메뉴 건너뛰기




Volumn 181, Issue 2, 1999, Pages 434-443

Discontinuous occurrence of the hsp70 (dnaK) gene among Archaea and sequence features of HSP70 suggest a novel outlook on phylogenies inferred from this protein

Author keywords

[No Author keywords available]

Indexed keywords

HEAT SHOCK PROTEIN 70; RIBOSOME RNA;

EID: 0032956536     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.181.2.434-443.1999     Document Type: Article
Times cited : (87)

References (55)
  • 2
    • 0029819318 scopus 로고    scopus 로고
    • The root of the universal tree and the origin of eucaryotes based on elongation factor phylogeny
    • Baldauf, S. L., J. D. Palmer, and W. F. Doolittle. 1996. The root of the universal tree and the origin of eucaryotes based on elongation factor phylogeny. Proc. Natl. Acad. Sci. USA 93:7749-7754.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 7749-7754
    • Baldauf, S.L.1    Palmer, J.D.2    Doolittle, W.F.3
  • 3
    • 0029832927 scopus 로고    scopus 로고
    • Perspectives on archaeal diversity, thermophily and monophily from environmental rRNA sequences
    • Barns, S. M., C. F. Delwiche, J. D. Palmer, and N. R. Pace. 1996. Perspectives on archaeal diversity, thermophily and monophily from environmental rRNA sequences. Proc. Natl. Acad. Sci. USA 93:9188-9183.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 9188-19183
    • Barns, S.M.1    Delwiche, C.F.2    Palmer, J.D.3    Pace, N.R.4
  • 4
    • 0017148259 scopus 로고
    • A general method for the isolation of high molecular weight DNA from eukaryotes
    • Blin, N., and D. W. Stafford. 1976. A general method for the isolation of high molecular weight DNA from eukaryotes. Nucleic Acids Res. 3:2303-2308.
    • (1976) Nucleic Acids Res. , vol.3 , pp. 2303-2308
    • Blin, N.1    Stafford, D.W.2
  • 5
    • 0029587036 scopus 로고
    • Arrangement and nucleotide sequence of the gene (fus) encoding elongation factor G (EF-G) from the hyperthermophilic bacterium Aquifex pyrophilus: Phylogenetic depth of hyperthermophilic bacteria inferred from analysis of the EF-G/fus sequences
    • Bocchetta, M., E. Ceccarelli, R. Creti, A. M. Sanangelantoni, O. Tiboni, and P. Cammarano. 1995. Arrangement and nucleotide sequence of the gene (fus) encoding elongation factor G (EF-G) from the hyperthermophilic bacterium Aquifex pyrophilus: phylogenetic depth of hyperthermophilic bacteria inferred from analysis of the EF-G/fus sequences. J. Mol. Evol. 41:803-812.
    • (1995) J. Mol. Evol. , vol.41 , pp. 803-812
    • Bocchetta, M.1    Ceccarelli, E.2    Creti, R.3    Sanangelantoni, A.M.4    Tiboni, O.5    Cammarano, P.6
  • 6
  • 7
    • 0028941917 scopus 로고
    • Root of the universal tree of life based on ancient aminoacyl-tRNA synthetase gene duplications
    • Brown, J. R., and W. F. Doolittle. 1995. Root of the universal tree of life based on ancient aminoacyl-tRNA synthetase gene duplications. Proc. Natl. Acad. Sci. USA 92:2441-2445.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 2441-2445
    • Brown, J.R.1    Doolittle, W.F.2
  • 8
    • 0028308478 scopus 로고
    • Evolutionary relationships of bacterial and archaeal glutamine synthetase genes
    • Brown, J. R., Y. Masuchi, F. T. Robb, and W. F. Doolitlle. 1994 Evolutionary relationships of bacterial and archaeal glutamine synthetase genes. J. Mol. Evol. 38:566-576.
