High-throughput gene silencing using cell arrays

Oncogene

Volumn 23, Issue 51 REV. ISS. 8, 2004, Pages 8353-8358

  Vanhecke, Dominique ^a   Janitz, Michal ^a  

^a MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

Author keywords

Cell array; Microarray; Reverse transfection; RNA interference

Indexed keywords

CELL DNA; SMALL INTERFERING RNA;

DNA MICROARRAY; GENE CONTROL; GENE FUNCTION; GENE SILENCING; GENETIC SCREENING; GENETIC TRANSFECTION; HUMAN; NONHUMAN; PRIORITY JOURNAL; REVIEW; RNA INTERFERENCE; TRANSCRIPTION REGULATION;

GENE SILENCING; GENOMICS; RNA INTERFERENCE; TRANSFECTION;

EID: 9144235839     PISSN: 09509232     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.onc.1208027     Document Type: Review

References (59)

1. Ashrafi K, Chang FY, Watts JL, Fraser AG, Kamath RS, Ahringer J and Ruvkun G. (2003). Nature, 421, 268-272.
2. Aza-Blanc P, Cooper C, Wagner K, Batalov S, Deveraux QL and Cooke MP. (2003). Mol. Cell, 12, 627-637.
3. Berns K, Hijmans EM, Mullenders J, Brummelkamp TR, Velds A, Heimerikx M, Kerkhoven RM, Madiredjo M, Nijkamp W, Weigelt B, Agami R, Ge W, Cavet G, Linsley PS, Beijersbergen RL and Bernards R. (2004). Nature, 428, 431-437.
4. Bernstein E, Caudy AA, Hammond SM and Hannon GJ. (2001). Nature, 409, 363-366.
5. Brummelkamp TR, Bernards R and Agami R. (2002). Science, 296, 550-553.
6. Brummelkamp TR, Nijman SMB, Dirac AMG and Bernards R. (2003). Nature, 424, 797-801.
7. Cerutti H. (2003). Trends Genet., 19, 39-46.
8. Chang FH, Lee CH, Chen MT, Kuo CC, Chiang YL, Hang CY and Roffler S. (2004). Nucleic Acids Res., 32, e33.
9. Colosimo A, Goncz KK, Holmes AR, Kunzelmann K, Novelli G, Malone RW, Bennett MJ and Gruenert DC. (2000). Biotechniques, 29, 314-318.
10. Crnkovic-Mertens I, Hoppe-Seyler F and Butz K. (2003). Oncogene, 22, 8330-8336.
11. Denli AM and Hannon GJ. (2003). Trends Biochem. Sci., 28, 196-201.
12. Dieterich C, Wang H, Rateitschak K, Luz H and Vingron M. (2003). Nucleic Acids Res., 31, 55-57.
13. Dykxhoorn DM, Novina CD and Sharp PA. (2003). Nat. Rev. Mol. Cell. Biol, 4, 457-467.
14. Elbashir SM, Harborth J, Lendeckel W, Yalcin A, Weber K and Tuschl T. (2001a). Nature, 411, 494-498.
15. Elbashir SM, Martinez J, Patkaniowska A, Lendeckel W and Tuschl T. (2001b). EMBO J., 20, 6877-6888.
16. Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE and Mello CC. (1998). Nature, 391, 806-811.
17. Gschwind A, Fischer OM and Ullrich A. (2004). Nat. Rev. Cancer, 5, 361-370.
18. Hannon GJ. (2002). Nature, 418, 244-251.
19. Kamath RS, Fraser AG, Dong Y, Poulin G, Durbin R, Gotta M, Kanapin A, Le Bot N, Moreno S, Sohrmann M, Welchman DP, Zipperlen P and Ahringer J. (2003). Nature, 421, 231-237.
20. Kiger A, Baum B, Jones S, Jones M, Coulson A, Echeverri C and Perrimon N. (2003). J. Biol, 2, 27.
21. Kumar R, Conklin DS and Mittal V. (2003). Genome Res., 13, 2333-2340.
22. Lee NS, Dohjima T, Bauer G, Li H, Li MJ, Ehsani A, Salvaterra P and Rossi J. (2002). Nat. Biotechnol., 20, 500-505.
23. Lee SS, Lee RY, Fraser AG, Kamath RS, Ahringer J and Ruvkun G. (2003). Nat. Genet., 33, 40-48.
24. Liu Q, Rand TA, Kalidas S, Du F, Kim HE, Smith DP and Wang X. (2003). Science, 301, 1921-1925.
25. Lum L, Yao S, Mozer B, Rovescalli A, Von Kessler D, Nirenberg M and Beachy PA. (2003). Science, 299, 2039-2045.
26. Martinez J and Tuschl T. (2004). Genes Dev., 18, 975-980.
27. Martinez LA, Naguibneva I, Lehrmann H, Vervisch A, Tchenio T, Lozano G and Harel-Bellan A. (2002). Proc. Natl. Acad. Sci. USA, 99, 14849-14854.
