An archaeal genomic signature

Proceedings of the National Academy of Sciences of the United States of America

Volumn 97, Issue 7, 2000, Pages 3304-3308

  Graham, David E ^a   Overbeek, Ross ^b,c   Olsen, Gary J ^a   Woese, Carl R ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b ARGONNE NATIONAL LABORATORY   (United States)

^c Integrated Genomics   (United States)

Author keywords

Archaea; Biological classification; Protein clusters; Taxonomic domains

Indexed keywords

ARCHAEBACTERIUM; ARTICLE; EVOLUTION; GENE CLUSTER; GENE TRANSFER; GENOME; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DOMAIN; SEQUENCE HOMOLOGY;

ARCHAEA; BACTERIA (MICROORGANISMS); EUKARYOTA; EURYARCHAEOTA; PROKARYOTA;

EID: 0034724342     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.97.7.3304     Document Type: Article

References (30)

1. Darwin, C. (1843) Letter to George Robert Waterhouse (Cambridge Univ. Press, Cambridge, U.K.).
2. Woese, C. R. (1994) Microbiol. Rev. 58, 1-9.
3. Zuckerkandl, E. & Pauling, L. (1965) J. Theor. Biol. 8, 357-366.
4. Woese, C. R. (1987) Microbiol. Rev. 51, 221-271.
5. Woese, C. R. & Fox, G. E. (1977) Proc. Natl. Acad. Sci. USA 74, 5088-5090.
6. Bock, A. & Kandler, O. (1985) in The Bacteria (Academic New York), Vol. VIII, pp. 525-544.
7. Gupta, R. & Woese, C. R. (1980) Curr. Microbiol. 4, 245-249.
8. Langworthy, T. A. (1985) in The Bacteria (Academic, New York), Vol. VIII, pp. 459-497.
9. Kandler, O. & König, H. (1993) in The Biochemistry of Archaea (Archaebacteria), eds. Kates, M., Kushner, D. J. & Matheson, A. T. (Elsevier, Amsterdam), pp. 223-259.
10. DiMarco, A. A., Bobik, T. A. & Wolfe, R. S. (1990) Annu. Rev. Biochem, 59, 355-394.
11. Zillig, W., Stetter, K. O., Schnabel, R. & Thomm, M. (1985) in The Bacteria: A Treatise on Structure and Function, ed. Gunsalus, I. C. (Academic New York), Vol. 8, pp. 499-524.
12. Snel, B., Bork, P. & Huynen, M. A. (1999) Nat. Genet. 21, 108-110.
13. Gaasterland, T. & Ragan, M. A. (1998) Microbiol. Comp. Genomics 3, 177-192.
14. Bult, C. J., White, O., Olsen, G. J., Zhou, L., Fleischmann, R. D., Sutton, G. G., Blake, J. A., FitzGerald, L. M., Clayton, R. A., Gocayne, J. D., et al. (1996) Science 273, 1017-1140.
15. Smith, D. R., Doucette-Stamm, L. A., Deloughery, C., Lee, H., Dubois, J., Aldredge, T., Bashirzadeh, R., Blakely, D., Cook, R., Gilbert, K., et al. (1997) J. Bacteriol. 179, 7135-7155.
16. Klenk, H.-P., Clayton, R. A., Tomb, J. F., White, O., Nelson, K. E., Ketchum, K. A., Dodson, R. J., Gwinn, M., Hickey, E. K., Peterson, J. D., et al. (1997) Nature (London) 390, 364-370.
17. Kawarabayasi, Y., Sawada, M., Horikawa, H., Haikawa, Y., Hino, Y., Yamamoto, S., Sekine, M., Baba, S., Kosugi, H., Hosoyama, A., et al. (1998) DNA Res. 5, 55-76.
18. Kawarabayasi, Y., Hino, Y., Horikawa, H., Yamazaki, S., Haikawa, Y., Jin-no, K., Takahashi, M., Sekine, M., Baba, S., Ankai, A., et al.(1999) DNA Res. 6, 83-101, 145-152.
19. Badger, J. H. & Olsen, G. J. (1998) Mol. Biol. Evol. 16, 512-524.
20. Pearson, W. R. & Lipman, D. J. (1988) Proc. Natl. Acad. Sci. USA 85, 2444-2448.
21. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990) J. Mol. Biol. 215, 403-410.
22. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994) Nucleic Acids Res. 22, 4673-4680.
23. Pearson, W. R. (1995) Protein Sci. 4, 1145-1160.
24. Collins, J. F., Coulson, A. F. & Lyall, A. (1988) Comput. Appl. Bioscience 4, 67-71.
25. Chistoserdova, L., Vorholt, J. A., Thauer, R. K. & Lidstrom, M. E. (1998) Science 281, 99-102.
26. Pereira, S. L., Grayling, R. A., Lurz, R. & Reeve, J. N. (1997) Proc. Natl. Acad. Sci. USA 94, 12633-12637.
27. Suckow, J. M. & Suzuki, M. (1999) Proc. Jpn. Acad. 75(B), 10-15.
28. Hoaki, T., Nishijima, M., Kato, M., Adachi, K., Mizobuchi, S., Hanzawa, N. & Maruyama, T. (1994) Appl. Environ. Microbiol. 60, 2898-2904.
29. Lawrence, J. G. & Ochman, H. (1997) J. Mol. Evol. 44, 383-397.
30. Woese, C. (1998) Proc. Natl. Acad. Sci. USA 95, 6854-6859