Hydration of C - H groups in tRNA

Faraday Discussions

Volumn 103, Issue , 1996, Pages 151-173

  Auffinger, Pascal ^a   Louise May, Shirley ^a   Westhof, Eric ^a  

^a INST DE BIOL MOLEC ET CELLULAIRE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON; HYDROGEN; TRANSFER RNA; WATER;

ARTICLE; AUDIOVISUAL EQUIPMENT; CHEMISTRY; CONFORMATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE;

BASE SEQUENCE; CARBON; HYDROGEN; MODELS, STRUCTURAL; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RNA, TRANSFER; WATER;

EID: 0030320856     PISSN: 13596640     EISSN: None     Source Type: Journal    
DOI: 10.1039/FD9960300151     Document Type: Article

References (58)

1. E. Westhof, Annu Rev. Biophys., Biophys Chem., 1988, 17, 125.
2. E. Westhof and D L. Beveridge, in Water Science Reviews 5, ed F. Franks, Cambridge University Press, Cambridge, 1990, pp 24-123.
3. E. Westhof, in Water and Ions in Biomolecular Systems - Advances in Life Science, ed. B. V. Basel, 1990, pp. 11-18.
4. E. Westhof, in Water and Biological Macromolecules, ed. E. Westhof, The MacMillian Press LTD, London, 1993, vol. 17, pp. 227-243.
5. H. M. Berman, Curr. Op. Struct. Biol., 1991, 1, 423.
6. H. M. Berman, Curr. Op. Struct Biol., 1994, 4, 345
7. R. Taylor and O. Kennard, J. Am. Chem. Soc., 1982, 104, 5063.
8. G. R. Desiraju, Acc. Chem. Res., 1991, 24, 290.
9. T. Steiner and W. Saenger, J. Am. Chem. Soc., 1992, 114, 10146.
10. G. A. Leonard, K. McAuley-Hecht, T. Brown and W. N. Hunter, Acta Crystallogr. Sect. D, 1995, 51, 136.
11. Z. S. Derewenda, L. Lee and U. Derewenda, J. Mol. Biol., 1995, 252, 248.
12. U. Koch and P. L. A. Popelier, J. Phys. Chem., 1995, 99, 9747.
13. S. T. Rao and M. Sundaralingam, J. Am. Chem Soc., 1970, 92, 4963.
14. W. Saenger, Principles of Nucleic Acid Structure, Springer Verlag: New York, 1984.
15. J. M. Benevides and G. J. Thomas, Biochemistry, 1988, 27, 3868.
16. G. A. Jeffrey and W. Saenger, Hydrogen Bonding in Biological Structures, Springer Verlag, Berlin, 1991.
17. P. Auffinger, S. Louise-May and E. Westhof, J. Am. Chem. Soc., 1995, 118, 1181.
18. P. Auffinger and E. Westhof, 1996, Biophys. J., in press.
19. T. Steiner and W. Saenger, J. Am. Chem. Soc., 1993, 115, 4540.
20. T. Steiner and W. Saenger, Acta Crystallogr. Sect. D, 1993, 49, 592.
21. T. Steiner, Acta Cryst. D, 1995, 51, 93
22. K. Wüthnch, Acta Crystallogr. Sect. D, 1995, 51, 249.
23. M. Kochoyan and J. L. Leroy, Curr. Op. Struct. Biol., 1995, 5, 329.
24. Y. Wang and J. P. Patel, J. Mol. Biol., 1994, 242, 508.
25. D. H. Kitson, F. Avbelj, J. Moult, D. T. Nguyen, J. E. Mertz, D. Hadzi and A. T. Hagler, Proc. Natl. Acad. Sci. USA, 1993, 90, 8920.
26. D. M. York, T. Darden and L. G. Pedersen, J. Chem. Phys., 1993, 99, 8345.
27. T. E. Cheatham, J. L. Miller, T. Fox, T. A. Darden and P. A. Kollman, J. Am. Chem. Soc., 1995, 117, 4193.
28. P. Auffinger and D. L. Bevendge, Chem. Phys. Lett., 1995, 234, 413.
