-
1
-
-
80051624900
-
Deep and highly sensitive proteome coverage by LC-MS/MS without prefractionation
-
Thakur, S. S.; Geiger, T.; Chatterjee, B.; Bandilla, P.; Fröhlich, F.; Cox, J.; Mann, M. Deep and highly sensitive proteome coverage by LC-MS/MS without prefractionation Mol. Cell. Proteomics 2011, 10 (8) M110.003699 10.1074/mcp.M110.003699
-
(2011)
Mol. Cell. Proteomics
, vol.10
, Issue.8
, pp. M110003699
-
-
Thakur, S.S.1
Geiger, T.2
Chatterjee, B.3
Bandilla, P.4
Fröhlich, F.5
Cox, J.6
Mann, M.7
-
2
-
-
84859631603
-
Trends in ultrasensitive proteomics
-
Altelaar, A. F. M.; Heck, A. J. R. Trends in ultrasensitive proteomics Curr. Opin. Chem. Biol. 2012, 16 (1-2) 206-213 10.1016/j.cbpa.2011.12.011
-
(2012)
Curr. Opin. Chem. Biol.
, vol.16
, Issue.12
, pp. 206-213
-
-
Altelaar, A.F.M.1
Heck, A.J.R.2
-
3
-
-
79959691201
-
Comparison between procedures using SDS for shotgun proteomic analyses of complex samples
-
Bereman, M. S.; Egertson, J. D.; MacCoss, M. J. Comparison between procedures using SDS for shotgun proteomic analyses of complex samples Proteomics 2011, 11 (14) 2931-2935 10.1002/pmic.201100045
-
(2011)
Proteomics
, vol.11
, Issue.14
, pp. 2931-2935
-
-
Bereman, M.S.1
Egertson, J.D.2
MacCoss, M.J.3
-
4
-
-
84868157631
-
Evaluation of SDS depletion using an affinity spin column and IMS-MS detection
-
Hengel, S. M.; Floyd, E.; Baker, E. S.; Zhao, R.; Wu, S.; Paša-Tolić, L. Evaluation of SDS depletion using an affinity spin column and IMS-MS detection Proteomics 2012, 12 (21) 3138-3142 10.1002/pmic.201200168
-
(2012)
Proteomics
, vol.12
, Issue.21
, pp. 3138-3142
-
-
Hengel, S.M.1
Floyd, E.2
Baker, E.S.3
Zhao, R.4
Wu, S.5
Paša-Tolić, L.6
-
5
-
-
84943375563
-
Comparison of sodium dodecyl sulfate depletion techniques for proteome analysis by mass spectrometry
-
Kachuk, C.; Stephen, K.; Doucette, A. Comparison of sodium dodecyl sulfate depletion techniques for proteome analysis by mass spectrometry J. Chromatogr. A 2015, 1418, 158-166 10.1016/j.chroma.2015.09.042
-
(2015)
J. Chromatogr. A
, vol.1418
, pp. 158-166
-
-
Kachuk, C.1
Stephen, K.2
Doucette, A.3
-
6
-
-
18844460394
-
Sample preparation and digestion for proteomic analyses using spin filters
-
Manza, L. L.; Stamer, S. L.; Ham, A.-J. L.; Codreanu, S. G.; Liebler, D. C. Sample preparation and digestion for proteomic analyses using spin filters Proteomics 2005, 5 (7) 1742-1745 10.1002/pmic.200401063
-
(2005)
Proteomics
, vol.5
, Issue.7
, pp. 1742-1745
-
-
Manza, L.L.1
Stamer, S.L.2
Ham, A.-J.L.3
Codreanu, S.G.4
Liebler, D.C.5
-
7
-
-
67349266694
-
Universal sample preparation method for proteome analysis
-
Wiśniewski, J. R.; Zougman, A.; Nagaraj, N.; Mann, M. Universal sample preparation method for proteome analysis Nat. Methods 2009, 6 (5) 359-362 10.1038/nmeth.1322
-
(2009)
Nat. Methods
, vol.6
, Issue.5
, pp. 359-362
-
-
Wiśniewski, J.R.1
Zougman, A.2
Nagaraj, N.3
Mann, M.4
-
8
-
-
84922386015
-
Proteomic Challenges: Sample Preparation Techniques for Microgram-Quantity Protein Analysis from Biological Samples
-
Feist, P.; Hummon, A. Proteomic Challenges: Sample Preparation Techniques for Microgram-Quantity Protein Analysis from Biological Samples Int. J. Mol. Sci. 2015, 16 (2) 3537-3563 10.3390/ijms16023537
-
(2015)
Int. J. Mol. Sci.
, vol.16
, Issue.2
, pp. 3537-3563
-
-
Feist, P.1
Hummon, A.2
-
9
-
-
84910061461
-
Ultrasensitive proteome analysis using paramagnetic bead technology
-
Hughes, C. S.; Foehr, S.; Garfield, D. A.; Furlong, E. E.; Steinmetz, L. M.; Krijgsveld, J. Ultrasensitive proteome analysis using paramagnetic bead technology Mol. Syst. Biol. 2014, 10 (10) 757-757 10.15252/msb.20145625
-
(2014)
Mol. Syst. Biol.
