-
1
-
-
84896851032
-
Intestinal epithelial cells: regulators of barrier function and immune homeostasis
-
COI: 1:CAS:528:DC%2BC2cXivFyju7s%3D, PID: 24566914
-
Peterson, L. W. & Artis, D. Intestinal epithelial cells: regulators of barrier function and immune homeostasis. Nat. Rev. Immunol. 14, 141–153 (2014)
-
(2014)
Nat. Rev. Immunol.
, vol.14
, pp. 141-153
-
-
Peterson, L.W.1
Artis, D.2
-
2
-
-
84938555475
-
Three cheers for the goblet cell: maintaining homeostasis in mucosal epithelia
-
COI: 1:CAS:528:DC%2BC2MXhtFWgsLrK, PID: 26144290
-
McCauley, H. A. & Guasch, G. Three cheers for the goblet cell: maintaining homeostasis in mucosal epithelia. Trends Mol. Med. 21, 492–503 (2015).
-
(2015)
Trends Mol. Med.
, vol.21
, pp. 492-503
-
-
McCauley, H.A.1
Guasch, G.2
-
3
-
-
84977575286
-
The mucosal immune system and its regulation by autophagy
-
PID: 27446072
-
Kabat, A. M., Pott, J. & Maloy, K. J. The mucosal immune system and its regulation by autophagy. Front. Immunol. 7, 240 (2016).
-
(2016)
Front. Immunol.
, vol.7
, pp. 240
-
-
Kabat, A.M.1
Pott, J.2
Maloy, K.J.3
-
4
-
-
85062584244
-
Interactions between autophagy and the unfolded protein response: Implications for inflammatory bowel disease
-
Hooper, K. M., Barlow, P. G., Henderson, P. & Stevens, C. Interactions between autophagy and the unfolded protein response: implications for inflammatory bowel disease. Inflamm. Bowel Dis. 10.1093/ibd/izy380 (2018).
-
(2018)
Inflamm. Bowel Dis.
-
-
Hooper, K.M.1
Barlow, P.G.2
Henderson, P.3
Stevens, C.4
-
5
-
-
85047110060
-
Dietary and microbial oxazoles induce intestinal inflammation by modulating aryl hydrocarbon receptor responses
-
COI: 1:CAS:528:DC%2BC1cXpvVemurc%3D, PID: 29775592
-
Iyer, S. S. et al. Dietary and microbial oxazoles induce intestinal inflammation by modulating aryl hydrocarbon receptor responses. Cell 173, 1123–1134 (2018).
-
(2018)
Cell
, vol.173
, pp. 1123-1134
-
-
Iyer, S.S.1
-
6
-
-
85041733449
-
Inflammasome, inflammation, and tissue homeostasis
-
COI: 1:CAS:528:DC%2BC1cXitFyksb8%3D, PID: 29433944
-
Rathinam, V. A. K. & Chan, F. K.-M. Inflammasome, inflammation, and tissue homeostasis. Trends Mol. Med. 24, 304–318 (2018).
-
(2018)
Trends Mol. Med.
, vol.24
, pp. 304-318
-
-
Rathinam, V.A.K.1
Chan, F.K.-M.2
-
7
-
-
84863230541
-
+ dendritic cells in the small intestine
-
COI: 1:CAS:528:DC%2BC38XktVarsrc%3D, PID: 22422267
-
+ dendritic cells in the small intestine. Nature 483, 345–349 (2012).
-
(2012)
Nature
, vol.483
, pp. 345-349
-
-
McDole, J.R.1
-
8
-
-
84981169022
-
Immunological aspects of intestinal mucus and mucins
-
COI: 1:CAS:528:DC%2BC28Xht12lu7rO, PID: 27498766
-
Johansson, M. E. & Hansson, G. C. Immunological aspects of intestinal mucus and mucins. Nat. Rev. Immunol. 16, 639–649 (2016).
-
(2016)
Nat. Rev. Immunol.
