-
1
-
-
84947488073
-
Identification of lactic acid bacteria isolated from wine using real-time PCR
-
Kantor A, Kluz M, Puchalski C, Terentjeva M, Kacaniova M (2016) Identification of lactic acid bacteria isolated from wine using real-time PCR. J Environ Sci Health B 51(1):52–56. 10.1080/03601234.2015.1080497
-
(2016)
J Environ Sci Health B
, vol.51
, Issue.1
, pp. 52-56
-
-
Kantor, A.1
Kluz, M.2
Puchalski, C.3
Terentjeva, M.4
Kacaniova, M.5
-
2
-
-
84930680523
-
Identification of ecotype-specific marker genes for categorization of beer-spoiling Lactobacillus brevis
-
Behr J, Geissler AJ, Preissler P, Ehrenreich A, Angelov A, Vogel RF (2015) Identification of ecotype-specific marker genes for categorization of beer-spoiling Lactobacillus brevis. Food Microbiol 51:130–138. 10.1016/j.fm.2015.05.015
-
(2015)
Food Microbiol
, vol.51
, pp. 130-138
-
-
Behr, J.1
Geissler, A.J.2
Preissler, P.3
Ehrenreich, A.4
Angelov, A.5
Vogel, R.F.6
-
3
-
-
84899695744
-
Evolution of bacterial consortia in spontaneously started rye sourdoughs during two months of daily propagation
-
Bessmeltseva M, Viiard E, Simm J, Paalme T, Sarand I (2014) Evolution of bacterial consortia in spontaneously started rye sourdoughs during two months of daily propagation. PLoS ONE 9(4):e95449. 10.1371/journal.pone.0095449
-
(2014)
PLoS ONE
, vol.9
, Issue.4
-
-
Bessmeltseva, M.1
Viiard, E.2
Simm, J.3
Paalme, T.4
Sarand, I.5
-
4
-
-
84920927517
-
Identification and characterization of wild Lactobacilli and Pediococci from spontaneously fermented mountain cheese
-
Carafa I, Nardin T, Larcher R, Viola R, Tuohy K, Franciosi E (2015) Identification and characterization of wild Lactobacilli and Pediococci from spontaneously fermented mountain cheese. Food Microbiol 48:123–132. 10.1016/j.fm.2014.12.003
-
(2015)
Food Microbiol
, vol.48
, pp. 123-132
-
-
Carafa, I.1
Nardin, T.2
Larcher, R.3
Viola, R.4
Tuohy, K.5
Franciosi, E.6
-
5
-
-
79959841282
-
Low-diversity bacterial community in the gut of the fruitfly Drosophila melanogaster
-
Wong CN, Ng P, Douglas AE (2011) Low-diversity bacterial community in the gut of the fruitfly Drosophila melanogaster. Environ Microbiol 13(7):1889–1900. 10.1111/j.1462-2920.2011.02511.x
-
(2011)
Environ Microbiol
, vol.13
, Issue.7
, pp. 1889-1900
-
-
Wong, C.N.1
Ng, P.2
Douglas, A.E.3
-
7
-
-
0037221075
-
Characterization of intestinal Lactobacilli as putative probiotic candidates
-
Annuk H, Shchepetova J, Kullisaar T, Songisepp E, Zilmer M, Mikelsaar M (2003) Characterization of intestinal Lactobacilli as putative probiotic candidates. J Appl Microbiol 94(3):403–412
-
(2003)
J Appl Microbiol
, vol.94
, Issue.3
, pp. 403-412
-
-
Annuk, H.1
Shchepetova, J.2
Kullisaar, T.3
Songisepp, E.4
Zilmer, M.5
Mikelsaar, M.6
-
8
-
-
84878954582
-
Strain-specific probiotics properties of Lactobacillus fermentum, Lactobacillus plantarum and Lactobacillus brevis isolates from Brazilian food products
-
Ramos CL, Thorsen L, Schwan RF, Jespersen L (2013) Strain-specific probiotics properties of Lactobacillus fermentum, Lactobacillus plantarum and Lactobacillus brevis isolates from Brazilian food products. Food Microbiol 36(1):22–29
-
(2013)
Food Microbiol
, vol.36
, Issue.1
, pp. 22-29
-
-
Ramos, C.L.1
Thorsen, L.2
Schwan, R.F.3
Jespersen, L.4
-
9
-
-
84892600288
-
Effects of intake of pickles containing Lactobacillus brevis on immune activity and bowel symptoms in female students
-
Takii Y, Nishimura S, Yoshida-Yamamoto S, Kobayashi Y, Nagayoshi E (2013) Effects of intake of pickles containing Lactobacillus brevis on immune activity and bowel symptoms in female students. J Nutr Sci Vitaminol 59(5):402–411
-
(2013)
J Nutr Sci Vitaminol
, vol.59
, Issue.5
, pp. 402-411
-
-
Takii, Y.1
Nishimura, S.2
Yoshida-Yamamoto, S.3
Kobayashi, Y.4
Nagayoshi, E.5
-
12
-
-
0029813798
-
Effect of oral administration of Lactobacillus brevis subsp. coagulans on interferon-α producing capacity of humans
-