, vol.10
, Issue.10
, pp. 757
-
-
Hughes, C.S.1
Foehr, S.2
Garfield, D.A.3
Furlong, E.E.4
Steinmetz, L.M.5
Krijgsveld, J.6
-
10
-
-
84895538371
-
Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells
-
Kulak, N. A.; Pichler, G.; Paron, I.; Nagaraj, N.; Mann, M. Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells Nat. Methods 2014, 11 (3) 319-324 10.1038/nmeth.2834
-
(2014)
Nat. Methods
, vol.11
, Issue.3
, pp. 319-324
-
-
Kulak, N.A.1
Pichler, G.2
Paron, I.3
Nagaraj, N.4
Mann, M.5
-
11
-
-
79960011243
-
High recovery FASP applied to the proteomic analysis of microdissected formalin fixed paraffin embedded cancer tissues retrieves known colon cancer markers
-
Wiśniewski, J. R.; Ostasiewicz, P.; Mann, M. High recovery FASP applied to the proteomic analysis of microdissected formalin fixed paraffin embedded cancer tissues retrieves known colon cancer markers J. Proteome Res. 2011, 10 (7) 3040-3049 10.1021/pr200019m
-
(2011)
J. Proteome Res.
, vol.10
, Issue.7
, pp. 3040-3049
-
-
Wiśniewski, J.R.1
Ostasiewicz, P.2
Mann, M.3
-
12
-
-
79551510422
-
Comparison of ultrafiltration units for proteomic and N-glycoproteomic analysis by the filter-aided sample preparation method
-
Wiśniewski, J. R.; Zielinska, D. F.; Mann, M. Comparison of ultrafiltration units for proteomic and N-glycoproteomic analysis by the filter-aided sample preparation method Anal. Biochem. 2011, 410 (2) 307-309 10.1016/j.ab.2010.12.004
-
(2011)
Anal. Biochem.
, vol.410
, Issue.2
, pp. 307-309
-
-
Wiśniewski, J.R.1
Zielinska, D.F.2
Mann, M.3
-
13
-
-
84858725817
-
Consecutive proteolytic digestion in an enzyme reactor increases depth of proteomic and phosphoproteomic analysis
-
Wiśniewski, J. R.; Mann, M. Consecutive proteolytic digestion in an enzyme reactor increases depth of proteomic and phosphoproteomic analysis Anal. Chem. 2012, 84 (6) 2631-2637 10.1021/ac300006b
-
(2012)
Anal. Chem.
, vol.84
, Issue.6
, pp. 2631-2637
-
-
Wiśniewski, J.R.1
Mann, M.2
-
14
-
-
84898731769
-
Enhanced FASP (eFASP) to increase proteome coverage and sample recovery for quantitative proteomic experiments
-
Erde, J.; Loo, R. R. O.; Loo, J. A. Enhanced FASP (eFASP) to increase proteome coverage and sample recovery for quantitative proteomic experiments J. Proteome Res. 2014, 13 (4) 1885-1895 10.1021/pr4010019
-
(2014)
J. Proteome Res.
, vol.13
, Issue.4
, pp. 1885-1895
-
-
Erde, J.1
Loo, R.R.O.2
Loo, J.A.3
-
15
-
-
84881170591
-
IFASP: Combining isobaric mass tagging with filter-aided sample preparation
-
McDowell, G. S.; Gaun, A.; Steen, H. IFASP: Combining isobaric mass tagging with filter-aided sample preparation J. Proteome Res. 2013, 12 (8) 3809-3812 10.1021/pr400032m
-
(2013)
J. Proteome Res.
, vol.12
, Issue.8
, pp. 3809-3812
-
-
McDowell, G.S.1
Gaun, A.2
Steen, H.3
-
16
-
-
84883295723
-
Comparison of detergent-based sample preparation workflows for LTQ-Orbitrap analysis of the Escherichia coli proteome
-
Tanca, A.; Biosa, G.; Pagnozzi, D.; Addis, M. F.; Uzzau, S. Comparison of detergent-based sample preparation workflows for LTQ-Orbitrap analysis of the Escherichia coli proteome Proteomics 2013, 13 (17) 2597-2607 10.1002/pmic.201200478
-
(2013)
Proteomics
, vol.13
, Issue.17
, pp. 2597-2607
-
-
Tanca, A.1
Biosa, G.2
Pagnozzi, D.3
Addis, M.F.4
Uzzau, S.5
-
17
-
-
84902094502
-
Comprehensive Comparative and Semiquantitative Proteome of a Very Low Number of Native and Matched Epstein-Barr-Virus-Transformed B Lymphocytes Infiltrating Human Melanoma
-
Maurer, M.; Müller, A. C.; Parapatics, K.; Pickl, W. F.; Wagner, C.; Rudashevskaya, E. L.; Breitwieser, F. P.; Colinge, J.; Garg, K.; Griss, J. et al. Comprehensive Comparative and Semiquantitative Proteome of a Very Low Number of Native and Matched Epstein-Barr-Virus-Transformed B Lymphocytes Infiltrating Human Melanoma J. Proteome Res. 2014, 13 (6) 2830-2845 10.1021/pr401270y
-
(2014)