    • (1994) J. Mol. Evol. , vol.38 , pp. 566-576
    • Brown, J.R.1    Masuchi, Y.2    Robb, F.T.3    Doolitlle, W.F.4
  • 11
    • 0032852966 scopus 로고    scopus 로고
    • Splitting the archaea? a phylogeny of translational elongation factor G(2) sequences inferred from an optimized selection of alignment positions
    • in press
    • Cammarano, P., R. Creti, A. M. Sanangelantoni, and P. Palm. Splitting the Archaea? A phylogeny of translational elongation factor G(2) sequences inferred from an optimized selection of alignment positions. J. Mol. Evol., in press.
    • J. Mol. Evol.
    • Cammarano, P.1    Creti, R.2    Sanangelantoni, A.M.3    Palm, P.4
  • 12
    • 0027035025 scopus 로고
    • Origins of secondary metabolism
    • Cavalier-Smith, T. 1992. Origins of secondary metabolism. Ciba Found. Symp. 171:64-87.
    • (1992) Ciba Found. Symp. , vol.171 , pp. 64-87
    • Cavalier-Smith, T.1
  • 13
    • 0025151106 scopus 로고
    • A review of the role of 70k Da heat shock proteins in protein translocation across membranes
    • Craig, E. A., P. J. Kang, and W. Boorstein. 1990. A review of the role of 70k Da heat shock proteins in protein translocation across membranes. Antonie Leeuwenhoek 58:137-146.
    • (1990) Antonie Leeuwenhoek , vol.58 , pp. 137-146
    • Craig, E.A.1    Kang, P.J.2    Boorstein, W.3
  • 15
    • 0021760092 scopus 로고
    • A comprehensive set of sequence analysis program for the VAX
    • Devereux, J., P. Haeberli, and O. Smithies. 1984. A comprehensive set of sequence analysis program for the VAX. Nucleic Acids Res. 12:387-395.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 387-395
    • Devereux, J.1    Haeberli, P.2    Smithies, O.3
  • 16
    • 0003437299 scopus 로고
    • Department of Genetics, University of Washington, Seattle, Wash. (Distributed by the author.)
    • Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package) version 3.5c. Department of Genetics, University of Washington, Seattle, Wash. (Distributed by the author.)
    • (1993) PHYLIP (Phylogeny Inference Package) Version 3.5c.
    • Felsenstein, J.1
  • 18
    • 0028888465 scopus 로고
    • Protein based phylogenics support a chimeric origin tor the eukaryotic genome
    • Golding, G. B., and R. S. Gupta. 1995. Protein based phylogenics support a chimeric origin tor the eukaryotic genome. Mol. Biol. Evol. 12:1-6.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 1-6
    • Golding, G.B.1    Gupta, R.S.2
  • 19
    • 0031735878 scopus 로고    scopus 로고
    • The root of the universal tree of life inferred from anciently duplicated genes encoding components of the protein-targeting machinery
    • Gribaldo, S., and P. Cammarano. 1998. The root of the universal tree of life inferred from anciently duplicated genes encoding components of the protein-targeting machinery. J. Mol. Evol. 47:508-516.
    • (1998) J. Mol. Evol. , vol.47 , pp. 508-516
    • Gribaldo, S.1    Cammarano, P.2
  • 20
    • 0026692645 scopus 로고
    • Cloning of the HSP70 gene from Halobacterium marismortui: Relatedness of archaebacterial HSP70 to its eubacterial homologs and a model for the evolution of the HSP70 gene
    • Gupta, R. S., and B. Singh, 1992. Cloning of the HSP70 gene from Halobacterium marismortui: relatedness of archaebacterial HSP70 to its eubacterial homologs and a model for the evolution of the HSP70 gene. J. Bacteriol. 174:4594-4605.
