W.H.1    Zhang, Z.2    Wang, Y.3
  • 155
    • 9144225618 scopus 로고    scopus 로고
    • Bootstrap, Bayesian probability and maximum likelihood mapping: Exploring new tools for comparative genome analysis
    • Zhaxybayeva, O. & Gogarten, J. P. 2002 Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analysis. Genomics 3, 4.
    • (2002) Genomics , vol.3 , pp. 4
    • Zhaxybayeva, O.1    Gogarten, J.P.2
  • 156
    • 0001895697 scopus 로고
    • Evolutionary divergence and convergence in proteins
    • ed. V. Bryson & H. J. Vogel. New York: Academic Press
    • Zuckerkandl, E. & Pauling, L. 1965 Evolutionary divergence and convergence in proteins. In Evolving genes and proteins (ed. V. Bryson & H. J. Vogel), pp. 97-166. New York: Academic Press.
    • (1965) Evolving Genes and Proteins , pp. 97-166
    • Zuckerkandl, E.1    Pauling, L.2


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