J. Proteome Res.
, vol.13
, Issue.6
, pp. 2830-2845
-
-
Maurer, M.1
Müller, A.C.2
Parapatics, K.3
Pickl, W.F.4
Wagner, C.5
Rudashevskaya, E.L.6
Breitwieser, F.P.7
Colinge, J.8
Garg, K.9
Griss, J.10
-
18
-
-
84873354356
-
Combining filter-aided sample preparation and pseudoshotgun technology to profile the proteome of a low number of early passage human melanoma cells
-
Maurer, M.; Müller, A. C.; Wagner, C.; Huber, M. L.; Rudashevskaya, E. L.; Wagner, S. N.; Bennett, K. L. Combining filter-aided sample preparation and pseudoshotgun technology to profile the proteome of a low number of early passage human melanoma cells J. Proteome Res. 2013, 12 (2) 1040-1048 10.1021/pr301009u
-
(2013)
J. Proteome Res.
, vol.12
, Issue.2
, pp. 1040-1048
-
-
Maurer, M.1
Müller, A.C.2
Wagner, C.3
Huber, M.L.4
Rudashevskaya, E.L.5
Wagner, S.N.6
Bennett, K.L.7
-
19
-
-
85017412054
-
A Method for Microalgae Proteomics Analysis Based on Modified Filter-Aided Sample Preparation
-
[Online early access]. DOI
-
Li, S.; Cao, X.; Wang, Y.; Zhu, Z.; Zhang, H.; Xue, S.; Tian, J. A Method for Microalgae Proteomics Analysis Based on Modified Filter-Aided Sample Preparation. Appl. Biochem. Biotechnol. [Online early access] 2017. DOI: 10.1007/s12010-017-2473-9.
-
(2017)
Appl. Biochem. Biotechnol.
-
-
Li, S.1
Cao, X.2
Wang, Y.3
Zhu, Z.4
Zhang, H.5
Xue, S.6
Tian, J.7
-
20
-
-
84876314836
-
Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10000 proteins
-
Wiśniewski, J. R.; Duś, K.; Mann, M. Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10000 proteins Proteomics: Clin. Appl. 2013, 7 (3-4) 225-233 10.1002/prca.201200046
-
(2013)
Proteomics: Clin. Appl.
, vol.7
, Issue.34
, pp. 225-233
-
-
Wiśniewski, J.R.1
Duś, K.2
Mann, M.3
-
21
-
-
85019653988
-
Large-Scale Filter-Aided Sample Preparation Method for the Analysis of the Ubiquitinome
-
Casanovas, A.; Pinto-Llorente, R.; Carrascal, M.; Abian, J. Large-Scale Filter-Aided Sample Preparation Method for the Analysis of the Ubiquitinome Anal. Chem. 2017, 89 (7) 3840-3846 10.1021/acs.analchem.6b04804
-
(2017)
Anal. Chem.
, vol.89
, Issue.7
, pp. 3840-3846
-
-
Casanovas, A.1
Pinto-Llorente, R.2
Carrascal, M.3
Abian, J.4
-
22
-
-
77953240454
-
Precision Mapping of an in Vivo N-Glycoproteome Reveals Rigid Topological and Sequence Constraints
-
Zielinska, D. F.; Gnad, F.; Wiśniewski, J. R.; Mann, M. Precision Mapping of an In Vivo N-Glycoproteome Reveals Rigid Topological and Sequence Constraints Cell 2010, 141 (5) 897-907 10.1016/j.cell.2010.04.012
-
(2010)
Cell
, vol.141
, Issue.5
, pp. 897-907
-
-
Zielinska, D.F.1
Gnad, F.2
Wiśniewski, J.R.3
Mann, M.4
-
23
-
-
77954565509
-
Brain phosphoproteome obtained by a fasp-based method reveals plasma membrane protein topology
-
Wiśniewski, J. R.; Nagaraj, N.; Zougman, A.; Gnad, F.; Mann, M. Brain phosphoproteome obtained by a fasp-based method reveals plasma membrane protein topology J. Proteome Res. 2010, 9 (6) 3280-3289 10.1021/pr1002214
-
(2010)
J. Proteome Res.
, vol.9
, Issue.6
, pp. 3280-3289
-
-
Wiśniewski, J.R.1
Nagaraj, N.2
Zougman, A.3
Gnad, F.4
Mann, M.5
-
24
-
-
84924390372
-
Comparative reevaluation of FASP and enhanced FASP methods by LC - MS/MS
-
Nel, A. J. M.; Garnett, S.; Blackburn, J. M.; Soares, N. C. Comparative reevaluation of FASP and enhanced FASP methods by LC-MS/MS J. Proteome Res. 2015, 14 (3) 1637-1642 10.1021/pr501266c
-
(2015)