28. McManus MT, Petersen CP, Haines BB, Chen J and Sharp PA. (2002). RNA, 8, 842-850.
29. McManus MT and Sharp PA. (2002). Nat. Rev. Genet., 3, 737-747.
30. Mishina YM, Wilson CJ, Bruett L, Smith JJ, Stoop-Myer C, Jong S, Amaral LP, Pedersen R, Lyman SK, Myer VE, Kreider BL and Thompson CM. (2004). J. Biomol. Screen, 9, 196-207.
31. Miyagishi M and Taira K. (2002). Nucleic Acids Res. Suppl., 2, 113-114.
32. Mousses S, Caplen NJ, Cornelison R, Weaver D, Basik M, Hautaniemi S, Elkahloun AG, Lotufo RA, Choudary A, Dougherty ER, Suh E and Kallioniemi O. (2003). Genome Res., 13, 2341-2347.
33. Murphy D. (2002). Adv. Physiol. Educ., 26, 256-270.
34. Ooi SL, Shoemaker DD and Boeke JD. (2003). Nat. Genet., 35, 277-286.
35. Paddison PJ, Caudy AA, Bernstein E, Hannon GJ and Conklin DS. (2002). Genes Dev., 16, 948-958.
36. Paddison PJ and Hannon GJ. (2003). Curr. Opin. Mol. Ther., 5, 217-224.
37. Paddison PJ, Silva JM, Conklin DS, Schlabach M, Li M, Aruleba S, Balija V, O'Shaughnessy A, Gnoj L, Scobie K, Chang K, Westbrook T, Cleary M, Sachidanandam R, McCombie WR, Elledge SJ and Hannon GJ. (2004). Nature, 428, 427-431.
38. Paul CP, Good PD, Winer I and Engelke DR. (2002). Nat. Biotechnol., 20, 505-508.
39. Pothof J, van Haaften G, Thijssen K, Kamath RS, Fraser AG, Ahringer J, Plasterk RH and Tijsterman M. (2003). Genes Dev., 17, 443-448.
40. Price JH, Goodacre A, Hahn K, Hodgson L, Hunter EA, Krajewski S, Murphy RF, Rabinovich A, Reed JC and Heynen S. (2002). J. Cell. Biochem. Suppl., 39, 194-210.
41. Redmond TM, Ren X, Kubish G, Atkins S, Low S and Uhler MD. (2004). Mol. Cell. Proteomics (Epub ahead of print).
42. Schwarz DS, Hutvagner G, Du T, Xu Z, Aronin N and Zamore PD. (2003). Cell, 115, 199-208.
43. Shirane D, Sugao K, Namiki S, Tanabe M, Iino M and Hirose K. (2004). Nat. Genet., 36, 190-196.
44. Silva JM, Mizuno H, Brady A, Lucito R and Hannon GJ. (2004). Proc. Natl. Acad. Sci. USA, 101, 6548-6552.
45. Somma MP, Fasulo B, Cenci G, Cundari E and Gatti M. (2002). Mol. Cell. Biol., 13, 2448-2460.
46. Stark GR, Kerr IM, Williams BR, Silverman RH and Schreiber RD. (1998). Annu. Rev. Biochem., 67, 227-264.
47. Tavernarakis N, Wang SL, Dorovkov M, Ryazanov A and Driscoll M. (2000). Nat. Genet., 24, 180-183.
48. Trougakos IP, So A, Jansen B, Gleave ME and Gonos ES. (2004). Cancer Res., 64, 1834-1842.
49. van de Wetering M, Oving I, Muncan V, Pon Fong MT, Brantjes H, van Leenen D, Holstege FC, Brummelkamp TR, Agami R and Clevers H. (2003). EMBO Rep., 4, 609-615.
50. van Huijsduijnen RH, Bombrun A and Swinnen D. (2002). Drug Discov. Today, 19, 1013-1019.
51. Vanhecke D and Janitz M. (2004). Encyclopedic Reference of Genomics and Proteomics in Molecular Medicine. Ganten D and Ruckpaul K (eds). Springer-Verlag: Heidelberg, (in press).
52. Wang JC, Walker A, Blackwell TK and Yamamoto KR. (2004). J. Biol. Chem., 279, 29270-29277.
53. Williams BR. (1999). Oncogene, 18, 6112-6120.
54. Wolf DE. (2003). Methods Cell. Biol., 73, 319-336.
55. Yang D, Buchholz F, Huang Z, Goga A, Chen CY, Brodsky FM and Bishop JM. (2002). Proc. Natl. Acad. Sci. USA, 99, 9942-9947.
56. Yoshikawa T, Uchimura E, Kishi M, Funeriu DP, Miyake M and Miyake J. (2004). J. Control Rel., 96, 227-232.
57. Zemanov L, Schenk A, Valler MJ, Nienhaus GU and Heilker R. (2003). Drug Discov. Today, 8, 1085-1093.
58. Zheng L, Liu J, Batalov S, Zhou D, Orth A, Ding S and Schultz PG. (2004). Proc. Natl. Acad. Sci. USA, 101, 135-140.
59. Ziauddin J and Sabatini DM. (2001). Nature, 411, 107-110.