    • (1992) J. Bacteriol. , vol.174 , pp. 4594-4605
    • Gupta, R.S.1    Singh, B.2
  • 21
    • 0027420885 scopus 로고
    • Evolution of HSP70 gene and its implications regarding relationships between archaebacteria. Eubacteria and eukaryotes
    • Gupta, R. S., and G. B. Golding. 1993. Evolution of HSP70 gene and its implications regarding relationships between Archaebacteria. Eubacteria and Eukaryotes. J. Mol. Evol. 37:573-582.
    • (1993) J. Mol. Evol. , vol.37 , pp. 573-582
    • Gupta, R.S.1    Golding, G.B.2
  • 22
    • 0028674882 scopus 로고
    • Phylogenetic analysis of 70 kDa heat shock protein sequences suggests a chimeric origin for the eukaryotic cell nucleus
    • Gupta, R. S., and B. Singh. 1994. Phylogenetic analysis of 70 kDa heat shock protein sequences suggests a chimeric origin for the eukaryotic cell nucleus. Curr. Biol. 4:1104-1114.
    • (1994) Curr. Biol. , vol.4 , pp. 1104-1114
    • Gupta, R.S.1    Singh, B.2
  • 23
    • 0028344493 scopus 로고
    • Cloning of Giardia lamblia heat shock protein hsp70 homologs: Implications regarding origin of eukaryotic cells and of endoplasmic reticulum
    • Gupta, R. S., K. Aitken, M. Falah, and B. Singh. 1994. Cloning of Giardia lamblia heat shock protein hsp70 homologs: implications regarding origin of eukaryotic cells and of endoplasmic reticulum. Proc. Natl. Acad. Sci. USA 91:2895-2899.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 2895-2899
    • Gupta, R.S.1    Aitken, K.2    Falah, M.3    Singh, B.4
  • 24
    • 0029923838 scopus 로고    scopus 로고
    • The origin of the eukaryotic cell
    • Gupta, R. S., and G. B. Golding. 1996. The origin of the eukaryotic cell. Trends Biochem. Sci. 21:166-171.
    • (1996) Trends Biochem. Sci. , vol.21 , pp. 166-171
    • Gupta, R.S.1    Golding, G.B.2
  • 25
    • 0031022823 scopus 로고    scopus 로고
    • Sequencing of heat shock protein 70 (DnaK) homologs from deinococcus proteolyticus and Thermomicrobium roseum and their integration in a protein-based phylogeny of prokaryotes
    • Gupta, R. S., K. Bustard, M. Falah. and D. Singh. 1997. Sequencing of heat shock protein 70 (DnaK) homologs from Deinococcus proteolyticus and Thermomicrobium roseum and their integration in a protein-based phylogeny of prokaryotes. J. Baeteriol. 179:345-357.
    • (1997) J. Baeteriol. , vol.179 , pp. 345-357
    • Gupta, R.S.1    Bustard, K.2    Falah, M.3    Singh, D.4
  • 26
    • 0029992278 scopus 로고    scopus 로고
    • Molecular chaperones in cellular protein folding
    • Hartl, F. U. 1996. Molecular chaperones in cellular protein folding. Nature 381:571-580.
    • (1996) Nature , vol.381 , pp. 571-580
    • Hartl, F.U.1
  • 27
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • Henikoff, S., and J. G. Henikoff. 1992. Amino acid substitution matrices from protein blocks. Proc. Natl. Acad. Sci. USA 89:10915-10919.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 28
    • 0025911026 scopus 로고
    • Heat shock response of the archaebacterium Methanococcus voltae
    • Herbert, M., A. M. Kropinski, and K. F. Jarrel. 1991. Heat shock response of the archaebacterium Methanococcus voltae. J. Bacteriol. 173:3224-3227.
    • (1991) J. Bacteriol. , vol.173 , pp. 3224-3227
    • Herbert, M.1    Kropinski, A.M.2    Jarrel, K.F.3
  • 29
    • 0022522022 scopus 로고
    • Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90°C
    • Huber, R., T. A. Langworthy, H. Koning, M. Thomm, C. R. Woese, U. B. Sleytr, and K. O. Stetter. 1986. Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90°C. Arch. Microbiol. 144:324-333.