, vol.16
, pp. 639-649
-
-
Johansson, M.E.1
Hansson, G.C.2
-
9
-
-
0034252293
-
Secretion of microbicidal α-defensins by intestinal Paneth cells in response to bacteria
-
COI: 1:CAS:528:DC%2BD3cXlsFOmur4%3D, PID: 11248802
-
Ayabe, T. et al. Secretion of microbicidal α-defensins by intestinal Paneth cells in response to bacteria. Nat. Immunol. 1, 113–118 (2000).
-
(2000)
Nat. Immunol.
, vol.1
, pp. 113-118
-
-
Ayabe, T.1
-
10
-
-
35548974423
-
Identification of stem cells in small intestine and colon by marker gene Lgr5
-
COI: 1:CAS:528:DC%2BD2sXht1Wgtr3E, PID: 17934449
-
Barker, N. et al. Identification of stem cells in small intestine and colon by marker gene Lgr5. Nature 449, 1003–1007 (2007).
-
(2007)
Nature
, vol.449
, pp. 1003-1007
-
-
Barker, N.1
-
11
-
-
84892405239
-
Lineage-specific expression of bestrophin-2 and bestrophin-4 in human intestinal epithelial cells
-
COI: 1:CAS:528:DC%2BC3sXhslGrtbjO, PID: 24223998
-
Ito, G. et al. Lineage-specific expression of bestrophin-2 and bestrophin-4 in human intestinal epithelial cells. PLoS ONE 8, e79693 (2013).
-
(2013)
PLoS One
, vol.8
-
-
Ito, G.1
-
12
-
-
85041207454
-
An evolutionarily conserved gene family encodes proton-selective ion channels
-
COI: 1:CAS:528:DC%2BC1cXjtlGqtLs%3D, PID: 29371428
-
Tu, Y. H. et al. An evolutionarily conserved gene family encodes proton-selective ion channels. Science 359, 1047–1050 (2018).
-
(2018)
Science
, vol.359
, pp. 1047-1050
-
-
Tu, Y.H.1
-
13
-
-
84973111665
-
Guanylin and uroguanylin are produced by mouse intestinal epithelial cells of columnar and secretory lineage
-
COI: 1:CAS:528:DC%2BC28XovV2jurs%3D, PID: 27246004
-
Ikpa, P. T. et al. Guanylin and uroguanylin are produced by mouse intestinal epithelial cells of columnar and secretory lineage. Histochem. Cell Biol. 146, 445–455 (2016).
-
(2016)
Histochem. Cell Biol.
, vol.146
, pp. 445-455
-
-
Ikpa, P.T.1
-
14
-
-
0027533507
-
Oxygen free radicals and metallothionein
-
COI: 1:CAS:528:DyaK3sXitlSkt74%3D, PID: 8458590
-
Sato, M. & Bremner, I. Oxygen free radicals and metallothionein. Free Radic. Biol. Med. 14, 325–337 (1993).
-
(1993)
Free Radic. Biol. Med.
, vol.14
, pp. 325-337
-
-
Sato, M.1
Bremner, I.2
-
15
-
-
85047617654
-
Tracing the temporal-spatial transcriptome landscapes of the human fetal digestive tract using single-cell RNA-sequencing
-
COI: 1:CAS:528:DC%2BC1cXhtVaisLnO, PID: 29802404, erratum 20, 1227 (2018
-
Gao, S. et al. Tracing the temporal-spatial transcriptome landscapes of the human fetal digestive tract using single-cell RNA-sequencing. Nat. Cell Biol. 20, 721–734 (2018); erratum 20, 1227 (2018).
-
(2018)
Nat. Cell Biol.
, vol.20
, pp. 721-734
-
-
Gao, S.1
-
16
-
-
76949087472
-
Normal colon epithelium: a dataset for the analysis of gene expression and alternative splicing events in colon disease
-
PID: 20047688
-
Mojica, W. & Hawthorn, L. Normal colon epithelium: a dataset for the analysis of gene expression and alternative splicing events in colon disease. BMC Genomics 11, 5 (2010).
-
(2010)
BMC Genomics
, vol.11
-
-
Mojica, W.1
Hawthorn, L.2
-
17
-
-
84902128077
-
Gene expression profiling of colorectal tumors and normal mucosa by microarrays meta-analysis using prediction analysis of microarray, artificial neural network, classification, and regression trees
-
PID: 24959000
-
Chu, C. M. et al. Gene expression profiling of colorectal tumors and normal mucosa by microarrays meta-analysis using prediction analysis of microarray, artificial neural network, classification, and regression trees. Dis. Markers 2014, 634123 (2014).
