Nonplanar dna base pairs

Journal of Biomolecular Structure and Dynamics

Volumn 13, Issue 5, 1996, Pages 827-833

  Šponer, Jiří ^a,b,c   Florián, Jan ^b   Hobza, Pavel ^a   Leszczynski, Jerzy ^b  

^a J HEYROVSKÝ INSTITUTE OF PHYSICAL CHEMISTRY   (Czech Republic)

^b JACKSON STATE UNIVERSITY   (United States)

^c INSTITUTE OF BIOPHYSICS   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

DNA BASE;

ARTICLE; BASE MISPAIRING; BASE PAIRING; DNA CONFORMATION; HYDROGEN BOND; MOLECULAR INTERACTION; MOLECULAR STABILITY; PRIORITY JOURNAL;

EID: 0029869883     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.1996.10508895     Document Type: Article

References (48)

1. Larsen, N. W., Hansen, E. L., and Nicolaisen, F. M., 1976. Chem. Phys. Lett., 43:584–586.
2. Kydd, R. A., and Mills, I. M., 1972. J. Mol. Spectrosc., 42:320–326.
3. Kydd, R. A., and Krueger, P. J., 1977. Chem. Phys. Lett., 49:539–543.
4. Lister, D. G., Tyller, J. K., Hog, J. H., and Larsen, N. W., 1974. J. Mol. Struct., 23:253–264.
5. Quack, M., and Stockburger, M., 1972. J. Mol. Spectrosc., 43:87–116.
6. Christen, D., Norbury, D., Lister, D. G., and Palmiery, P., 1975. J. Chem. Soc. Faraday Trans., 2:438–446.
7. Brand, J. C.D., Williams, D. R., and Cook, T. J., 1966. J. Mol. Spectrosc., 20:359–380.
8. McMullan, R. K., Benci, P., and Craven, B. M., 1980. Acta Crystal. B, 36:1424–1430.
9. Hobza, P., and Zahradnik, R., 1988. Intermolecular complexes. The role of van der Waals systems in physical chemistry and in the biodisciplines Elsevier, Amsterdam
10. Hobza, P., and Zahradnik, R., 1988. Chem. Rev., 88:871–897.
11. Hobza, P., Selzle, H. L., and Schlag, E. W., 1994. Chem. Rev., 94:1767–1787.
12. Niu, Z., and Boggs, J. E., 1984. J. Mol. Struct. (THEOCHEM), 109:381–389.
13. Wang, Y., Saebo, S., and Pittman, C. U., Jr. 1993. J. Mol. Struct. (Theochem), 281:91–98.
14. Gould, I. R., and Hillier, I. H., 1989. Chem. Phys. Lett., 767:185–189.
15. Riggs, N. V., 1991. Chem.Phys.Lett., 177:447–450.
16. Leszczynski, J., 1992. Int. J. Quantum Chem. Quantum Biol. Symp., 19:43–55.
17. Ha, T. K., and Gunthard, H. H., 1993. J. Mol. Struct. (Theochem), 300:619–635.
18. Šponer, J., and Hobza, P., 1994. J. Mol. Struct. (Theochem), 304:35–42.
19. Šponer, J., and Hobza, P., J. Phys. Chem., 983161–3164. (J994)
20. Šponer, J., Hobza, P., Bludský, O., Leszczynski, J., and Spirko, V., in preparation
21. Florián, J., and Leszczynski, J., 1995. J. Biomol. Struct. Dyn., 12:1055–1062.
22. Hobza, P., Šponer, J., and Polá šek, M., 1995. J. Am. Chem. Soc., 117:792–798.
23. Šponer, J., Leszczynski, J., and Hobza, J., 1996. Phys. Chem., 100:1965–1974. All possible hydrogen-bonded DNA base pairs consisting of neutral major tautomers of adenine, cytosine, guanine and thymine are characterized
