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Volumn 72, Issue 6, 1997, Pages 2395-2397

Effect of periodic box size on aqueous molecular dynamics simulation of a DNA dodecamer with particle-mesh Ewald method

Author keywords

[No Author keywords available]

Indexed keywords

DNA; WATER;

EID: 0000952715     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/s0006-3495(97)78884-2     Document Type: Article
Times cited : (91)

References (17)
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    • Cheatham, T. E., III, J. J. Miller, T. Fox, T. A. Darden, and P. A. Kollman. 1995. Molecular dynamics simulations on solvated biomolecular systems: the particle mesh Ewald methods leads to stable trajectories of DNA, RNA, and proteins. J. Am. Chem. Soc. 117:4193-4194.
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  • 5
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    • Particle mesh Ewald: An N·log(N) method for Ewald sums in large systems
    • Darden, T., D. York, and L. Pedersen. 1993. Particle mesh Ewald: an N·log(N) method for Ewald sums in large systems. J. Chem. Phys. 103:8577-8593.
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    • Darden, T.1    York, D.2    Pedersen, L.3
  • 6
    • 0027203669 scopus 로고
    • A DNA dodecamer containing and adenine tract crystallizes in a unique lattice and exhibits a new bend
    • DiGabriele, A. D., and T. A. Steitz. 1993. A DNA dodecamer containing and adenine tract crystallizes in a unique lattice and exhibits a new bend. J. Mol. Biol. 231:1024-1039.
    • (1993) J. Mol. Biol. , vol.231 , pp. 1024-1039
    • DiGabriele, A.D.1    Steitz, T.A.2
  • 8
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    • The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids
    • Lavery, R., and H. Sklenar. 1989. The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids. J. Biomol. Struct Dyn. 6:63-91.
    • (1989) J. Biomol. Struct Dyn. , vol.6 , pp. 63-91
    • Lavery, R.1    Sklenar, H.2
  • 9
    • 0001628106 scopus 로고
    • Molecular dynamics study of a high resolution Z DNA crystal
    • Lee, H., T. A. Darden, and L. G. Pedersen. 1995. Molecular dynamics study of a high resolution Z DNA crystal. J. Chem. Phys. 102: 3830-3834.
    • (1995) J. Chem. Phys. , vol.102 , pp. 3830-3834
    • Lee, H.1    Darden, T.A.2    Pedersen, L.G.3
  • 13
    • 0000112790 scopus 로고    scopus 로고
    • Ewald artifacts in liquid state molecular dynamics simulations
    • Smith, P. E., and B. M. Pettit. 1996. Ewald artifacts in liquid state molecular dynamics simulations. J. Chem. Phys. 105:4289-4293.
    • (1996) J. Chem. Phys. , vol.105 , pp. 4289-4293
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    • Nanoseconds dynamics and structure of a model DNA triplex in saltwater solution
    • Weerasinghe, S., P. E. Smith, V. Mohan, Y.-K. Cheng, and B. M. Pettit. 1995. Nanoseconds dynamics and structure of a model DNA triplex in saltwater solution. J. Am. Chem. Soc. 117:2147-2158.
    • (1995) J. Am. Chem. Soc. , vol.117 , pp. 2147-2158
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    • Toward accurate modeling of DNA: The importance of long-range electrostatics
    • York, D. M., W. Yang, H. Lee, T. Darden, and L. G. Pedersen. 1995. Toward accurate modeling of DNA: the importance of long-range electrostatics. J. Am. Chem. Soc. 117:5001-5002.
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* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.