-
1
-
-
0035158352
-
Key role for sulfur in peptide metabolism and in regulation of three hydrogenases in the hyperthermophilic archaeon Pyrococcus furiosus
-
Adams, M. W. W., J. F. Holden, A. L. Menon, G. J. Schut, A. M. Grunden, C. Hou, A. M. Hutchins, F. E. Jenney, C. Kim, K. Ma, G. Pan, R. Roy, R. Sapra, S. V. Story, and M. F. Verhagen. 2001. Key role for sulfur in peptide metabolism and in regulation of three hydrogenases in the hyperthermophilic archaeon Pyrococcus furiosus. J. Bacteriol. 183:716-724.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 716-724
-
-
Adams, M.W.W.1
Holden, J.F.2
Menon, A.L.3
Schut, G.J.4
Grunden, A.M.5
Hou, C.6
Hutchins, A.M.7
Jenney, F.E.8
Kim, C.9
Ma, K.10
Pan, G.11
Roy, R.12
Sapra, R.13
Story, S.V.14
Verhagen, M.F.15
-
3
-
-
0033859551
-
The role of lateral gene transfer in the evolution of isoprenoid biosynthesis pathways
-
Boucher, Y., and W. F. Doolittle. 2000. The role of lateral gene transfer in the evolution of isoprenoid biosynthesis pathways. Mol. Microbiol. 37:703-716.
-
(2000)
Mol. Microbiol.
, vol.37
, pp. 703-716
-
-
Boucher, Y.1
Doolittle, W.F.2
-
4
-
-
0034942865
-
Universal trees based on large combined protein sequence data sets
-
Brown, J. R., C. J. Douady, M. J. Italia, W. E. Marshall, and M. J. Stanhope. 2001. Universal trees based on large combined protein sequence data sets. Nat. Genet. 28:281-285.
-
(2001)
Nat. Genet.
, vol.28
, pp. 281-285
-
-
Brown, J.R.1
Douady, C.J.2
Italia, M.J.3
Marshall, W.E.4
Stanhope, M.J.5
-
6
-
-
0029809180
-
Characterization of the aegA locus of Escherichia coli: Control of gene expression in response to anaerobiosis and nitrate
-
Cavicchioli, R., T. Kolesnikow, R. C. Chiang, and R. P. Gunsalus. 1996. Characterization of the aegA locus of Escherichia coli: control of gene expression in response to anaerobiosis and nitrate. J. Bacteriol. 178:6968-6974.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 6968-6974
-
-
Cavicchioli, R.1
Kolesnikow, T.2
Chiang, R.C.3
Gunsalus, R.P.4
-
7
-
-
0031045804
-
Direct amplification of unknown genes and fragments by uneven polymerase chain reaction
-
Chen, X., and R. Wu. 1997. Direct amplification of unknown genes and fragments by uneven polymerase chain reaction. Gene 185:195-199.
-
(1997)
Gene
, vol.185
, pp. 195-199
-
-
Chen, X.1
Wu, R.2
-
8
-
-
0033752502
-
Lateral gene transfer and metabolic adaptation in the human parasite Trichomonas vaginalis
-
de Koning, A. P., F. S. L. Brinkman, S. J. M. Jones, and P. J. Keeling. 2000. Lateral gene transfer and metabolic adaptation in the human parasite Trichomonas vaginalis. Mol. Biol. Evol. 17:1769-1773.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1769-1773
-
-
De Koning, A.P.1
Brinkman, F.S.L.2
Jones, S.J.M.3
Keeling, P.J.4
-
9
-
-
0032404453
-
You are what you eat: A gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes
-
Doolittle, W. F. 1998. You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes. Trends Genet. 14:307-311.
-
(1998)
Trends Genet.
, vol.14
, pp. 307-311
-
-
Doolittle, W.F.1
-
10
-
-
0033603539
-
Phylogenetic classification and the universal tree
-
Doolittle, W. F. 1999. Phylogenetic classification and the universal tree. Science 284:2124-2129.
-
(1999)
Science
, vol.284
, pp. 2124-2129
-
-
Doolittle, W.F.1
-
11
-
-
0000122573
-
Phylogeny inference package (version 3.2)
-
Felsenstein, J. 1989. Phylogeny inference package (version 3.2). Clad. 5:166.
-
(1989)
Clad.
, vol.5
, pp. 166
-
-
Felsenstein, J.1
-
12
-
-
0033710968
-
Early lateral transfer of genes encoding malic enzyme, acetyl-CoA synthetase and alcohol dehydrogenases from anaerobic prokaryotes to Entamoeba histolytica
-
Field, J., B. Rosenthal, and J. Samuelson. 2000. Early lateral transfer of genes encoding malic enzyme, acetyl-CoA synthetase and alcohol dehydrogenases from anaerobic prokaryotes to Entamoeba histolytica. Mol. Microbiol. 38:446-455.