    • (1986) Arch. Microbiol. , vol.144 , pp. 324-333
    • Huber, R.1    Langworthy, T.A.2    Koning, H.3    Thomm, M.4    Woese, C.R.5    Sleytr, U.B.6    Stetter, K.O.7
  • 31
    • 0024358140 scopus 로고
    • Evolutionary relationship of archaea. bacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes
    • Iwabe, N., K. Kuma, M. Hasegawa, S. Osawa, and T. Miyata. 1989. Evolutionary relationship of Archaea. Bacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc. Natl. Acad. Sci. USA 86:9355-9359.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 9355-9359
    • Iwabe, N.1    Kuma, K.2    Hasegawa, M.3    Osawa, S.4    Miyata, T.5
  • 35
    • 0029815789 scopus 로고    scopus 로고
    • Phylogenetic analysis of carbamoylphosphate synthetase genes: Evolution involving multiple gene duplications, gene fusions, and insertions and deletions of surrounding sequences
    • Lawson, F. S., R. L. Charlebois, and J. A. R. Dillon. 1996. Phylogenetic analysis of carbamoylphosphate synthetase genes: evolution involving multiple gene duplications, gene fusions, and insertions and deletions of surrounding sequences. Mol. Biol. Evol. 13:970-977.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 970-977
    • Lawson, F.S.1    Charlebois, R.L.2    Dillon, J.A.R.3
  • 36
    • 0025117682 scopus 로고
    • Complete nucleotide sequence of seven eubacterial genes coding for the elongation factor Tu: Functional, structural and phylogenetic evaluations
    • Ludwig, W., M. Weizenegger, D. Betzl, E. Leidel, T. Lenz, A. Ludvigsen, D. Mollendorf, P. Wenzig, and K. H. Schleifer. 1990. Complete nucleotide sequence of seven eubacterial genes coding for the elongation factor Tu: functional, structural and phylogenetic evaluations. Arch. Microbiol. 153: 241-247.
    • (1990) Arch. Microbiol. , vol.153 , pp. 241-247
    • Ludwig, W.1    Weizenegger, M.2    Betzl, D.3    Leidel, E.4    Lenz, T.5    Ludvigsen, A.6    Mollendorf, D.7    Wenzig, P.8    Schleifer, K.H.9
  • 37
    • 0025787885 scopus 로고
    • A dnaK homolog in the archaebacterium Methanosarcina mazei S-6
    • Macario, A. J. L., C. B. Dugan, and E. Conway de Macario. 1991. A dnaK homolog in the archaebacterium Methanosarcina mazei S-6. Gene 108:133-137.
    • (1991) Gene , vol.108 , pp. 133-137
    • Macario, A.J.L.1    Dugan, C.B.2    Conway De Macario, E.3
  • 38
    • 0029861894 scopus 로고    scopus 로고
    • Multiple DNA and protein sequence alignment based on segment-to-segment comparison
    • Morgenstern, B., A. Dress, and T. Werner. 1996. Multiple DNA and protein sequence alignment based on segment-to-segment comparison. Proc. Natl. Acad. Sci. USA 93:12098-12103.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 12098-12103
    • Morgenstern, B.1    Dress, A.2    Werner, T.3
  • 39
    • 0028200082 scopus 로고
    • Identification of dnaK multigene family in Synechococcus sp. strain PCC 7942
    • Nimura, K., H. Yoshikawa, and H. Takahashi. 1994. Identification of dnaK multigene family in Synechococcus sp. strain PCC 7942. Biochem. Biophys. Res. Commun. 201:466-471.
    • (1994) Biochem. Biophys. Res. Commun. , vol.201 , pp. 466-471
    • Nimura, K.1    Yoshikawa, H.2    Takahashi, H.3
  • 40
    • 0028055018 scopus 로고
    • The winds of (evolutionary) change: Breathing new life into microbiology
    • Olsen, G. J., C. R. Woese, and R. Overbeek. 1994. The winds of (evolutionary) change: breathing new life into microbiology. J. Bacteriol. 176:1-6.
