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Volumn 181, Issue 17, 1999, Pages 5201-5209

Distinct types of rRNA operons exist in the genome of the actinomycete Thermomonospora chromogena and evidence for horizontal transfer of an entire rRNA operon

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE; RIBOSOME RNA;

EID: 0032835111     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.181.17.5201-5209.1999     Document Type: Article
Times cited : (223)

References (41)
  • 1
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., W. Lugwig, and K. H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Lugwig, W.2    Schleifer, K.H.3
  • 2
    • 1842362290 scopus 로고
    • Complete nucleotide sequence of a 16S ribosomal gene from Escherichia coli
    • Brosius, J., J. J. Palmer, J. P. Kennedy, and H. F. Noller. 1978. Complete nucleotide sequence of a 16S ribosomal gene from Escherichia coli. Proc. Natl. Acad. Sci. USA 75:4801-4805.
    • (1978) Proc. Natl. Acad. Sci. USA , vol.75 , pp. 4801-4805
    • Brosius, J.1    Palmer, J.J.2    Kennedy, J.P.3    Noller, H.F.4
  • 3
    • 0029955186 scopus 로고    scopus 로고
    • Evidence that two types of 18S rDNA coexist in the genome of Dugesia (Schmidtea) mediterranea (Platyhelminthes, Turbellaria, Tricladida)
    • Carranza, S., G. Giribet, C. Riberat, J. Baguna, and M. Riutort. 1996. Evidence that two types of 18S rDNA coexist in the genome of Dugesia (Schmidtea) mediterranea (Platyhelminthes, Turbellaria, Tricladida). Mol. Biol. Evol. 13:824-832.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 824-832
    • Carranza, S.1    Giribet, G.2    Riberat, C.3    Baguna, J.4    Riutort, M.5
  • 4
    • 0029027263 scopus 로고
    • Intraspecific variation in small subunit rRNA sequences in GenBank: Why single sequences may not adequately represent prokaryotic taxa
    • Clayton, R. A., G. Sutton, P. S. Hinkle, Jr., C. Bult, and C. Fields. 1995. Intraspecific variation in small subunit rRNA sequences in GenBank: why single sequences may not adequately represent prokaryotic taxa. Int. J. Syst. Bacteriol. 45:595-599.
    • (1995) Int. J. Syst. Bacteriol. , vol.45 , pp. 595-599
    • Clayton, R.A.1    Sutton, G.2    Hinkle P.S., Jr.3    Bult, C.4    Fields, C.5
  • 5
    • 0026743359 scopus 로고
    • Analysis of operons encoding 23S rRNA of Clostridium botulinum type A
    • East, A. K., D. E. Thompson, and M. D. Collins. 1992. Analysis of operons encoding 23S rRNA of Clostridium botulinum type A. J. Bacteriol. 174:8158-8162.
    • (1992) J. Bacteriol. , vol.174 , pp. 8158-8162
    • East, A.K.1    Thompson, D.E.2    Collins, M.D.3
  • 6
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 44:159-173.
    • (1985) Evolution , vol.44 , pp. 159-173
    • Felsenstein, J.1
  • 7
    • 0030696044 scopus 로고    scopus 로고
    • Determining divergence times with a protein clock: Update and reevaluation
    • Feng, D. F., G. Cho, and R. F. Doolittle. 1997. Determining divergence times with a protein clock: update and reevaluation. Proc. Natl. Acad. Sci. USA 94:13028-13033.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 13028-13033
    • Feng, D.F.1    Cho, G.2    Doolittle, R.F.3
  • 8
    • 0026596979 scopus 로고
    • Horizontal transfer of a phophatase gene as evidence for mosaic structure of the Salmonella genome
    • Groisman, E. A., M. H. Saler, Jr., and H. Ochman. 1992. Horizontal transfer of a phophatase gene as evidence for mosaic structure of the Salmonella genome. EMBO J. 11:1309-1316.
    • (1992) EMBO J. , vol.11 , pp. 1309-1316
    • Groisman, E.A.1    Saler M.H., Jr.2    Ochman, H.3
  • 11
    • 0030054296 scopus 로고    scopus 로고
    • New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region
    • Gurtler, V., and V. A. Stanisich. 1996. New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region. Microbiology 142:3-16.
    • (1996) Microbiology , vol.142 , pp. 3-16
    • Gurtler, V.1    Stanisich, V.A.2
  • 12
    • 0028261409 scopus 로고
    • Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective
    • Gutell, R. G., N. Larsen, and C. R. Woese. 1994. Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective. Microbiol. Rev. 58:10-26.