J. Proteome Res.
, vol.14
, Issue.3
, pp. 1637-1642
-
-
Nel, A.J.M.1
Garnett, S.2
Blackburn, J.M.3
Soares, N.C.4
-
25
-
-
85012986121
-
Trifunctional lipid probes for comprehensive studies of single lipid species in living cells
-
Höglinger, D.; Nadler, A.; Haberkant, P.; Kirkpatrick, J.; Schifferer, M.; Stein, F.; Hauke, S.; Porter, F. D.; Schultz, C. Trifunctional lipid probes for comprehensive studies of single lipid species in living cells Proc. Natl. Acad. Sci. U. S. A. 2017, 114 (7) 1566-1571 10.1073/pnas.1611096114
-
(2017)
Proc. Natl. Acad. Sci. U. S. A.
, vol.114
, Issue.7
, pp. 1566-1571
-
-
Höglinger, D.1
Nadler, A.2
Haberkant, P.3
Kirkpatrick, J.4
Schifferer, M.5
Stein, F.6
Hauke, S.7
Porter, F.D.8
Schultz, C.9
-
26
-
-
84959449213
-
Streamlined discovery of cross-linked chromatin complexes and associated histone modifications by mass spectrometry
-
Zee, B. M.; Alekseyenko, A. A.; McElroy, K. A.; Kuroda, M. I. Streamlined discovery of cross-linked chromatin complexes and associated histone modifications by mass spectrometry Proc. Natl. Acad. Sci. U. S. A. 2016, 113 (7) 1784-1789 10.1073/pnas.1522750113
-
(2016)
Proc. Natl. Acad. Sci. U. S. A.
, vol.113
, Issue.7
, pp. 1784-1789
-
-
Zee, B.M.1
Alekseyenko, A.A.2
McElroy, K.A.3
Kuroda, M.I.4
-
27
-
-
84995494420
-
Expanding the Circuitry of Pluripotency by Selective Isolation of Chromatin-Associated Proteins
-
Rafiee, M.-R.; Girardot, C.; Sigismondo, G.; Krijgsveld, J. Expanding the Circuitry of Pluripotency by Selective Isolation of Chromatin-Associated Proteins Mol. Cell 2016, 64 (3) 624-635 10.1016/j.molcel.2016.09.019
-
(2016)
Mol. Cell
, vol.64
, Issue.3
, pp. 624-635
-
-
Rafiee, M.-R.1
Girardot, C.2
Sigismondo, G.3
Krijgsveld, J.4
-
28
-
-
85000786916
-
Set of Novel Automated Quantitative Microproteomics Protocols for Small Sample Amounts and Its Application to Kidney Tissue Substructures
-
De Graaf, E. L.; Pellegrini, D.; McDonnell, L. A. Set of Novel Automated Quantitative Microproteomics Protocols for Small Sample Amounts and Its Application to Kidney Tissue Substructures J. Proteome Res. 2016, 15 (12) 4722-4730 10.1021/acs.jproteome.6b00889
-
(2016)
J. Proteome Res.
, vol.15
, Issue.12
, pp. 4722-4730
-
-
De Graaf, E.L.1
Pellegrini, D.2
McDonnell, L.A.3
-
29
-
-
84982833973
-
Identification of Maturation-Specific Proteins by Single-Cell Proteomics of Human Oocytes
-
Virant-Klun, I.; Leicht, S.; Hughes, C.; Krijgsveld, J. Identification of Maturation-Specific Proteins by Single-Cell Proteomics of Human Oocytes Mol. Cell. Proteomics 2016, 15 (8) 2616-2627 10.1074/mcp.M115.056887
-
(2016)
Mol. Cell. Proteomics
, vol.15
, Issue.8
, pp. 2616-2627
-
-
Virant-Klun, I.1
Leicht, S.2
Hughes, C.3
Krijgsveld, J.4
-
30
-
-
84990957266
-
Quantitative Profiling of Single Formalin Fixed Tumour Sections: Proteomics for translational research
-
Hughes, C. S.; McConechy, M. K.; Cochrane, D. R.; Nazeran, T.; Karnezis, A. N.; Huntsman, D. G.; Morin, G. B. Quantitative Profiling of Single Formalin Fixed Tumour Sections: proteomics for translational research Sci. Rep. 2016, 6, 34949 10.1038/srep34949
-
(2016)
Sci. Rep.
