B to A transition of DNA on the nanosecond time scale

Journal of Physical Chemistry

Volumn 100, Issue 7, 1996, Pages 2564-2566

  Yang, Liqiu ^a   Pettitt, B Montgomery ^a  

^a University of Houston   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 33748674257     PISSN: 00223654     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp953080f     Document Type: Article

References (33)

1. Hamilton, L. D. Nature 1968, 218, 633-637.
2. Mohr, S. C.; Sokolov, N. V. H. A.; He, C.; Setlow, P. Proc. Natl. Acad. Sci. USA 1991, 88, 77-81.
3. Becker, M. M.; Wang, Z. J. Biol. Chem. 1989, 264, 4163-4167.
4. Fritzsche, H. Nucleic Acids Res. 1994, 22, 787-791.
5. Ivanov, V. I.; Krylov, D. Y. Meth. Enzymol. 1992, 211, 111-127.
6. Saenger, W. Principles of Nucleic Acid Structure; Springer-Verlag: New York, 1984.
7. Cheatham, T. E., III; Miller, J. L.; Fox, T.; Darden, T. A.; Kollman, P. A. J. Am. Chem. Soc. 1995, 117, 4193-4194.
8. McConnell, K. J.; Nirmala, R.; Young, M. A.: Ravishanker, G.; Beveridge, D. L. J. Am. Chem. Soc. 1994, 116, 4461-4462.
9. York, D. M.; Yang, W.; Lee, H.; Darden, T.; Pedersen, L. J. Am. Chem. Soc. 1995, 117, 5001-5002.
10. Miaskiewicz, K.; Osman, R.; Weinstein, H. J. Am. Chem. Soc. 1993, 115, 1526-1537.
11. Levitt, M. Cold Spring Harbor Symp. Quant. Biol. 1983, 47, 251-262.
12. Kumar, S.; Duan, Y.; Kollman, P. A.; Rosenberg, J. M. J. Biomol. Struct. Dyn. 1994, 12, 487-525.
13. MacKerell, A. D. J. Am. Chem. Soc., submitted.
14. Drew, H. R.; Wing, R. M.; Takano, T.; Broka, C.; Tanaka, S.; Itakura, K.; Dickerson, R. E. Proc. Natl. Acad. Sci. USA 1981, 78, 2179-2183.
15. Brooks, B. R.; Bruccoleri, R. E.; Olafson, B. D.; States, D. J.; Swaminathan, S.; Karplus, M. J. Comput. Chem. 1983, 4, 187-217.
16. Weerasinghe, S.; Smith, P. E.; Mohan, V.; Cheng, Y.-K.; Pettitt, B. M. J. Am. Chem. Soc. 1995, 117, 2147-2158.
17. Allen, M. P.; Tildesley, D. J. Computer Simulation of Liquids; Oxford University: New York, 1987.
18. Smith, P. E.; Pettitt, B. M. J. Chem. Phys. 1991, 95, 8430-8441.
19. Schreiber, H.; Steinhauser, O. Biochemistry 1992, 31, 5856-5860.
20. Dickerson, R. E.; Bansal, M.; Calladine, C. R.; Diekmann, S.; Hunter, W. N.; Kennard, O.; Lavery, R.; Nelson, H. C. M.; Olson, W. K.; Saenger, W.; Shakked, Z.; Sklenar, H.; Soumpasis, D. M.; Tung, C. S.; von Kitzing, E.; Wang, A. H.-J.; Zhurkin, V. B. J. Mol. Biol. 1989, 205, 787-791.
21. Hogan, M. E.; Jardetsky, O. Biochemistry 1980, 19, 3460-3468.
22. Arnott, S.; Fuller, W.; Hodsson, A.; Prutton, I. Nature 1968, 220, 561-564.
23. Rhodes, D.; Klug, A. Cell 1986, 46, 123-132.
24. McCall, M.; Brown, T.; Hunter, W. N.; Kennard, O. Nature 1986, 322, 661-664.
25. Gottesfeld, J. M.; Blanco, J.; Tennant, L. L. Nature 1987, 329, 460-462.
26. Aboul-ela, F.; Varani, G.; Walker, G. T.; Tinoco, I., Jr. Nucleic Acids Res. 1986, 16, 3559-3572.
27. Fairall, L.; Martin, S.; Rhodes, D. EMBO J. 1989, 8, 1809-1817.
28. Peticolas, W. L.; Thomas, G. A.; Wang, Y. J. Mol. Liquids 1989, 41, 367-388.
29. Nerdal, W.; Hare, D. R.; Reid, B. R. Biochemistry 1989, 28, 10008-10021.
30. Pohl, F. M.; Jovin, T. M. J. Mol. Biol. 1972, 67, 375-396.
31. Patel, D. J.; Canuel, L. L.; Pohl, F. M. Proc. Natl. Acad. Sci. USA 1979, 76, 2508-2511.
32. Patel, D. J.; Kozlowski, S. A.; Nordheim, A.; Rich, A. Proc. Natl. Acad. Sci. USA 1982, 79, 1413-1417.
33. QUANTA, Molecular Simulations Inc., release 4.0, 1994.