Suppressive subtractive hybridization detects extensive genomic diversity in Thermotoga maritima

Journal of Bacteriology

Volumn 184, Issue 16, 2002, Pages 4475-4488

  Nesbø, Camilla L ^a   Nelson, Karen E ^a   Doolittle, W Ford ^a  

^a DALHOUSIE UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; BACTERIAL DNA; BACTERIAL POLYSACCHARIDE; RIBOSOME RNA;

ARTICLE; BACTERIAL GENOME; CONTROLLED STUDY; DNA HYBRIDIZATION; GENE SEQUENCE; GENE STRUCTURE; GENE TRANSFER; GENETIC CODE; GENETIC VARIABILITY; NONHUMAN; PRIORITY JOURNAL; PROTEIN DEGRADATION; RNA SEQUENCE; SEQUENCE ANALYSIS; SOUTHERN BLOTTING; SPECIES DIFFERENCE; STRAIN DIFFERENCE; THERMOPHILIC BACTERIUM; THERMOTOGA MARITIMA;

ANTIGENS, BACTERIAL; ARCHAEAL PROTEINS; CARBOHYDRATE METABOLISM; CARRIER PROTEINS; GENOME, BACTERIAL; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; THERMOTOGA MARITIMA; VACUOLAR PROTON-TRANSLOCATING ATPASES; VARIATION (GENETICS);

ARCHAEA; BACTERIA (MICROORGANISMS); NEGIBACTERIA; THERMOTOGA; THERMOTOGA MARITIMA; THERMOTOGA SP.; THERMOTOGALES;

EID: 0036335361     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.184.16.4475-4488.2002     Document Type: Article

References (59)

1. PCR-based subtractive hybridization and differences in gene content among strains of Helicobacter pylori
2. Analysis of the genetic diversity of Helicobacter pylori: The tale of two genomes
3. Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces
4. Identification and localization of differences between Escherichia coli and Salmonella typhimurium genomes by suppressive subtractive hybridization
5. Microbial genomes: Dealing with diversity
6. Phylogenetic evidence for horizontal transfer of mutS alleles among naturally occurring Escherichia coli strains
7. Unique chromosomal regions associated with virulence of an avian pathogenic Escherichia coli strain
8. Protocol 12: Purification of plasmids from thermophilic and hyperthermophilic archaea
9. Phylogenetic classification and the universal tree
10. Whole genome comparison of Campylobacter jejuni human isolates using a low-cost microarray reveals extensive genetic diversity
11. Comparative genomics of closely related salmonellae
12. A phylogenomic study of the MutS family of proteins
13. Genomic subtraction identifies Salmonella typhimurium prophages, F-related plasmid sequences, and a novel fimbrial operon, stf, which are absent in Salmonella typhi
14. Evolutionary genomics of pathogenic bacteria
15. Evolutionary genomics of Staphylococcus aureus: Insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemic
16. Keratin degradation by Fervidobacterium pennivorans, a novel thermophilic anaerobic species of the order Thermotogales
17. Genetic diversity and mosaicism at the por locus of Neisseria gonorrhoeae
18. Mosaic genes and mosaic chromosomes: Intra- and interspecies genomic variation of Streptococcus pneumoniae
19. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain, K-12
20. Gene fragments distinguishing an epidemic-associated strain from a virulent prototype strain of Listeria monocytogenes belong to a distinct functional subset of genes and partially cross-hybridize with other Listeria species
21. Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90°C
22. Thermosipho africanus gen. nov. represents a new genus of thermophilic eubacteria within the Thermotogales
23. Fervidobacterium islandicum sp. nov., a new extremely thermophilic eubacterium belonging to the Thermotogales
24. Thermotoga neapolitana sp. nov. of the extremely thermophilic, eubacterial genus Thermotoga
25. Thermotoga subterranea sp. nov., a new thermophilic bacterium isolated from a continental oil reservoir
26. Molecular characterization of Streptococcus pneumoniae type 4, 6B, 8, and 18C capsular polysaccharide gene clusters
27. Comparing genomes within the species Mycobacterium tuberculosis
28. The impact of comparative genomics on our understanding of evolution
29. HIV signature and sequence variation analysis
30. Identification of genes present specifically in a virulent strain of Klebsiella pneumoniae
31. Gene transfer is a major factor in bacterial evolution
32. Genetic variation of dTDP-L-rhamnose pathway genes in Salmonella enterica
33. Bacterial phylogeny based on comparative sequence analysis
34. Drug targeting Mycobacterium tuberculosis cell wall synthesis: Genetics of dTDP-rhamnose synthetic enzymes and development of a microtiter plate-based screen for inhibitors of conversion of dTDP-glucose to dTDP-rhamnose
35. Horizontal genetical exchange in the evolution of Neisseria meningitidis outer membrane proteins
36. Complete genome sequence of Salmonella enterica serovar Typhimurium LT2
37. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
38. Evidence for lateral gene transfer between archaea and bacteria from genome sequence of Thermotoga maritima
39. Phylogenetic analyses of two "archaeal" genes in Thermotoga maritima reveal multiple transfers between archaea and bacteria
40. Evolutionary dynamics of full genome content in Escherichia coli
41. Horizontal transfer of archaeal genes into the Deinococcaceae: Detection by molecular and computer-based approaches
42. Fervidobacterium nodosum gen. nov. and spec. nov., a new chemoorganotrophic, caldoactive, anaerobic bacterium
43. Microbial genome analyses: Comparative transport capabilities in eighteen prokaryotes
44. Genome sequence of enterohemorrhagic Escherichia coli O157:H7
45. Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39
46. Finding drug targets in microbial genomes
47. Sequencing and expression of additional xylanase genes from the hyperthermophile Thermotoga maritima FjSS3B.1
48. A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains
49. DNA Sequence analysis of the genetic structure and evolution of Salmonella enterica
50. Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks
51. Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
52. Thermotoga petrophila sp. nov. and Thermotoga naphthophila sp. nov., two hyperthermophilic bacteria from the Kubiki oil reservoir in Niigata, Japan
53. Acquisition of the rfb-gnd cluster in evolution of Escherichia coli O55 and O157
54. Complete genome sequence of a virulent isolate of Streptococcus pneumoniae
55. Complete genome sequence of Neisseria meningitidis serogroup B strain MC58
56. MutS2 family protein from Pyrococcus furiosus
57. Thermotoga thermarum sp. nov. and Thermotoga neapolitana occurring in African continental solfataric springs