The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny

Proceedings of the National Academy of Sciences of the United States of America

Volumn 93, Issue 15, 1996, Pages 7749-7754

  Baldauf, Sandra L ^a   Palmer, Jeffrey D ^b   Doolittle, W Ford ^a  

^a DALHOUSIE UNIVERSITY   (Canada)

^b INDIANA UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ELONGATION FACTOR; PROTEIN; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATASE;

ARTICLE; CRYSTALLOGRAPHY; ENZYME ACTIVE SITE; EUKARYOTE; GENE; GENE DUPLICATION; MAXIMUM LIKELIHOOD METHOD; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; PROTEIN SYNTHESIS;

ADENOSINE TRIPHOSPHATASES; AMINO ACID SEQUENCE; ANIMALS; BACTERIA; CONSENSUS SEQUENCE; EVOLUTION, MOLECULAR; HUMANS; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PEPTIDE ELONGATION FACTOR G; PEPTIDE ELONGATION FACTOR TU; PEPTIDE ELONGATION FACTORS; PHYLOGENY; PLANTS; SEQUENCE HOMOLOGY, AMINO ACID; VARIATION (GENETICS);

ARCHAEA; BACTERIA (MICROORGANISMS); CRENARCHAEOTA; EUKARYOTA;

EID: 0029819318     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.93.15.7749     Document Type: Article

References (57)