29. M. P. Allen and D. J. Tildesley, Computer Simulation of Liquids, Clarendon Press, Oxford, 1987.
30. D. M. York, A. Wlodawer, L. G. Pedersen and T. A. Darden, Proc. Natl. Acad. Sci. USA, 1994, 91, 8715.
31. D M. York, W. Yang, H. Lee, T. Darden and L. G. Pedersen, J. Am. Chem. Soc., 1995, 117, 5001.
32. H. Lee, T. A. Darden and L. G. Pedersen, J. Chem. Phys., 1995, 102, 3830.
33. S. Weerasinghe, P. E Smith, V. Mohan, Y-K. Cheng and B. M. Pettitt, J. Am. Chem. Soc., 1995, 117, 2147.
34. P. Auffinger, S. Louise-May and E. Westhof, J. Am. Chem. Soc., 1995, 117, 6720.
35. P. Auffinger and E. Westhof, unpublished results.
36. E. Westhof, P. Dumas and D. Moras, J. Mol. Biol., 1985, 184, 119.
37. H. M. Berman, W. K. Olson, D. L. Beveridge, J. Westbrook, A. Gelbin, T. Demeny, S. H Hsieh and A. R Srinivasan, Biophys J , 1992, 63, 751.
38. H. J. C. Berendsen, J. R. Grigera and T. P. Straatsma, J. Phys. Chem., 1987, 97, 6269.
39. T. Darden, D. York and L. Pedersen, J. Chem. Phys., 1993, 98, 10089.
40. U. Essmann, L. Perera, M L. Berkowitz, T. Darden, H. Lee and L. G. Pedersen, J. Chem. Phys., 1995, 103, 8577.
41. D. A. Pearlman, D. A. Case, J. W. Caldwell, W. S. Ross, T. E. Cheatham III, D. M. Ferguson, G. L. Seibel, U. C. Singh, P. K. Weiner and P. A. Kollman, AMBER 4 1, San Francisco, California, 1994.
42. S. Louise-May, P. Auffinger and E. Westhof, in Biological Structure and Dynamics. Proceedings of the Ninth Conversation, State University of New York, ed. R. H. Sarma and M. H. Sarma, Adenine Press, Albany, New York, in press.
43. E. Engler and G. Wipff, MDdraw: A Program to Visualize MD Trajectories, Université de Strasbourg, France, 1994.
44. D. A. Pearlman and S. H. Kim, J. Mol. Biol., 1990, 211, 171.
45. S. J. Weiner, P. A. Kollman, D. T. Nguyen and D. A. Case, J. Comput. Chem., 1986, 7, 230.
46. W. D Cornell, P. Cieplak, C. I. Bayly, I. R. Gould, K. M. Merz, D. M, Ferguson, D. C. Spellmeyer, T. Fox, J. W. Caldwel and P A Kollman, J. Am. Chem. Soc., 1995, 117, 5179.
47. J. Pranata, S G. Wierschke and W. L. Jorgensen, J. Am. Chem. Soc., 1991, 113, 2810.
48. U. C. Singh, F. K. Brown, P. A. Bash and P. A. Kollman, J. Am. Chem. Soc., 1987, 109, 1607.
49. P. F. W. S. Stouten, Thesis, Utrecht Rijkuniversiteit, 1989.
50. E. Westhof, P. Dumas and D Moras, Acta Crystallogr. Sect. A, 1988, 44, 112.
51. E. Westhof, P Dumas and D. Moras, Biochimie, 1988, 70, 145
52. B Schneider, D. Cohen and H. M. Berman, Biopolymers, 1992, 32, 725
53. W. N. Hunter, G. Kneale, T. Brown, D. Rabinovitch and O. Kennard, J. Mol. Biol., 1986, 190, 605.
54. J. G. Arnez and T. A. Steitz, Biochemistry, 1994, 33, 7560.
55. V. P. Denisov and B. Halle, J. Mol. Biol., 1995, 245, 682.
56. V. P. Denisov and B. Halle, J. Mol. Biol., 1995, 245, 698.
57. V. P. Denisov, B. Halle, J. Peters and H. D. Hörlein, Biochemistry, 1995, 34, 9046.
58. G. J. Quigley and A. Rich, Science, 1976, 194, 796.