, vol.6
, pp. 34949
-
-
Hughes, C.S.1
McConechy, M.K.2
Cochrane, D.R.3
Nazeran, T.4
Karnezis, A.N.5
Huntsman, D.G.6
Morin, G.B.7
-
31
-
-
84942931451
-
A Comprehensive Proteomics Analysis Reveals a Secretory Path- and Status-Dependent Signature of Exosomes Released from Tumor-Associated Macrophages
-
Zhu, Y.; Chen, X.; Pan, Q.; Wang, Y.; Su, S.; Jiang, C.; Li, Y.; Xu, N.; Wu, L.; Lou, X. et al. A Comprehensive Proteomics Analysis Reveals a Secretory Path- and Status-Dependent Signature of Exosomes Released from Tumor-Associated Macrophages J. Proteome Res. 2015, 14 (10) 4319-4331 10.1021/acs.jproteome.5b00770
-
(2015)
J. Proteome Res.
, vol.14
, Issue.10
, pp. 4319-4331
-
-
Zhu, Y.1
Chen, X.2
Pan, Q.3
Wang, Y.4
Su, S.5
Jiang, C.6
Li, Y.7
Xu, N.8
Wu, L.9
Lou, X.10
-
32
-
-
77952275181
-
B16 as a Mouse Model for Human Melanoma
-
John Wiley & Sons, Inc. Hoboken, NJ, Chapter 20, Unit 20.1. DOI
-
Overwijk, W. W.; Restifo, N. P. B16 as a Mouse Model for Human Melanoma. In Current Protocols in Immunology; John Wiley & Sons, Inc.: Hoboken, NJ, 2001; Chapter 20, Unit 20.1. DOI: 10.1002/0471142735.im2001s39.
-
(2001)
Current Protocols in Immunology
-
-
Overwijk, W.W.1
Restifo, N.P.2
-
33
-
-
84867740805
-
Gene-expression profiles and transcriptional regulatory pathways that underlie the identity and diversity of mouse tissue macrophages
-
Gautier, E. L.; Shay, T.; Miller, J.; Greter, M.; Jakubzick, C.; Ivanov, S.; Helft, J.; Chow, A.; Elpek, K. G.; Gordonov, S. et al. Gene-expression profiles and transcriptional regulatory pathways that underlie the identity and diversity of mouse tissue macrophages Nat. Immunol. 2012, 13 (11) 1118-1128 10.1038/ni.2419
-
(2012)
Nat. Immunol.
, vol.13
, Issue.11
, pp. 1118-1128
-
-
Gautier, E.L.1
Shay, T.2
Miller, J.3
Greter, M.4
Jakubzick, C.5
Ivanov, S.6
Helft, J.7
Chow, A.8
Elpek, K.G.9
Gordonov, S.10
-
34
-
-
84962243105
-
Label-free quantification in ion mobility-enhanced data-independent acquisition proteomics
-
Distler, U.; Kuharev, J.; Navarro, P.; Tenzer, S. Label-free quantification in ion mobility-enhanced data-independent acquisition proteomics Nat. Protoc. 2016, 11 (4) 795-812 10.1038/nprot.2016.042
-
(2016)
Nat. Protoc.
, vol.11
, Issue.4
, pp. 795-812
-
-
Distler, U.1
Kuharev, J.2
Navarro, P.3
Tenzer, S.4
-
35
-
-
84895071750
-
Drift time-specific collision energies enable deep-coverage data-independent acquisition proteomics
-
Distler, U.; Kuharev, J.; Navarro, P.; Levin, Y.; Schild, H.; Tenzer, S. Drift time-specific collision energies enable deep-coverage data-independent acquisition proteomics Nat. Methods 2013, 11 (2) 167-170 10.1038/nmeth.2767
-
(2013)
Nat. Methods
, vol.11
, Issue.2
, pp. 167-170
-
-
Distler, U.1
Kuharev, J.2
Navarro, P.3
Levin, Y.4
Schild, H.5
Tenzer, S.6
-
36
-
-
31644446949
-
Absolute quantification of proteins by LCMSE: A virtue of parallel MS acquisition
-
Silva, J. C.; Gorenstein, M. V.; Li, G.-Z.; Vissers, J. P. C.; Geromanos, S. J. Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition Mol. Cell. Proteomics 2006, 5 (1) 144-156 10.1074/mcp.M500230-MCP200
-
(2006)
Mol. Cell. Proteomics
, vol.5
, Issue.1
, pp. 144-156
-
-
Silva, J.C.1
Gorenstein, M.V.2
Li, G.-Z.3
Vissers, J.P.C.4
Geromanos, S.J.5
-
37
-
-
84874762979
-
The PRoteomics IDEntifications (PRIDE) database and associated tools: Status in 2013
-
Vizcaíno, J. A.; Côté, R. G.; Csordas, A.; Dianes, J. A.; Fabregat, A.; Foster, J. M.; Griss, J.; Alpi, E.; Birim, M.; Contell, J. et al. The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013 Nucleic Acids Res. 2013, 41 (Database issue) D1063-9 10.1093/nar/gks1262
-
(2013)
Nucleic Acids Res.