-
(2000)
Mol. Microbiol.
, vol.38
, pp. 446-455
-
-
Field, J.1
Rosenthal, B.2
Samuelson, J.3
-
13
-
-
0033004743
-
Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions
-
Foster, P. G., and D. A. Hickey. 1999. Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions. J. Mol. Evol. 48:284-290.
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 284-290
-
-
Foster, P.G.1
Hickey, D.A.2
-
14
-
-
0031942895
-
Animal adaptations for tolerance and exploitation of poisonous sulfide
-
Grieshaber, M. K. 1998. Animal adaptations for tolerance and exploitation of poisonous sulfide. Annu. Rev. Physiol. 60:33-53.
-
(1998)
Annu. Rev. Physiol.
, vol.60
, pp. 33-53
-
-
Grieshaber, M.K.1
-
16
-
-
0035960882
-
Unique phylogenetic relationship of glucokinase and glucosephosphate isomerase of the amitochondriate eukaryotes Giardia intestinalis, Spironucleus barkhanus and Trichomonas vaginalis
-
Henze, K., D. S. Horner, S. Suguri, D. V. Moore, L. B. Sánchez, M. Müller, and T. M. Embley. 2001. Unique phylogenetic relationship of glucokinase and glucosephosphate isomerase of the amitochondriate eukaryotes Giardia intestinalis, Spironucleus barkhanus and Trichomonas vaginalis. Gene 281:123-131.
-
(2001)
Gene
, vol.281
, pp. 123-131
-
-
Henze, K.1
Horner, D.S.2
Suguri, S.3
Moore, D.V.4
Sánchez, L.B.5
Müller, M.6
Embley, T.M.7
-
17
-
-
0030802495
-
Widespread and ancient distribution of a noncanonical genetic code in diplomonads
-
Keeling, P. J., and W. F. Doolittle. 1997. Widespread and ancient distribution of a noncanonical genetic code in diplomonads. Mol. Biol. Evol. 14:895-901.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 895-901
-
-
Keeling, P.J.1
Doolittle, W.F.2
-
18
-
-
0027945387
-
Sulfide dehydrogenase from the hyperthermophilic archaeon Pyrococcus furiosus: A new multifunctional enzyme involved in the reduction of elemental sulfur
-
Ma, K., and M. W. W. Adams. 1994. Sulfide dehydrogenase from the hyperthermophilic archaeon Pyrococcus furiosus: a new multifunctional enzyme involved in the reduction of elemental sulfur. J. Bacteriol. 176:6509-6517.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 6509-6517
-
-
Ma, K.1
Adams, M.W.W.2
-
19
-
-
0004553333
-
The Giardia genome project database
-
McArthur, A. G., H. G. Morrison, J. E. Nixon, N. Q. Passamaneck, U. Kim, G. Hinkle, M. K. Crocker, M. E. Holder, R. Farr, C. I. Reich, G. E. Olsen, S. B. Aley, R. D. Adam, F. D. Gillin, and M. L. Sogin. 2000. The Giardia genome project database. FEMS Microbiol. Lett. 189:271-273.
-
(2000)
FEMS Microbiol. Lett.
, vol.189
, pp. 271-273
-
-
McArthur, A.G.1
Morrison, H.G.2
Nixon, J.E.3
Passamaneck, N.Q.4
Kim, U.5
Hinkle, G.6
Crocker, M.K.7
Holder, M.E.8
Farr, R.9
Reich, C.I.10
Olsen, G.E.11
Aley, S.B.12
Adam, R.D.13
Gillin, F.D.14
Sogin, M.L.15
-
20
-
-
0033609333
-
Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima
-
Nelson, K. E., R. A. Clayton, S. R. Gill, M. L. Gwinn, R. J. Dodson, D. H. Haft, E. K. Hickey, J. D. Peterson, W. C. Nelson, K. A. Ketchum, L. McDonald, T. R. Utterback, J. A. Malek, K. D. Linher, M. M. Garrett, A. M. Stewart, M. D. Cotton, M. S. Pratt, C. A. Phillips, D. Richardson, J. Heidelberg, G. G. Sutton, R. D. Fleishmann, J. A. Eisen, O. White, S. L. Salzberg, H. O. Smith, J. C. Venter, and C. M. Fraser. 1999. Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima. Nature 399:323-329.
-
(1999)
Nature
, vol.399
, pp. 323-329
-
-
Nelson, K.E.1
Clayton, R.A.2
Gill, S.R.3
Gwinn, M.L.4
Dodson, R.J.5
Haft, D.H.6
Hickey, E.K.7
Peterson, J.D.8
Nelson, W.C.9
Ketchum, K.A.10
McDonald, L.11
Utterback, T.R.12
Malek, J.A.13
Linher, K.D.14
Garrett, M.M.15
Stewart, A.M.16
Cotton, M.D.17
Pratt, M.S.18
Phillips, C.A.19
Richardson, D.20
Heidelberg, J.21
Sutton, G.G.22
Fleishmann, R.D.23
Eisen, J.A.24
White, O.25
Salzberg, S.L.26
Smith, H.O.27
Venter, J.C.28
Fraser, C.M.29
more..