-
(2014)
Dis. Markers
, vol.2014
, pp. 634123
-
-
Chu, C.M.1
-
18
-
-
84983604746
-
Claudin-7 indirectly regulates the integrin/FAK signaling pathway in human colon cancer tissue
-
COI: 1:CAS:528:DC%2BC28XhsVant7bM, PID: 27121327
-
Ding, L. et al. Claudin-7 indirectly regulates the integrin/FAK signaling pathway in human colon cancer tissue. J. Hum. Genet. 61, 711–720 (2016).
-
(2016)
J. Hum. Genet.
, vol.61
, pp. 711-720
-
-
Ding, L.1
-
19
-
-
84884994218
-
The Cancer Genome Atlas Pan-Cancer analysis project
-
The Cancer Genome Atlas Research Network et al. The Cancer Genome Atlas Pan-Cancer analysis project. Nat. Genet. 45, 1113–1120 (2013).
-
(2013)
Nat. Genet.
, vol.45
, pp. 1113-1120
-
-
-
20
-
-
84945278159
-
Strong upregulation of AIM2 and IFI16 inflammasomes in the mucosa of patients with active inflammatory bowel disease
-
PID: 26313692
-
Vanhove, W. et al. Strong upregulation of AIM2 and IFI16 inflammasomes in the mucosa of patients with active inflammatory bowel disease. Inflamm. Bowel Dis. 21, 2673–2682 (2015).
-
(2015)
Inflamm. Bowel Dis.
, vol.21
, pp. 2673-2682
-
-
Vanhove, W.1
-
21
-
-
85015654390
-
Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors
-
COI: 1:CAS:528:DC%2BC2sXltVWgu78%3D, PID: 28319088, correction 50, 1754 (2018
-
Li, H. et al. Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors. Nat. Genet. 49, 708–718 (2017); correction 50, 1754 (2018).
-
(2017)
Nat. Genet.
, vol.49
, pp. 708-718
-
-
Li, H.1
-
22
-
-
85047289665
-
+ stem cells in colon
-
COI: 1:CAS:528:DC%2BC28XhsVWks7jF, PID: 27573849
-
+ stem cells in colon. Proc. Natl Acad. Sci. USA 113, E5399–E5407 (2016).
-
(2016)
Proc. Natl Acad. Sci. USA
, vol.113
, pp. E5399-E5407
-
-
Sasaki, N.1
-
23
-
-
84901453477
-
Heparin-binding epidermal growth factor-like growth factor restores Wnt/β-catenin signaling in intestinal stem cells exposed to ischemia/reperfusion injury
-
PID: 24856127
-
Chen, C.-L., Yang, J., James, I. O. A., Zhang, H. Y. & Besner, G. E. Heparin-binding epidermal growth factor-like growth factor restores Wnt/β-catenin signaling in intestinal stem cells exposed to ischemia/reperfusion injury. Surgery 155, 1069–1080 (2014).
-
(2014)
Surgery
, vol.155
, pp. 1069-1080
-
-
Chen, C.-L.1
Yang, J.2
James, I.O.A.3
Zhang, H.Y.4
Besner, G.E.5
-
24
-
-
84907021026
-
SNPsea: an algorithm to identify cell types, tissues and pathways affected by risk loci
-
COI: 1:CAS:528:DC%2BC2cXhsleiurrF, PID: 24813542
-
Slowikowski, K., Hu, X. & Raychaudhuri, S. SNPsea: an algorithm to identify cell types, tissues and pathways affected by risk loci. Bioinformatics 30, 2496–2497 (2014).
-
(2014)
Bioinformatics
, vol.30
, pp. 2496-2497
-
-
Slowikowski, K.1
Hu, X.2
Raychaudhuri, S.3
-
25
-
-
85008712412
-
Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease
-
PID: 28067908
-
de Lange, K. M. et al. Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease. Nat. Genet. 49, 256–261 (2017).