1. Gogarten, J. P., Kibak, H., Dittrich, P., Taiz, L., Bowman, E. J., Bowman, B. J., Manolson, M. F., Poole, R. J., Date, T., Oshima, T., Konishi, J., Denda, K. & Yoshida, M. (1989) Proc. Natl. Acad. Sci. USA 86, 6661-6665.
2. Iwabe, N., Kuma, K.-I., Hasegawa, M., Osawa, S. & Miyata, T. (1989) Proc. Natl. Acad. Sci. USA 86, 9355-9359.
3. Hilario, E. & Gogarten, J. P. (1993) Biosystems 31, 111-119.
4. Forterre, P., Benachenhou-Lahfa, N., Confalonieri, F., Duguet, M., Elie, C. & Labedan, B. (1993) BioSystems 28, 15-32.
5. Olsen, G. J., Woese, C. R. & Overbeek, R. (1994) J. Bacteriol. 176, 1-6.
6. Brown, J. R. & Doolittle, W. F. (1995) Proc. Natl. Acad. Sci. USA 92, 2441-2445.
7. Hori, H. & Osawa, S. (1987) Mol. Biol. Evol. 4, 445-472.
8. Klenk, H.-P., Palm, P. & Zillig, W. (1994) Syst. Appl. Microbiol. 16, 638-647.
9. Creti, R., Ceccarelli, E., Bocchetta, M., Sanangelantoni, A. M., Tiboni, O., Palm, P. & Cammarano, P. (1994) Proc. Natl Acad. Sci. USA 91, 3255-3259.
10. Lake, J. A., Henderson, E., Clark, M. W., Scheinman, A. & Oakes, M. I. (1986) Syst. Appl. Microbiol. 7, 131-136.
11. Lake, J. A. (1988) Nature (London) 331, 184-186.
12. Gouy, M. & Li, W.-H. (1989) Nature (London) 339, 145-147.
13. Stoffler, G. & Stoffler-Mailicke, M. (1986) Syst. Appl. Microbiol. 7, 123-130.
14. Rivera, M. C. & Lake, J. A. (1992) Science 257, 74-76.
15. Devereux, J., Haeberli, P. & Smithies, O. (1984) Nucleic Acids Res. 12, 387-395.
16. Dayhoff, M. O., Eck, R. V. & Park, D. M. (1972) Atlas of Protein Sequence and Structure (Nat. Biomed. Res. Found., Silver Spring, MD).
17. Czworkowski, J., Wang, J., Steitz, T. A. & Moore, P. B. (1994) EMBO J. 13, 3661-3668.
18. Clark, B. F. C., Kjeldgaard, M., la Cour, T. F. M., Thirup, S. & Nyborg, J. (1990) Biochim. Biophys. Acta 1050, 203-208.
19. Ævarsson, R. (1995) J. Mol. Evol. 41, 1096-1104.
20. Swofford, D. L. (1993) PAUP: Phylogenetic Analysis Using Parsimony (Illinois Natural History Survey, Champaign, IL), Version 3.1.
21. Maddison, W. P. (1993) Syst. Biol. 42, 576-581.
22. Felsenstein, J. (1993) PHYLIP: Phylogeny Inference Package (Department of Genetics, Univ. of Washington, Seattle), Version 3.5c.
23. Kumar, S., Tamura, K. & Nei, M. (1993) MEGA: Molecular Evolutionary Genetics Analysis (The Pennsylvania State University, University Park, PA), Version 1.0.
24. Nei, M., Chakraborty, R. & Fuerst, P. A. (1976) Proc. Natl. Acad. Sci. USA 73, 4164-4168.
25. Adachi, J. & Hasegawa, M. (1992) MOLPHY: Programs for Molecular Phylogenetics - PROTML: Maximum Likelihood Inference of Protein Phylogeny (Institute of Statistical Mathematics, Tokyo), Vol. 1.
26. Jones, D. T., Taylor, W. R. & Thornton, J. M. (1992) Comput. Appl. Biosci. 8, 275-282.
27. Yang, Z. (1995) PAML: Phylogenetic Analysis by Maximum Likelihood (Institute of Molecular Evolution and Genetics, The Pennsylvania State University, University Park, PA), Version 1.1.
28. Bourne, H. R., Sanders, D. A. & McCormick, F. (1991) Nature (London) 349, 117-127.
29. Felsenstein, J. (1988) Annu. Rev. Genet. 22, 521-565.
30. Matheson, A. T., Auer, J., Ramirez, C. & Bock, A. (1990) in The Ribosome Structure, Function and Evolution, ed. Hill, W. E. (Am. Soc. Microbiol., Washington, DC), pp. 617-633.
31. Baldauf, S. L. (1990) Ph. D. thesis (Univ. of Michigan, Ann Arbor, MI).
32. Iwabe, N., Kuma, K.-i., Kishino, H., Hasegawa, M. & Miyata, T. (1991) J. Mol. Evol. 32, 70-78.
33. Klenk, H.-P., Baldauf, S. L., Keeling, P. J., Doolittle, W. F. & Zillig, W. (in press) Syst. Appl. Microbiol.
34. Clark, A. J. & Sandier, S. J. (1994) Crit. Rev. Microbiol. 20, 125-142.
35. Baumann, P., Qureshi, S. A. & Jackson, S. P. (1995) Trends Genet. 11, 279-283.
36. Kaine, B. P. (1989) J. Mol. Evol. 23, 248-254.
37. Langer, D. & Zillig, W. (1993) Nucleic Acids Res. 21, 2251.
38. Reiter, W. D., Hudepohl, U. & Zillig, W. (1990) Proc. Natl. Acad. Sci. USA 87, 9509-9513.
39. Potter, S., Durovic, P. & Dennis, P. P. (1995) Science 268, 1056-1060.
40. Forterre, P., Bergerat, A., Gadelle, D., Elie, C., Gottspeich, F., Confalonieri, F., Duguet, M., Holmes, M. & Dyall-Smith, M. (1994) Syst. Appl. Microbiol. 16, 746-758.
41. Leffers, H., Kjems, J., Ostergaard, L., Larson, N. & Garrett, R. A. (1987) J. Mol. Biol. 195, 43-61.
42. Brown, J. R., Masuchi, Y., Robb, F. T. & Doolittle, W. F. (1994) J. Mol. Evol. 38, 566-576.
43. Benachenhou-Lahfa, N., Forterre, P. & Labedan, B. (1993) J. Mol. Evol. 36, 335-346.
44. Gupta, R. S. & Golding G. B. (1993) J. Mol. Evol. 37, 573-582.
45. Doolittle, R. F., Feng, D. F., Anderson, K. L. & Alberro, M. R. (1990) J. Mol. Evol. 31, 383-388.
46. Chien, Y.-T. & Zinder, S. H. (1994) J. Bacteriol. 176, 6590-6598.
47. Martin, W., Brinkmann, H., Savonna, C. & Cerff, R. (1993)Proc. Natl. Acad. Sci. USA 90, 8692-8696.
48. Kuhner, M. K. & Felsenstein, J. (1994) Mol. Biol. Evol. 11, 459-468.
49. Tateno, Y., Takezaki, N. & Nei, M. (1994) Mol. Biol. Evol. 11, 261-277.
50. Felsenstein, J. (1978) Syst. Zool. 27, 401-409.
51. Barnes, S., Delwiche, C. F., Palmer, J. D. & Pace, N. R. (1996) Proc. Natl. Acad. Sci. USA, in press.
52. De Rijk, P., Van de Peer, Y., Van den Broeck, I. & De Wachter, R. (1995) J. Mol. Evol. 41, 366-375.
53. Gambacorta, A., Trincone, A., Nicolaus, B., Lama, L. & De Rosa, M. (1994) Syst. Appl. Microbiol. 16, 518-527.
54. Wolters, J. & Erdmann, V. A. (1989) Can. J. Microbiol. 35, 43-51.
55. Lake, J. A. (1994) Proc. Natl. Acad. Sci. USA 91, 1455-1459.
56. Garrett, R. A., Dalgaard, J., Larsen, N., Kjems, J. & Mankin, A. S. (1991) Trends Biochem. Sci. 16, 22-27.
57. Hashimoto, T., & Hasegawa, M. (1996) Adv. Biophys. 32, 73-120.