    • (1994) Microbiol. Rev. , vol.58 , pp. 10-26
    • Gutell, R.G.1    Larsen, N.2    Woese, C.R.3
  • 13
    • 0026063996 scopus 로고
    • Evidence for biased gene conversion in concerted evolution of ribosomal DNA
    • Hillis, D. M., C. Moritz, C. A. Porter, and R. J. Baker. 1990. Evidence for biased gene conversion in concerted evolution of ribosomal DNA. Science 251:308-310.
    • (1990) Science , vol.251 , pp. 308-310
    • Hillis, D.M.1    Moritz, C.2    Porter, C.A.3    Baker, R.J.4
  • 14
    • 0029883357 scopus 로고    scopus 로고
    • Optimization of DNase I removal of contaminating DNA from RNA for use in quantitative RNA-PCR
    • Huang, Z., M. J. Fasco, and L. S. Kaminsky. 1996. Optimization of DNase I removal of contaminating DNA from RNA for use in quantitative RNA-PCR. BioTechniques 20:1012-1020.
    • (1996) Biotechniques , vol.20 , pp. 1012-1020
    • Huang, Z.1    Fasco, M.J.2    Kaminsky, L.S.3
  • 16
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H. N. Monro (ed.), Academic Press, New York, N.Y.
    • Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules, p. 21-132. In H. N. Monro (ed.), Mammalian protein metabolism. Academic Press, New York, N.Y.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 17
    • 0022981322 scopus 로고
    • Nucleolytic processing of ribonucleic acid transcripts in prokaryotes
    • King, T. C., R. Sirdeskmukh, and D. Schlessinger. 1986. Nucleolytic processing of ribonucleic acid transcripts in prokaryotes. Microbiol. Rev. 58: 428-451.
    • (1986) Microbiol. Rev. , vol.58 , pp. 428-451
    • King, T.C.1    Sirdeskmukh, R.2    Schlessinger, D.3
  • 18
    • 0032514693 scopus 로고    scopus 로고
    • Natural genetic exchange between Haemophilus and Neisseria: Intergeneric transfer of chromosomal genes between major human pathogens
    • Kroll, J. S., K. E. Wilks, J. L. Farrant, and P. R. Langford. 1998. Natural genetic exchange between Haemophilus and Neisseria: intergeneric transfer of chromosomal genes between major human pathogens. Proc. Natl. Acad. Sci. USA 95:12381-12385.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 12381-12385
    • Kroll, J.S.1    Wilks, K.E.2    Farrant, J.L.3    Langford, P.R.4
  • 19
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. Stacketbrandt and M. Goodfellow (ed.), John Wiley & Sons, Chichester, England
    • Lane, D. J. 1991.16S/23S rRNA sequencing, p. 115-175. In E. Stacketbrandt and M. Goodfellow (ed.), Sequencing and hybridization techniques in bacterial systematics. John Wiley & Sons, Chichester, England.
    • (1991) Sequencing and Hybridization Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 20
    • 0030994798 scopus 로고    scopus 로고
    • Amelioration of bacterial genome: Rates of change and exchange
    • Lawrence, J. G., and H. Ochman. 1997. Amelioration of bacterial genome: rates of change and exchange. J. Mol. Evol. 44:383-397.
    • (1997) J. Mol. Evol. , vol.44 , pp. 383-397
    • Lawrence, J.G.1    Ochman, H.2
  • 22
    • 0018814593 scopus 로고
    • Repeated genes in eukaryotes
    • Long, E. O., and I. B. Dawid. 1980. Repeated genes in eukaryotes. Annu. Rev. Biochem. 49:727-764.
    • (1980) Annu. Rev. Biochem. , vol.49 , pp. 727-764
    • Long, E.O.1    Dawid, I.B.2
  • 23
  • 25
    • 0000369451 scopus 로고
    • Thermomonospora and related genera
    • S. T. Williams, M. E. Sharpe, and J. G. Holt (ed.), Williams & Wilkins, Baltimore, Md.
    • McCarthy, A. J. 1989. Thermomonospora and related genera, p. 2552-2572. In S. T. Williams, M. E. Sharpe, and J. G. Holt (ed.), Bergey's manual of systematic bacteriology, vol. 4. Williams & Wilkins, Baltimore, Md.
    • (1989) Bergey's Manual of Systematic Bacteriology , vol.4 , pp. 2552-2572
    • McCarthy, A.J.1
  • 26
    • 0022560055 scopus 로고
    • Ribosomal genes of Plasmodium
    • McCutchan, T. F. 1986. Ribosomal genes of Plasmodium. Int. Rev. Cytol. 99:295-309.
    • (1986) Int. Rev. Cytol. , vol.99 , pp. 295-309
    • McCutchan, T.F.1
  • 28
    • 0026602645 scopus 로고
    • Sequence heterogeneity between the two genes encoding 16S rRNA from the halophilic archaebacterium Halobacterium marismortui
    • Mylvaganam, S., and P. P. Dennis. 1992. Sequence heterogeneity between the two genes encoding 16S rRNA from the halophilic archaebacterium Halobacterium marismortui. Genetics 130:399-410.