-
(2017)
Nat. Genet.
, vol.49
, pp. 256-261
-
-
de Lange, K.M.1
-
26
-
-
84940771118
-
Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations
-
COI: 1:CAS:528:DC%2BC2MXht1WltLvI, PID: 26192919
-
Liu, J. Z. et al. Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations. Nat. Genet. 47, 979–986 (2015).
-
(2015)
Nat. Genet.
, vol.47
, pp. 979-986
-
-
Liu, J.Z.1
-
27
-
-
85054427337
-
Structural remodeling of the human colonic mesenchyme in inflammatory bowel disease
-
COI: 1:CAS:528:DC%2BC1cXhvVahsLfL, PID: 30270042
-
Kinchen, J. et al. Structural remodeling of the human colonic mesenchyme in inflammatory bowel disease. Cell 175, 372–386 (2018).
-
(2018)
Cell
, vol.175
, pp. 372-386
-
-
Kinchen, J.1
-
28
-
-
79952195585
-
Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47
-
COI: 1:CAS:528:DC%2BC3MXhsFyqtro%3D, PID: 21297633, erratum 43, 919 (2011
-
Anderson, C. A. et al. Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47. Nat. Genet. 43, 246–252 (2011); erratum 43, 919 (2011).
-
(2011)
Nat. Genet.
, vol.43
, pp. 246-252
-
-
Anderson, C.A.1
-
29
-
-
33646823010
-
The DDAH-ADMA-NOS pathway
-
COI: 1:CAS:528:DC%2BD2MXhtlSrsbnE, PID: 16404814
-
Leiper, J. M. The DDAH-ADMA-NOS pathway. Ther. Drug Monit. 27, 744–746 (2005).
-
(2005)
Ther. Drug Monit.
, vol.27
, pp. 744-746
-
-
Leiper, J.M.1
-
30
-
-
84964772502
-
Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci
-
COI: 1:CAS:528:DC%2BC28XktFeqtLk%3D, PID: 26974007
-
Ellinghaus, D. et al. Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci. Nat. Genet. 48, 510–518 (2016).
-
(2016)
Nat. Genet.
, vol.48
, pp. 510-518
-
-
Ellinghaus, D.1
-
31
-
-
84868336049
-
Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease
-
COI: 1:CAS:528:DC%2BC38Xhs1ajtbzP, PID: 23128233
-
Jostins, L. et al. Host–microbe interactions have shaped the genetic architecture of inflammatory bowel disease. Nature 491, 119–124 (2012).
-
(2012)
Nature
, vol.491
, pp. 119-124
-
-
Jostins, L.1
-
32
-
-
84856956189
-
Dysregulation of laminins in intestinal inflammation
-
PID: 22100883
-
Spenlé, C. et al. Dysregulation of laminins in intestinal inflammation. Pathol. Biol. 60, 41–47 (2012).
-
(2012)
Pathol. Biol.
, vol.60
, pp. 41-47
-
-
Spenlé, C.1
-
33
-
-
84868347615
-
Human epididymis protein-4 (HE-4): a novel cross-class protease inhibitor
-
COI: 1:CAS:528:DC%2BC38XhslamurzI, PID: 23139753
-
Chhikara, N. et al. Human epididymis protein-4 (HE-4): a novel cross-class protease inhibitor. PLoS ONE 7, e47672 (2012).
-
(2012)
PLoS One
, vol.7
-
-
Chhikara, N.1
-
34
-
-
0034807847
-
Transport of lipophilic drug molecules in a new mucus-secreting cell culture model based on HT29-MTX cells
-
COI: 1:CAS:528:DC%2BD3MXnt1ekt70%3D, PID: 11587485
-
Behrens, I., Stenberg, P., Artursson, P. & Kissel, T. Transport of lipophilic drug molecules in a new mucus-secreting cell culture model based on HT29-MTX cells. Pharm. Res. 18, 1138–1145 (2001).
-
(2001)
Pharm. Res.