    • (1994) J. Bacteriol. , vol.176 , pp. 1-6
    • Olsen, G.J.1    Woese, C.R.2    Overbeek, R.3
  • 41
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparisons
    • Pearson, W. R., and D. J. Lipman. 1988. Improved tools for biological sequence comparisons. Proc. Natl. Acad. Sci. USA 85:2444-2448.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 42
    • 0030267461 scopus 로고    scopus 로고
    • A chimeric origin for eukaryotes re-examined
    • Roger, A. J., and J. R. Brown. 1996. A chimeric origin for eukaryotes re-examined. Trends Biol. Sci. 21:370-371.
    • (1996) Trends Biol. Sci. , vol.21 , pp. 370-371
    • Roger, A.J.1    Brown, J.R.2
  • 45
    • 0028293312 scopus 로고
    • A gene encoding a new Dnak/hsp70 homolog in Escherichia coli
    • Seaton, B. L., and L. E. Vickery. 1994. A gene encoding a new Dnak/hsp70 homolog in Escherichia coli. Proc. Natl. Acad. Sci. USA 91:2066-2070.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 2066-2070
    • Seaton, B.L.1    Vickery, L.E.2
  • 47
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
    • Strimmer, K., and A. Von Haeseler. 1996. Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13:964-969.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 48
    • 0031002417 scopus 로고    scopus 로고
    • Likelihood mapping: A simple method to visualize the phylogenetic content of a sequence alignment
    • Strimmer, K., and A. Von Haeseler. 1997. Likelihood mapping: a simple method to visualize the phylogenetic content of a sequence alignment. Proc. Natl. Acad. Sci. USA 94:6815-6819.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 6815-6819
    • Strimmer, K.1    Von Haeseler, A.2
  • 49
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 50
    • 0027263638 scopus 로고
    • Cloning and sequencing of the gene encoding glutamine synthetase I from the archaeum Pyrococcus woesei: Anomalous phylogenies inferred from analysis of archaeal and bacterial glutamine synthetase I sequences
    • Tiboni, O., P. Cammarano, and A. M. Sanangelantoni. 1993. Cloning and sequencing of the gene encoding glutamine synthetase I from the Archaeum Pyrococcus woesei: anomalous phylogenies inferred from analysis of archaeal and bacterial glutamine synthetase I sequences. J. Bacteriol. 175:2961-2969.
    • (1993) J. Bacteriol. , vol.175 , pp. 2961-2969
    • Tiboni, O.1    Cammarano, P.2    Sanangelantoni, A.M.3
  • 52
    • 0030744907 scopus 로고    scopus 로고
    • The presence of a dnak (HSP70) multigene family in members of the orders Planctomytales and Verrucomicrobiales
    • Ward-Rayney, N., F. A. Rainey, and E. Stackebrandt. 1997. The presence of a dnaK (HSP70) multigene family in members of the orders Planctomytales and Verrucomicrobiales. J. Bacteriol. 179:6360-6366.
    • (1997) J. Bacteriol. , vol.179 , pp. 6360-6366
    • Ward-Rayney, N.1    Rainey, F.A.2    Stackebrandt, E.3
  • 53
    • 0000631834 scopus 로고
    • Phylogenetic structure of the prokaryotic domain: The primary kingdoms
    • Woese, C. R., and G. E. Fox. 1977. Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc. Natl. Acad. Sci. USA 51:221-271.
    • (1977) Proc. Natl. Acad. Sci. USA , vol.51 , pp. 221-271
    • Woese, C.R.1    Fox, G.E.2
  • 54
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains archoea, bacteria and eucarya
    • Woese, C. R., O. Kandler, and M. L. Wheelis. 1990. Towards a natural system of organisms: proposal for the domains Archoea, Bacteria and Eucarya. Proc. Natl. Acad. Sci. USA 87:4576-4579.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.