-
21
-
-
0035106010
-
Phylogenetic analyses of two "archaeal" genes in Thermotoga maritima reveal multiple transfers between Archaea and Bacteria
-
Nesbø, C. L., S. L'Haridon, K. O. Stetter, and W. F. Doolittle. 2001. Phylogenetic analyses of two "archaeal" genes in Thermotoga maritima reveal multiple transfers between Archaea and Bacteria. Mol. Biol. Evol. 18:362-375.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 362-375
-
-
Nesbø, C.L.1
L'Haridon, S.2
Stetter, K.O.3
Doolittle, W.F.4
-
22
-
-
0034682335
-
Lateral gene transfer and the nature of bacterial innovation
-
Ochmau, H., J. G. Lawrence, and E. A. Groisman. 2000. Lateral gene transfer and the nature of bacterial innovation. Nature 405:299-304.
-
(2000)
Nature
, vol.405
, pp. 299-304
-
-
Ochmau, H.1
Lawrence, J.G.2
Groisman, E.A.3
-
23
-
-
0035827328
-
Microbial genes in the human genome: Lateral transfer or gene loss?
-
Salzberg, S. L., O. White, J. Peterson, and J. A. Eisen. 2001. Microbial genes in the human genome: lateral transfer or gene loss? Science 292:1903-1906.
-
(2001)
Science
, vol.292
, pp. 1903-1906
-
-
Salzberg, S.L.1
White, O.2
Peterson, J.3
Eisen, J.A.4
-
24
-
-
0035927649
-
Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates
-
Stanhope, M. J., A. Lupas, M. J. Italia, K. K. Koretke, C. Volker, and J. R. Brown. 2001. Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates. Nature 411:940-944.
-
(2001)
Nature
, vol.411
, pp. 940-944
-
-
Stanhope, M.J.1
Lupas, A.2
Italia, M.J.3
Koretke, K.K.4
Volker, C.5
Brown, J.R.6
-
25
-
-
0030930788
-
Ultrastructure of Spironucleus barkhanus n. sp. (Diplomonadida: Hexamitidae) from grayling Thymallus thymallus (L.) (Salmonidae) and Atlantic salmon Salmo salar L. (Salmonidae)
-
Sterud, E., T. A. Mo, and T. T. Poppe. 1997. Ultrastructure of Spironucleus barkhanus n. sp. (Diplomonadida: Hexamitidae) from grayling Thymallus thymallus (L.) (Salmonidae) and Atlantic salmon Salmo salar L. (Salmonidae). J. Eukaryot. Microbiol. 44:399-407.
-
(1997)
J. Eukaryot. Microbiol.
, vol.44
, pp. 399-407
-
-
Sterud, E.1
Mo, T.A.2
Poppe, T.T.3
-
26
-
-
0029836454
-
Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies
-
Strimmer, K., and A. von Haeseler. 1996. Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13:964-969.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 964-969
-
-
Strimmer, K.1
Von Haeseler, A.2
-
27
-
-
0034945935
-
Archaebacterial relationships of the phosphoenolpyruvate carboxykinase gene reveal mosaicism of Giardia intestinalis core metabolism
-
Suguri, S., K. Henze, L. B. Sánchez, D. V. Moore, and M. Müller. 2001. Archaebacterial relationships of the phosphoenolpyruvate carboxykinase gene reveal mosaicism of Giardia intestinalis core metabolism. J. Eukaryot. Microbiol. 48:493-497.
-
(2001)
J. Eukaryot. Microbiol.
, vol.48
, pp. 493-497
-
-
Suguri, S.1
Henze, K.2
Sánchez, L.B.3
Moore, D.V.4
Müller, M.5
-
28
-
-
0032951727
-
Glutamate synthase: A complex iron-sulfur flavoprotein
-
Vanoni, M. A., and B. Curti. 1999. Glutamate synthase: a complex iron-sulfur flavoprotein. Cell. Mol. Life Sci. 55:617-638.
-
(1999)
Cell. Mol. Life Sci.
, vol.55
, pp. 617-638
-
-
Vanoni, M.A.1
Curti, B.2
-
29
-
-
0035085816
-
Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context
-
Wolf, Y. I., I. B. Rogozin, A. S. Kondrashov, and E. V. Koonin. 2001. Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. Genome Res. 11:356-372.
-
(2001)
Genome Res.
, vol.11
, pp. 356-372
-
-
Wolf, Y.I.1
Rogozin, I.B.2
Kondrashov, A.S.3
Koonin, E.V.4
|