, vol.18
, pp. 1138-1145
-
-
Behrens, I.1
Stenberg, P.2
Artursson, P.3
Kissel, T.4
-
35
-
-
84928485053
-
Matrix metalloproteinases in inflammatory bowel disease: an update
-
PID: 25948887
-
O’Sullivan, S., Gilmer, J. F. & Medina, C. Matrix metalloproteinases in inflammatory bowel disease: an update. Mediators Inflamm. 2015, 964131 (2015).
-
(2015)
Mediators Inflamm.
, vol.2015
, pp. 964131
-
-
O’Sullivan, S.1
Gilmer, J.F.2
Medina, C.3
-
36
-
-
54449083567
-
The inner of the two Muc2 mucin-dependent mucus layers in colon is devoid of bacteria
-
COI: 1:CAS:528:DC%2BD1cXht1alsLvF, PID: 18806221
-
Johansson, M. E. V. et al. The inner of the two Muc2 mucin-dependent mucus layers in colon is devoid of bacteria. Proc. Natl Acad. Sci. USA 105, 15064–15069 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 15064-15069
-
-
Johansson, M.E.V.1
-
37
-
-
0030913746
-
Broad-spectrum antimicrobial activity of human intestinal defensin 5
-
COI: 1:CAS:528:DyaK2sXjsFWlsLc%3D, PID: 9169780
-
Porter, E. M., van Dam, E., Valore, E. V. & Ganz, T. Broad-spectrum antimicrobial activity of human intestinal defensin 5. Infect. Immun. 65, 2396–2401 (1997).
-
(1997)
Infect. Immun.
, vol.65
, pp. 2396-2401
-
-
Porter, E.M.1
van Dam, E.2
Valore, E.V.3
Ganz, T.4
-
38
-
-
33748039462
-
Symbiotic bacteria direct expression of an intestinal bactericidal lectin
-
COI: 1:CAS:528:DC%2BD28XotlCgtLc%3D, PID: 16931762
-
Cash, H. L., Whitham, C. V., Behrendt, C. L. & Hooper, L. V. Symbiotic bacteria direct expression of an intestinal bactericidal lectin. Science 313, 1126–1130 (2006).
-
(2006)
Science
, vol.313
, pp. 1126-1130
-
-
Cash, H.L.1
Whitham, C.V.2
Behrendt, C.L.3
Hooper, L.V.4
-
39
-
-
79952748335
-
The two mucus layers of colon are organized by the MUC2 mucin, whereas the outer layer is a legislator of host-microbial interactions
-
COI: 1:CAS:528:DC%2BC3MXjvVCrsrk%3D, PID: 20615996, Suppl 1
-
Johansson, M. E. V., Larsson, J. M. H. & Hansson, G. C. The two mucus layers of colon are organized by the MUC2 mucin, whereas the outer layer is a legislator of host-microbial interactions. Proc. Natl Acad. Sci. USA 108 (Suppl 1), 4659–4665 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 4659-4665
-
-
Johansson, M.E.V.1
Larsson, J.M.H.2
Hansson, G.C.3
-
40
-
-
85049127200
-
Guanylate cyclase-C as a therapeutic target in gastrointestinal disorders
-
COI: 1:CAS:528:DC%2BC1MXhvVKlsLc%3D, PID: 29563144
-
Waldman, S. A. & Camilleri, M. Guanylate cyclase-C as a therapeutic target in gastrointestinal disorders. Gut 67, 1543–1552 (2018).
-
(2018)
Gut
, vol.67
, pp. 1543-1552
-
-
Waldman, S.A.1
Camilleri, M.2
-
41
-
-
84891736162
-
Bacteria penetrate the normally impenetrable inner colon mucus layer in both murine colitis models and patients with ulcerative colitis
-
COI: 1:CAS:528:DC%2BC2cXkslartrg%3D, PID: 23426893
-
Johansson, M. E. et al. Bacteria penetrate the normally impenetrable inner colon mucus layer in both murine colitis models and patients with ulcerative colitis. Gut 63, 281–291 (2014).
-
(2014)
Gut
, vol.63
, pp. 281-291
-
-
Johansson, M.E.1
-
42
-
-
84864012522
-
Fast renewal of the distal colonic mucus layers by the surface goblet cells as measured by in vivo labeling of mucin glycoproteins
-
COI: 1:CAS:528:DC%2BC38XhtVyrsrjK, PID: 22815896
-
Johansson, M. E. Fast renewal of the distal colonic mucus layers by the surface goblet cells as measured by in vivo labeling of mucin glycoproteins. PLoS ONE 7, e41009 (2012).