, vol.41
, Issue.DATABASE ISSUE
, pp. D1063-D1069
-
-
Vizcaíno, J.A.1
Côté, R.G.2
Csordas, A.3
Dianes, J.A.4
Fabregat, A.5
Foster, J.M.6
Griss, J.7
Alpi, E.8
Birim, M.9
Contell, J.10
-
38
-
-
70350728339
-
Spin filter-based sample preparation for shotgun proteomics
-
Liebler, D. C.; Ham, A.-J. L. Spin filter-based sample preparation for shotgun proteomics Nat. Methods 2009, 6 (11) 785-785 10.1038/nmeth1109-785a
-
(2009)
Nat. Methods
, vol.6
, Issue.11
, pp. 785
-
-
Liebler, D.C.1
Ham, A.-J.L.2
-
39
-
-
84969753490
-
Quantitative Evaluation of Filter Aided Sample Preparation (FASP) and Multienzyme Digestion FASP Protocols
-
Wiśniewski, J. R. Quantitative Evaluation of Filter Aided Sample Preparation (FASP) and Multienzyme Digestion FASP Protocols Anal. Chem. 2016, 88 (10) 5438-5443 10.1021/acs.analchem.6b00859
-
(2016)
Anal. Chem.
, vol.88
, Issue.10
, pp. 5438-5443
-
-
Wiśniewski, J.R.1
-
40
-
-
84990227024
-
Sensitivity of mass spectrometry analysis depends on the shape of the filtration unit used for filter aided sample preparation (FASP)
-
Lipecka, J.; Chhuon, C.; Bourderioux, M.; Bessard, M.-A.; van Endert, P.; Edelman, A.; Guerrera, I. C. Sensitivity of mass spectrometry analysis depends on the shape of the filtration unit used for filter aided sample preparation (FASP) Proteomics 2016, 16 (13) 1852-1857 10.1002/pmic.201600103
-
(2016)
Proteomics
, vol.16
, Issue.13
, pp. 1852-1857
-
-
Lipecka, J.1
Chhuon, C.2
Bourderioux, M.3
Bessard, M.-A.4
Van Endert, P.5
Edelman, A.6
Guerrera, I.C.7
-
41
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte, J.; Doolittle, R. F. A simple method for displaying the hydropathic character of a protein J. Mol. Biol. 1982, 157 (1) 105-132 10.1016/0022-2836(82)90515-0
-
(1982)
J. Mol. Biol.
, vol.157
, Issue.1
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
42
-
-
84904406680
-
Tumor-Associated Macrophages: From Mechanisms to Therapy
-
Noy, R.; Pollard, J. W. Tumor-Associated Macrophages: From Mechanisms to Therapy Immunity 2014, 41 (1) 49-61 10.1016/j.immuni.2014.06.010
-
(2014)
Immunity
, vol.41
, Issue.1
, pp. 49-61
-
-
Noy, R.1
Pollard, J.W.2
-
43
-
-
77956976681
-
Macrophage plasticity and interaction with lymphocyte subsets: Cancer as a paradigm
-
Biswas, S. K.; Mantovani, A. Macrophage plasticity and interaction with lymphocyte subsets: cancer as a paradigm Nat. Immunol. 2010, 11 (10) 889-896 10.1038/ni.1937
-
(2010)
Nat. Immunol.
, vol.11
, Issue.10
, pp. 889-896
-
-
Biswas, S.K.1
Mantovani, A.2
-
44
-
-
84965094505
-
Proteasome subtypes and regulators in the processing of antigenic peptides presented by class i molecules of the major histocompatibility complex
-
Vigneron, N.; Van den Eynde, B. J. Proteasome subtypes and regulators in the processing of antigenic peptides presented by class I molecules of the major histocompatibility complex Biomolecules 2014, 4 (4) 994-1025 10.3390/biom4040994
-
(2014)
Biomolecules
, vol.4
, Issue.4
, pp. 994-1025
-
-
Vigneron, N.1
Van Den Eynde, B.J.2
-
45
-
-
84863619846
-
Human macrophages and dendritic cells can equally present MART-1 antigen to CD8(+) T cells after phagocytosis of gamma-irradiated melanoma cells
-
Barrio, M. M.; Abes, R.; Colombo, M.; Pizzurro, G.; Boix, C.; Roberti, M. P.; Gélizé, E.; Rodriguez-Zubieta, M.; Mordoh, J.; Teillaud, J.-L. Human macrophages and dendritic cells can equally present MART-1 antigen to CD8(+) T cells after phagocytosis of gamma-irradiated melanoma cells PLoS One 2012, 7 (7) e40311 10.1371/journal.pone.0040311
-
(2012)
PLoS One
, vol.7
, Issue.7
, pp. e40311
-
-
Barrio, M.M.1
Abes, R.2
Colombo, M.3
Pizzurro, G.4
Boix, C.5
Roberti, M.P.6
Gélizé, E.7
Rodriguez-Zubieta, M.8
Mordoh, J.9
Teillaud, J.-L.10
-
46
-
-
85027172512
-
Colony-Stimulating Factor 1 Receptor Blockade Inhibits Tumor Growth by Altering the Polarization of Tumor-Associated Macrophages in Hepatocellular Carcinoma
-
Ao, J.-Y.; Zhu, X.-D.; Chai, Z.-T.; Cai, H.; Zhang, Y.-Y.; Zhang, K.-Z.; Kong, L.-Q.; Zhang, N.; Ye, B.-G.; Ma, D.-N. Colony-Stimulating Factor 1 Receptor Blockade Inhibits Tumor Growth by Altering the Polarization of Tumor-Associated Macrophages in Hepatocellular Carcinoma Mol. Cancer Ther. 2017, 16 (8) 1544 10.1158/1535-7163.MCT-16-0866
-
(2017)
Mol. Cancer Ther.
