Phylogenetic analyses of two "archaeal" genes in Thermotoga maritima reveal multiple transfers between Archaea and Bacteria

Molecular Biology and Evolution

Volumn 18, Issue 3, 2001, Pages 362-375

  Nesbø, Camilla L ^a   L'Haridon, Stéphane ^b   Stetter, Karl O ^c   Ford Doolittle, W ^a  

^a DALHOUSIE UNIVERSITY   (Canada)

^b UNIVERSITÉ DE BRETAGNE OCCIDENTALE   (France)

^c UNIVERSITY OF REGENSBURG   (Germany)

Author keywords

Glutamate synthase; Lateral gene transfer; Myo inositol 1P synthase; Phylogeny; Thermotoga maritima

Indexed keywords

GLUTAMATE SYNTHASE; MYOINOSITOL 1 PHOSPHATE SYNTHASE;

AMINO ACID SEQUENCE; ARTICLE; GENE AMPLIFICATION; GENE SEQUENCE; GENE TRANSFER; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; THERMOTOGA MARITIMA;

ACTINOBACTERIA (CLASS); AQUIFEX AEOLICUS; ARCHAEA; BACTERIA (MICROORGANISMS); CLOSTRIDIUM DIFFICILE; DEHALOCOCCOIDES ETHENOGENES; LANGAT VIRUS; POSIBACTERIA; PROKARYOTA; SINORHIZOBIUM MELILOTI; THERMOTOGA; THERMOTOGA MARITIMA; THERMOTOGALES;

EID: 0035106010     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a003812     Document Type: Article

References (60)

1. MOLPHY version 2.3: Programs for molecular phylogenetics based on maximum likelihood
2. Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles
3. Identification of the INO1 gene of Mycobacterium tuberculosis H37Rv reveals a novel class of inositol-1-phosphate synthase enzyme
4. Complex evolution of the inositol-1-phosphat synthase gene among archaea and eubacteria
5. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
6. A new sulfur-reducing, extremely thermophilic eubacterium from a submarine thermal vent
7. The mycobacterial cell wall: Biosynthesis of arabinogalactan and lipoarabinomannan
8. Phylogenetic depth of bacterial genera Aquifex and Thermotoga inferred from analysis of ribosomal protein, elongation factor and RNA polymerase subunit sequences
9. Evolutionary relationships of bacterial and archaeal glutamine synthetase genes
10. Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
11. Comparison of plasmid DNA topology among mesophilic and thermophilic eubacteria and archaebacteria
12. Biosynthesis of Di-myo-inositol-1,1′-phosphate, a novel osmolyte in hyperthermophilic archaea
13. Occurrence and role of di-myo-inositol-1-1′ phosphate in Methanococcus igneus
14. Isolation of three species of Geotoga and Petrotoga: Two new genera, representing an new lineage in the bacterial line of descent distantly related to the "Thermotogales"
15. Lateral genomics
16. Phylogenetic classification and the universal tree
17. Estimating the relative contributions of mutation and recombination to clonal diversification: A comparison between Neisseria meningitidis and Streptococcus pneumoniae
18. Pyrococcus furiosus sp. nov. represents a novel genus of marine heterotrophic archaebacteria growing optimally at 100 C
19. Whole genome-based phylogenetic analysis of free-living microorganisms
20. Reverse gyrase from hyperthermophiles: Probable transfer of a thermoadaptation trait from Archaea to Bacteria
21. Genetic diversity and mosaicism at the por locus of Neisseria gonorrhoeae
22. Inferring phylogenies from DNA sequences of unequal base compositions
23. Discontinuous occurrence of the hsp70 (dnaK) gene among Archaea and sequence features of HSP70 suggest a novel outlook on phylogenies inferred from this protein
24. Characterization of a defined 2,3,5,6-tetrachlorobiphenyl-ortho-dechlorinating microbial community by comparative sequence analysis of genes coding for 16S rRNA
25. The order thermotogales
26. Horizontal gene transfer among genomes: The complexity hypothesis
27. Thermotoga neapolitana sp. nov. of the extremely thermophilic, eubacterial genus Thermotoga
28. Thermotoga subterranea sp. nov., a new thermophilic bacterium isolated from a continental oil reservoir
29. Gene cloning, sequencing and enzymatic properties of glutamate synthase from the hyperthermophilic archaeon Pyrococcus sp. KOD1
30. Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3
31. The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
32. RNA polymerase of Aquifex pyrophilus: Implications for the evolution of the bacterial rpoBC operon and extremely thermophilic bacteria
33. Glutamate dehydrogenase from the hyperthermophilic bacterium Thermotoga maritima: Molecular characterization and phylogenetic implications
34. Archaeal and bacterial hyperthermophiles: Horizontal gene exchange or common ancestry?
35. Gene transfer, speciation, and the evolution of bacterial genomes
36. Molecular archaeology of the Escherichia coli genome
37. Petrotoga mobilis sp. nov., from a North Sea oil-production well
38. Recovering evolutionary trees under a more realistic model of sequence evolution
39. Thermotoga heats up lateral gene transfer
40. Molecular evolution and mosaic structure of alpha, beta, and gamma intimins of pathogenic Escherichia coli
41. Osmoadaptation in archaea
42. Mosaic bacterial chromosomes: A challenge en route to a tree of genomes
43. New compatible solutes related to Di-myo-inositol-phosphate in members of the order Thermotogales
44. Organic soultes in hyperthermophilic archaea
45. Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene
46. Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima
47. Fervidobacterium nodosum gen. nov. and spec. nov., a new chemoorganotrophic, caldoactive, anaerobic bacterium
48. MODELTEST: Testing the model of DNA substitution
49. Sequencing and expression of additional xylanase genes from the hyperthermophile Thermotoga maritima FjSS3B.1
50. Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: Functional analysis and comparative genomics
51. Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
52. Glutamate synthase and nitrogen assimilation
53. The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
54. Phylogenetic depth of Thermotoga maritima inferred from analysis of the fus gene: Amino acid sequence of elongation factor G and organization of the Thermotoga str operon
55. The European Small Subunit Ribosomal RNA database
56. Glutamate synthase: A complex iron-sulfur flavoprotein
57. Enzymatic synthesis of aminocyclitol moieties of aminoglycoside antibiotics from inositol by Streptomyces spp.: Detection of glutamine-aminocyclitol aminotransferase and diaminocyclitol aminotransferase activities in a spectinomycin producer