-
(2012)
PLoS One
, vol.7
-
-
Johansson, M.E.1
-
43
-
-
84891677425
-
Full-length RNA-seq from single cells using Smart-seq2
-
COI: 1:CAS:528:DC%2BC2cXls1ejtrc%3D, PID: 24385147
-
Picelli, S. et al. Full-length RNA-seq from single cells using Smart-seq2. Nat. Protocols 9, 171-181 (2014).
-
(2014)
Nat. Protocols
, vol.9
, pp. 171-181
-
-
Picelli, S.1
-
44
-
-
85032830146
-
Evaluation of FASP, SP3, and iST protocols for proteomic sample preparation in the low microgram range
-
COI: 1:CAS:528:DC%2BC2sXhsFCrtb%2FP, PID: 28948796
-
Sielaff, M. et al. Evaluation of FASP, SP3, and iST protocols for proteomic sample preparation in the low microgram range. J. Proteome Res. 16, 4060–4072 (2017).
-
(2017)
J. Proteome Res.
, vol.16
, pp. 4060-4072
-
-
Sielaff, M.1
-
45
-
-
84910061461
-
Ultrasensitive proteome analysis using paramagnetic bead technology
-
Hughes, C. S. et al. Ultrasensitive proteome analysis using paramagnetic bead technology. Mol. Syst. Biol. 10, 757 (2014).
-
(2014)
Mol. Syst. Biol.
, vol.10
, pp. 757
-
-
Hughes, C.S.1
-
46
-
-
77957906400
-
Bacteria penetrate the inner mucus layer before inflammation in the dextran sulfate colitis model
-
PID: 20805871
-
Johansson, M. E. V. et al. Bacteria penetrate the inner mucus layer before inflammation in the dextran sulfate colitis model. PLoS ONE 5, e12238 (2010).
-
(2010)
PLoS One
, vol.5
-
-
Johansson, M.E.V.1
-
47
-
-
79959210305
-
A conditional knockout resource for the genome-wide study of mouse gene function
-
COI: 1:CAS:528:DC%2BC3MXnsFOqsrs%3D, PID: 21677750
-
Skarnes, W. C. et al. A conditional knockout resource for the genome-wide study of mouse gene function. Nature 474, 337–342 (2011).
-
(2011)
Nature
, vol.474
, pp. 337-342
-
-
Skarnes, W.C.1
-
48
-
-
84867332476
-
The mammalian gene function resource: the International Knockout Mouse Consortium
-
PID: 22968824
-
Bradley, A. et al. The mammalian gene function resource: the International Knockout Mouse Consortium. Mamm. Genome 23, 580–586 (2012).
-
(2012)
Mamm. Genome
, vol.23
, pp. 580-586
-
-
Bradley, A.1
-
49
-
-
67649574240
-
Agouti C57BL/6N embryonic stem cells for mouse genetic resources
-
COI: 1:CAS:528:DC%2BD1MXnt1Sht7o%3D, PID: 19525957
-
Pettitt, S. J. et al. Agouti C57BL/6N embryonic stem cells for mouse genetic resources. Nat. Methods 6, 493–495 (2009).
-
(2009)
Nat. Methods
, vol.6
, pp. 493-495
-
-
Pettitt, S.J.1
-
50
-
-
0031015257
-
Neutralization of tumour necrosis factor (TNF) but not of IL-1 reduces inflammation in chronic dextran sulphate sodium-induced colitis in mice
-
COI: 1:CAS:528:DyaK2sXht12hs74%3D, PID: 9030875
-
Kojouharoff, G. et al. Neutralization of tumour necrosis factor (TNF) but not of IL-1 reduces inflammation in chronic dextran sulphate sodium-induced colitis in mice. Clin. Exp. Immunol. 107, 353–358 (1997).
-
(1997)
Clin. Exp. Immunol.