, vol.16
, Issue.8
, pp. 1544
-
-
Ao, J.-Y.1
Zhu, X.-D.2
Chai, Z.-T.3
Cai, H.4
Zhang, Y.-Y.5
Zhang, K.-Z.6
Kong, L.-Q.7
Zhang, N.8
Ye, B.-G.9
Ma, D.-N.10
-
47
-
-
84874877157
-
Control of tumor-associated macrophage alternative activation by macrophage migration inhibitory factor
-
Yaddanapudi, K.; Putty, K.; Rendon, B. E.; Lamont, G. J.; Faughn, J. D.; Satoskar, A.; Lasnik, A.; Eaton, J. W.; Mitchell, R. A. Control of tumor-associated macrophage alternative activation by macrophage migration inhibitory factor J. Immunol. 2013, 190 (6) 2984-2993 10.4049/jimmunol.1201650
-
(2013)
J. Immunol.
, vol.190
, Issue.6
, pp. 2984-2993
-
-
Yaddanapudi, K.1
Putty, K.2
Rendon, B.E.3
Lamont, G.J.4
Faughn, J.D.5
Satoskar, A.6
Lasnik, A.7
Eaton, J.W.8
Mitchell, R.A.9
-
48
-
-
84873292533
-
Sialoadhesin - A macrophage-restricted marker of immunoregulation and inflammation
-
O'Neill, A. S. G.; van den Berg, T. K.; Mullen, G. E. D. Sialoadhesin-a macrophage-restricted marker of immunoregulation and inflammation Immunology 2013, 138 (3) 198-207 10.1111/imm.12042
-
(2013)
Immunology
, vol.138
, Issue.3
, pp. 198-207
-
-
O'Neill, A.S.G.1
Van Den Berg, T.K.2
Mullen, G.E.D.3
-
49
-
-
85017600502
-
Comprehensive Proteomics Analysis Reveals Metabolic Reprogramming of Tumor-Associated Macrophages Stimulated by the Tumor Microenvironment
-
Liu, D.; Chang, C.; Lu, N.; Wang, X.; Lu, Q.; Ren, X.; Ren, P.; Zhao, D.; Wang, L.; Zhu, Y. Comprehensive Proteomics Analysis Reveals Metabolic Reprogramming of Tumor-Associated Macrophages Stimulated by the Tumor Microenvironment J. Proteome Res. 2017, 16 (1) 288 10.1021/acs.jproteome.6b00604
-
(2017)
J. Proteome Res.
, vol.16
, Issue.1
, pp. 288
-
-
Liu, D.1
Chang, C.2
Lu, N.3
Wang, X.4
Lu, Q.5
Ren, X.6
Ren, P.7
Zhao, D.8
Wang, L.9
Zhu, Y.10
-
50
-
-
84922609359
-
Myeloid-derived growth factor (C19orf10) mediates cardiac repair following myocardial infarction
-
Korf-Klingebiel, M.; Reboll, M. R.; Klede, S.; Brod, T.; Pich, A.; Polten, F.; Napp, L. C.; Bauersachs, J.; Ganser, A.; Brinkmann, E. et al. Myeloid-derived growth factor (C19orf10) mediates cardiac repair following myocardial infarction Nat. Med. 2015, 21 (2) 140-149 10.1038/nm.3778
-
(2015)
Nat. Med.
, vol.21
, Issue.2
, pp. 140-149
-
-
Korf-Klingebiel, M.1
Reboll, M.R.2
Klede, S.3
Brod, T.4
Pich, A.5
Polten, F.6
Napp, L.C.7
Bauersachs, J.8
Ganser, A.9
Brinkmann, E.10
-
51
-
-
84937411087
-
Complement and macrophage crosstalk during process of angiogenesis in tumor progression
-
Khan, M. A.; Assiri, A. M.; Broering, D. C. Complement and macrophage crosstalk during process of angiogenesis in tumor progression J. Biomed. Sci. 2015, 22 (1) 58 10.1186/s12929-015-0151-1
-
(2015)
J. Biomed. Sci.
, vol.22
, Issue.1
, pp. 58
-
-
Khan, M.A.1
Assiri, A.M.2
Broering, D.C.3
-
52
-
-
84946865957
-
Comparison of different sample preparation protocols reveals lysis buffer-specific extraction biases in gram-negative bacteria and human cells
-
Glatter, T.; Ahrné, E.; Schmidt, A. Comparison of different sample preparation protocols reveals lysis buffer-specific extraction biases in gram-negative bacteria and human cells J. Proteome Res. 2015, 14 (11) 4472-4485 10.1021/acs.jproteome.5b00654
-
(2015)