    • (1992) Genetics , vol.130 , pp. 399-410
    • Mylvaganam, S.1    Dennis, P.P.2
  • 29
    • 0028051326 scopus 로고
    • Intergeneric transfer and recombination of the 6-phosphogluconate dehydrogenase gene (gnd) in enteric bacteria
    • Nelson, K., and R-K. Selander. 1994. Intergeneric transfer and recombination of the 6-phosphogluconate dehydrogenase gene (gnd) in enteric bacteria. Proc. Natl. Acad. Sci. USA 91:10227-10231.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 10227-10231
    • Nelson, K.1    Selander, R.-K.2
  • 30
    • 0031969764 scopus 로고    scopus 로고
    • 16S rRNA sequence diversity in Mycobacterium celatum strains caused by presence of two different copies of 16S rRNA gene
    • Reischl, U., K. Feldmann, L. Naumann, B. J. Gaugler, B. Ninet, and B. Hirschel. 1998. 16S rRNA sequence diversity in Mycobacterium celatum strains caused by presence of two different copies of 16S rRNA gene. J. Clin. Microbiol. 36:1761-1764.
    • (1998) J. Clin. Microbiol. , vol.36 , pp. 1761-1764
    • Reischl, U.1    Feldmann, K.2    Naumann, L.3    Gaugler, B.J.4    Ninet, B.5    Hirschel, B.6
  • 31
    • 0023375195 scopus 로고
    • The neighbour-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 33
    • 0027305615 scopus 로고
    • Evidence from Aeromonas for genetic crossing-over in ribosomal sequences
    • Sneath, P. H. A. 1993. Evidence from Aeromonas for genetic crossing-over in ribosomal sequences. Int. J. Syst. Bacteriol. 43:626-629.
    • (1993) Int. J. Syst. Bacteriol. , vol.43 , pp. 626-629
    • Sneath, P.H.A.1
  • 34
    • 0028606283 scopus 로고
    • Horizontal gene transfer: Evidence and possible consequences
    • Syvanen, M. 1994. Horizontal gene transfer: evidence and possible consequences. Annu. Rev. Genet. 28:237-261.
    • (1994) Annu. Rev. Genet. , vol.28 , pp. 237-261
    • Syvanen, M.1
  • 35
    • 0029789623 scopus 로고    scopus 로고
    • A quantitative map of nucleotide substitution rates in bacterial rRNA
    • Van de Peer, Y., S. Chapelle, and R. D. Wachter. 1996. A quantitative map of nucleotide substitution rates in bacterial rRNA. Nucleic Acid Res. 24: 3381-3391.
    • (1996) Nucleic Acid Res. , vol.24 , pp. 3381-3391
    • Van De Peer, Y.1    Chapelle, S.2    Wachter, R.D.3
  • 36
    • 0029799201 scopus 로고    scopus 로고
    • A proposal to transfer Microbispora bispora (Lechevalier 1965) to a new genus, Thermobispora gen. nov., as Thermobispora bispora comb. nov
    • Wang, Y., Z. S. Zhang, and J. S. Ruan. 1996. A proposal to transfer Microbispora bispora (Lechevalier 1965) to a new genus, Thermobispora gen. nov., as Thermobispora bispora comb. nov. Int. J. Syst. Bacteriol. 46:933-938.
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 933-938
    • Wang, Y.1    Zhang, Z.S.2    Ruan, J.S.3
  • 37
    • 0030977047 scopus 로고    scopus 로고
    • The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes
    • Wang, Y., Z. S. Zhang, and N. Ramanan. 1997. The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes. J. Bacteriol. 179:3270-3276.
    • (1997) J. Bacteriol. , vol.179 , pp. 3270-3276
    • Wang, Y.1    Zhang, Z.S.2    Ramanan, N.3
  • 38
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese, C. R. 1987. Bacterial evolution. Microbial. Rev. 51:221-271.
    • (1987) Microbial. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 39
  • 40
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria and Eucarya
    • Woese, C. R., O. Kandler, and M. L. Wheelis. 1990. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria and Eucarya. Proc. Natl. Acad. Sci. USA 87:4576-4579.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 41
    • 0031799382 scopus 로고    scopus 로고
    • Reclassification of Thermomonospora and Microtetraspora
    • Zhang, Z. S., Y. Wang, and J. S. Ruan. 1998. Reclassification of Thermomonospora and Microtetraspora. Int. J. Syst. Bacteriol. 48:411-422.
    • (1998) Int. J. Syst. Bacteriol. , vol.48 , pp. 411-422
    • Zhang, Z.S.1    Wang, Y.2    Ruan, J.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.