, vol.107
, pp. 353-358
-
-
Kojouharoff, G.1
-
51
-
-
0027437938
-
Differential expression of the human mucin genes MUC1 to MUC5 in relation to growth and differentiation of different mucus-secreting HT-29 cell subpopulations
-
COI: 1:CAS:528:DyaK2cXhvVyju7k%3D, PID: 8308060
-
Lesuffleur, T. et al. Differential expression of the human mucin genes MUC1 to MUC5 in relation to growth and differentiation of different mucus-secreting HT-29 cell subpopulations. J. Cell Sci. 106, 771–783 (1993).
-
(1993)
J. Cell Sci.
, vol.106
, pp. 771-783
-
-
Lesuffleur, T.1
-
52
-
-
79958172300
-
A simple, versatile and efficient method to genetically modify human monocyte-derived dendritic cells with HIV-1-derived lentiviral vectors
-
COI: 1:CAS:528:DC%2BC3MXmvFyqt7s%3D, PID: 21637200
-
Berger, G. et al. A simple, versatile and efficient method to genetically modify human monocyte-derived dendritic cells with HIV-1-derived lentiviral vectors. Nat. Protocols 6, 806–816 (2011).
-
(2011)
Nat. Protocols
, vol.6
, pp. 806-816
-
-
Berger, G.1
-
53
-
-
80054857419
-
Long-term expansion of epithelial organoids from human colon, adenoma, adenocarcinoma, and Barrett’s epithelium
-
COI: 1:CAS:528:DC%2BC3MXhtlOksb3E, PID: 21889923
-
Sato, T. et al. Long-term expansion of epithelial organoids from human colon, adenoma, adenocarcinoma, and Barrett’s epithelium. Gastroenterology 141, 1762–1772 (2011).
-
(2011)
Gastroenterology
, vol.141
, pp. 1762-1772
-
-
Sato, T.1
-
54
-
-
84875608234
-
The UCSC genome browser and associated tools
-
COI: 1:CAS:528:DC%2BC3sXkvFKrur0%3D, PID: 22908213
-
Kuhn, R. M., Haussler, D. & Kent, W. J. The UCSC genome browser and associated tools. Brief. Bioinform. 14, 144–161 (2013).
-
(2013)
Brief. Bioinform.
, vol.14
, pp. 144-161
-
-
Kuhn, R.M.1
Haussler, D.2
Kent, W.J.3
-
55
-
-
0347755531
-
The UCSC Table Browser data retrieval tool
-
COI: 1:CAS:528:DC%2BD3sXhtVSrurfP, PID: 14681465
-
Karolchik, D. et al. The UCSC Table Browser data retrieval tool. Nucleic Acids Res. 32, D493–D496 (2004).
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. D493-D496
-
-
Karolchik, D.1
-
56
-
-
85046298440
-
Integrating single-cell transcriptomic data across different conditions, technologies, and species
-
COI: 1:CAS:528:DC%2BC1cXmslKrtL0%3D, PID: 29608179
-
Butler, A., Hoffman, P., Smibert, P., Papalexi, E. & Satija, R. Integrating single-cell transcriptomic data across different conditions, technologies, and species. Nat. Biotechnol. 36, 411–420 (2018).
-
(2018)
Nat. Biotechnol.
, vol.36
, pp. 411-420
-
-
Butler, A.1
Hoffman, P.2
Smibert, P.3
Papalexi, E.4
Satija, R.5
-
57
-
-
84939772971
-
Computational assignment of cell-cycle stage from single-cell transcriptome data
-
COI: 1:CAS:528:DC%2BC2MXhtF2kurjF
-
Scialdone, A. et al. Computational assignment of cell-cycle stage from single-cell transcriptome data. Methods 85, 54–61 (2015).
-
(2015)
Methods
, vol.85
, pp. 54-61
-
-
Scialdone, A.1
-
58
-
-
85046289733
-
Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors
-
COI: 1:CAS:528:DC%2BC1cXmslKrtLo%3D, PID: 29608177
-
Haghverdi, L., Lun, A. T. L., Morgan, M. D. & Marioni, J. C. Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors. Nat. Biotechnol. 36, 421–427 (2018).
-
(2018)
Nat. Biotechnol.