24. Šponer, J., Leszczynski, J., Vetterl, V., and Hobza, P., 1996. J. Biomol. Struct. Dyn., 13:695–706.
25. Florián, J., and Leszczynski, J., 1996. J. Am. Chem. Soc., 118:3010–3017.
26. Gould, I. R., and Kollman, P. A., 1994. J. Am. Chem. Soc., 116:2493–2499.
27. Frisch, M. J., Trucks, G. W., Head-Gordon, M., Gill, P. M.W., Wong, M. W., Foresman, J. B., Johnson, B. G., Schlegel, H. B., Rob, M. A., Replogle, E. S., Gomperts, R., Andres, J. L., Raghavachari, K., Binkley, J. S., Gonzales, C., Martin, R. L., Fox, D. J., Defrees, D. J., Baker, J., Stewart, J. J.P., and Pople, J. A., 1992. GAUSSIAN 92 Pittsburgh, PA.:Gaussian Ine.
28. Prive, G. G., Heinemann, U., Chandrasegaran, S., Kan, L.-S., Kopka, M. L., and Dickerson, R. E., 1987. Science, 38:498–504.
29. Carbonnaux, C., van der Marel, G. A., van Boom, J. H., Guschlbauer, W., and Fazakerley, G. V., 1991. Biochemistry, 30:5449–5458.
30. Boulard, Y., Cognet, J. A.H., Gabarro-Arpa, J., Le Bret, M., Carbonaux, C., and Fazakerley, G. V., 1995. J. Mol. Biol., 246:194–208.
31. Chou, S.-H., Cheng, J.-W., and Reid, B. R., 1992. J. Mol. Biol., 228:138–155.
32. Ebel, S., Brown, T., and Lane, E., 1994. Eur. J. Biochem., 220:703–715.
33. Katahira, M., Kanagawa, M., Sato, H., Uesugi, S., Fujii, S., Kohno, T., and Maeda, T., 1994. Nucl. Acid. Res., 22:2752–2759.
34. Li, Y., Zon, G., and Wilson, W. D., 1991. Proc. Natl. Acad. Sci. USA, 88:26–30.
35. Maskos, K., Gunn, B. M., LeBlanc, D. A., and Morden, K. M., 1993. Biochemistry, 32:3583–3595.
36. Moore, M. H., Van Meervelt, L., Salisbury, S. A., Lin, P. K.T., and Brown, D. M., 1995. J. Mol. Biol., 251:665–673.
37. Pranata, J., Wierschke, S. C., and Jorgensen, W. L., 1991. J. Am. Chem. Soc., 113:2810–2819.
38. Hobza, P., and Sandorfy, C., 1987. J. Am. Chem. Soc., 109:1302–1307.
39. Šponer, J., and Hobza, P., 1994. J. Am. Chem. Soc., 116:709–714.
40. Ramakrishnan, B., and Sundaralingam, M., 1993. J. Biomol. Struct. Dyn., 11:11–26.
41. Jimsit, Y., and Moras, D., 1995. J. Mol. Biol., 251:629–647.
42. Šponer, J., and Kypr, J., 1994. Int. J. Biol. Macromol., 16:3–6.
43. Šponer, J., and Hobza, P., 1994. J. Biomol. Struct. Dyn., 12:671–680.
44. Rippe, K., Ramsing, M. B., Klement, R., and Jovin, T. M.J., 1991. J. Biomol. Struct. Dyn., 7:1199–1209.
45. Rentzeperis, D., and Marky, L. A., 1993. J. Am. Chem. Soc., 115:1645–1650.
46. Best, G. C., and Dervan, P. B., 1995. J. Am. Chem. Soc., 117:1187–1193.
47. Meier, R. J., Maple, J. R., Hwang, M.-J., and Hagler, A. T., 1995. J. Phys. Chem., 99:5445–5455.
48. Gerber, P. R., and Müller, K., 1995. J. Comput.-Aided. Mol. Design., 9:251–268.