J. Proteome Res.
, vol.14
, Issue.11
, pp. 4472-4485
-
-
Glatter, T.1
Ahrné, E.2
Schmidt, A.3
-
53
-
-
84960532588
-
Snapp: Simplified nanoproteomics platform for reproducible global proteomic analysis of nanogram protein quantities
-
Huang, E. L.; Piehowski, P. D.; Orton, D. J.; Moore, R. J.; Qian, W. J.; Casey, C. P.; Sun, X.; Dey, S. K.; Burnum-Johnson, K. E.; Smith, R. D. Snapp: Simplified nanoproteomics platform for reproducible global proteomic analysis of nanogram protein quantities Endocrinology 2016, 157 (3) 1307-1314 10.1210/en.2015-1821
-
(2016)
Endocrinology
, vol.157
, Issue.3
, pp. 1307-1314
-
-
Huang, E.L.1
Piehowski, P.D.2
Orton, D.J.3
Moore, R.J.4
Qian, W.J.5
Casey, C.P.6
Sun, X.7
Dey, S.K.8
Burnum-Johnson, K.E.9
Smith, R.D.10
-
54
-
-
80053584632
-
Proteomic reactors and their applications in biology
-
Zhou, H.; Ning, Z.; Wang, F.; Seebun, D.; Figeys, D. Proteomic reactors and their applications in biology FEBS J. 2011, 278 (20) 3796-3806 10.1111/j.1742-4658.2011.08292.x
-
(2011)
FEBS J.
, vol.278
, Issue.20
, pp. 3796-3806
-
-
Zhou, H.1
Ning, Z.2
Wang, F.3
Seebun, D.4
Figeys, D.5
-
55
-
-
84939991970
-
Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps
-
Guo, T.; Kouvonen, P.; Koh, C. C.; Gillet, L. C.; Wolski, W. E.; Röst, H. L.; Rosenberger, G.; Collins, B. C.; Blum, L. C.; Gillessen, S. et al. Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps Nat. Med. 2015, 21 (4) 407-413 10.1038/nm.3807
-
(2015)
Nat. Med.
, vol.21
, Issue.4
, pp. 407-413
-
-
Guo, T.1
Kouvonen, P.2
Koh, C.C.3
Gillet, L.C.4
Wolski, W.E.5
Röst, H.L.6
Rosenberger, G.7
Collins, B.C.8
Blum, L.C.9
Gillessen, S.10
-
56
-
-
84973544398
-
Reproducible Tissue Homogenization and Protein Extraction for Quantitative Proteomics Using MicroPestle-Assisted Pressure-Cycling Technology
-
Shao, S.; Guo, T.; Gross, V.; Lazarev, A.; Koh, C. C.; Gillessen, S.; Joerger, M.; Jochum, W.; Aebersold, R. Reproducible Tissue Homogenization and Protein Extraction for Quantitative Proteomics Using MicroPestle-Assisted Pressure-Cycling Technology J. Proteome Res. 2016, 15 (6) 1821-1829 10.1021/acs.jproteome.5b01136
-
(2016)
J. Proteome Res.
, vol.15
, Issue.6
, pp. 1821-1829
-
-
Shao, S.1
Guo, T.2
Gross, V.3
Lazarev, A.4
Koh, C.C.5
Gillessen, S.6
Joerger, M.7
Jochum, W.8
Aebersold, R.9
-
57
-
-
85006913826
-
Spatially-Resolved Proteomics: Rapid Quantitative Analysis of Laser Capture Microdissected Alveolar Tissue Samples
-
Clair, G.; Piehowski, P. D.; Nicola, T.; Kitzmiller, J. A.; Huang, E. L.; Zink, E. M.; Sontag, R. L.; Orton, D. J.; Moore, R. J.; Carson, J. P. et al. Spatially-Resolved Proteomics: Rapid Quantitative Analysis of Laser Capture Microdissected Alveolar Tissue Samples Sci. Rep. 2016, 6, 39223 10.1038/srep39223
-
(2016)
Sci. Rep.
, vol.6
, pp. 39223
-
-
Clair, G.1
Piehowski, P.D.2
Nicola, T.3
Kitzmiller, J.A.4
Huang, E.L.5
Zink, E.M.6
Sontag, R.L.7
Orton, D.J.8
Moore, R.J.9
Carson, J.P.10
-
58
-
-
85010901048
-
Tumour-associated macrophages as treatment targets in oncology
-
Mantovani, A.; Marchesi, F.; Malesci, A.; Laghi, L.; Allavena, P. Tumour-associated macrophages as treatment targets in oncology Nat. Rev. Clin. Oncol. 2017, 14 (7) 399-416 10.1038/nrclinonc.2016.217
-
(2017)
Nat. Rev. Clin. Oncol.
, vol.14
, Issue.7
, pp. 399-416
-
-
Mantovani, A.1
Marchesi, F.2
Malesci, A.3
Laghi, L.4
Allavena, P.5
|