, vol.36
, pp. 421-427
-
-
Haghverdi, L.1
Lun, A.T.L.2
Morgan, M.D.3
Marioni, J.C.4
-
59
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-
PID: 25516281
-
Love, M. I., Huber, W. & Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550 (2014).
-
(2014)
Genome Biol.
, vol.15
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
60
-
-
84951574149
-
MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data
-
PID: 26653891
-
Finak, G. et al. MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data. Genome Biol. 16, 278 (2015).
-
(2015)
Genome Biol.
, vol.16
-
-
Finak, G.1
-
61
-
-
84926507971
-
limma powers differential expression analyses for RNA-sequencing and microarray studies
-
PID: 25605792
-
Ritchie, M. E. et al. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 43, e47 (2015).
-
(2015)
Nucleic Acids Res.
, vol.43
-
-
Ritchie, M.E.1
-
62
-
-
84860718683
-
clusterProfiler: an R package for comparing biological themes among gene clusters
-
COI: 1:CAS:528:DC%2BC38XmsFarsLw%3D, PID: 3339379
-
Yu, G., Wang, L.-G., Han, Y. & He, Q.-Y. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS 16, 284–287 (2012).
-
(2012)
OMICS
, vol.16
, pp. 284-287
-
-
Yu, G.1
Wang, L.-G.2
Han, Y.3
He, Q.-Y.4
-
63
-
-
84871809302
-
STAR: ultrafast universal RNA-seq aligner
-
COI: 1:CAS:528:DC%2BC38XhvV2gsbnF, PID: 23104886
-
Dobin, A. et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29, 15–21 (2013).
-
(2013)
Bioinformatics
, vol.29
, pp. 15-21
-
-
Dobin, A.1
-
64
-
-
85017522016
-
SCnorm: robust normalization of single-cell RNA-seq data
-
COI: 1:CAS:528:DC%2BC2sXmtFGhtLY%3D, PID: 28418000
-
Bacher, R. et al. SCnorm: robust normalization of single-cell RNA-seq data. Nat. Methods 14, 584–586 (2017).
-
(2017)
Nat. Methods
, vol.14
, pp. 584-586
-
-
Bacher, R.1
-
65
-
-
85031017685
-
Reversed graph embedding resolves complex single-cell trajectories
-
COI: 1:CAS:528:DC%2BC2sXhtlKjtbbK, PID: 28825705
-
Qiu, X. et al. Reversed graph embedding resolves complex single-cell trajectories. Nat. Methods 14, 979–982 (2017).
-
(2017)
Nat. Methods
, vol.14
, pp. 979-982
-
-
Qiu, X.1
-
66
-
-
85016161935
-
The new NHGRI-EBI catalog of published genome-wide association studies (GWAS catalog)
-
COI: 1:CAS:528:DC%2BC1cXhslWhs7c%3D, PID: 27899670, D1
-
MacArthur, J. et al. The new NHGRI-EBI catalog of published genome-wide association studies (GWAS catalog). Nucleic Acids Res. 45 (D1), D896–D901 (2017).
-
(2017)
Nucleic Acids Res.
, vol.45
, pp. D896-D901
-
-
MacArthur, J.1
-
67
-
-
84943171338
-
A global reference for human genetic variation
-
The 1000 Genome Projects Consortium. A global reference for human genetic variation. Nature 526, 68–74 (2015).
-
(2015)
Nature
, vol.526
, pp. 68-74
-
-
-
68
-
-
85045328177
-
Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types
-
COI: 1:CAS:528:DC%2BC1cXnsVGrtr4%3D, PID: 29632380
-
Finucane, H. K. et al. Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types. Nat. Genet. 50, 621–629 (2018).
-
(2018)
Nat. Genet.
, vol.50
, pp. 621-629
-
-
Finucane, H.K.1
-
69
-
-
84976871411
-
2016 update of the PRIDE database and its related tools
-
PID: 26527722, D1
-
Vizcaíno, J. A. et al. 2016 update of the PRIDE database and its related tools. Nucleic Acids Res. 44 (D1), D447–D456 (2016).
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D447-D456
-
-
Vizcaíno, J.A.1
|