Kishi A, Kazuko U, Matsubara Y, Okuda C, Kishida T (1996) Effect of oral administration of Lactobacillus brevis subsp. coagulans on interferon-α producing capacity of humans. J Am Coll Nutr 15(4):408–412
-
(1996)
J Am Coll Nutr
, vol.15
, Issue.4
, pp. 408-412
-
-
Kishi, A.1
Kazuko, U.2
Matsubara, Y.3
Okuda, C.4
Kishida, T.5
-
13
-
-
77951159131
-
A ready-to-use antifungal starter culture improves the shelf life of packaged bread
-
Gerez CL, Torino MI, Obregozo MD, Font de Valdez G (2010) A ready-to-use antifungal starter culture improves the shelf life of packaged bread. J Food Prot 73(4):758–762
-
(2010)
J Food Prot
, vol.73
, Issue.4
, pp. 758-762
-
-
Gerez, C.L.1
Torino, M.I.2
Obregozo, M.D.3
Font de Valdez, G.4
-
14
-
-
77956190099
-
Bacterial species associated with traditional starter cultures used for fermented bamboo shoot production in Manipur state of India
-
Jeyaram K, Romi W, Singh TA, Devi AR, Devi SS (2010) Bacterial species associated with traditional starter cultures used for fermented bamboo shoot production in Manipur state of India. Int J Food Microbiol 143(1–2):1–8
-
(2010)
Int J Food Microbiol
, vol.143
, Issue.1-2
, pp. 1-8
-
-
Jeyaram, K.1
Romi, W.2
Singh, T.A.3
Devi, A.R.4
Devi, S.S.5
-
15
-
-
0038755089
-
Use of starter cultures of lactic acid bacteria and yeasts in the preparation of togwa, a Tanzanian fermented food
-
Mugula JK, Narvhus JA, Sorhaug T (2003) Use of starter cultures of lactic acid bacteria and yeasts in the preparation of togwa, a Tanzanian fermented food. Int J Food Microbiol 83(3):307–318
-
(2003)
Int J Food Microbiol
, vol.83
, Issue.3
, pp. 307-318
-
-
Mugula, J.K.1
Narvhus, J.A.2
Sorhaug, T.3
-
16
-
-
26644441223
-
Characterization of Lactobacillus strains and monitoring by RAPD-PCR in controlled fermentations of “Almagro” eggplants
-
Sesena S, Sanchez I, Palop L (2005) Characterization of Lactobacillus strains and monitoring by RAPD-PCR in controlled fermentations of “Almagro” eggplants. Int J Food Microbiol 104(3):325–335
-
(2005)
Int J Food Microbiol
, vol.104
, Issue.3
, pp. 325-335
-
-
Sesena, S.1
Sanchez, I.2
Palop, L.3
-
17
-
-
56349166990
-
Evidence of horizontal transfer as origin of strain to strain variation of the tyramine production trait in Lactobacillus brevis
-
Coton E, Coton M (2009) Evidence of horizontal transfer as origin of strain to strain variation of the tyramine production trait in Lactobacillus brevis. Food Microbiol 26(1):52–57. 10.1016/j.fm.2008.07.009
-
(2009)
Food Microbiol
, vol.26
, Issue.1
, pp. 52-57
-
-
Coton, E.1
Coton, M.2
-
18
-
-
84893489351
-
Putrescine production via the ornithine decarboxylation pathway improves the acid stress survival of Lactobacillus brevis and is part of a horizontally transferred acid resistance locus
-
Romano A, Ladero V, Alvarez MA, Lucas PM (2014) Putrescine production via the ornithine decarboxylation pathway improves the acid stress survival of Lactobacillus brevis and is part of a horizontally transferred acid resistance locus. Int J Food Microbiol 175:14–19. 10.1016/j.ijfoodmicro.2014.01.009
-
(2014)
Int J Food Microbiol
, vol.175
, pp. 14-19
-
-
Romano, A.1
Ladero, V.2
Alvarez, M.A.3
Lucas, P.M.4
-
19
-
-
63049115214
-
Comparative genomics of lactic acid bacteria reveals a niche-specific gene set
-
O’Sullivan O, O’Callaghan J, Sangrador-Vegas A, McAuliffe O, Slattery L, Kaleta P, Callanan M, Fitzgerald GF, Ross RP, Beresford T (2009) Comparative genomics of lactic acid bacteria reveals a niche-specific gene set. BMC Microbiol 9:50
-
(2009)
BMC Microbiol
, vol.9
, pp. 50
-
-
O’Sullivan, O.1
O’Callaghan, J.2
Sangrador-Vegas, A.3
McAuliffe, O.4
Slattery, L.5
Kaleta, P.6
Callanan, M.7
Fitzgerald, G.F.8
Ross, R.P.9
Beresford, T.10
-
20
-
-
84982980716
-
Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats
-
Martino ME, Bayjanov JR, Caffrey BE, Wels M, Joncour P, Hughes S, Gillet B, Kleerebezem M, van Hijum SA, Leulier F (2016) Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats. Environ Microbiol 18(12):4974–4989
-
(2016)
Environ Microbiol
, vol.18
, Issue.12
, pp. 4974-4989
-
-
Martino, M.E.1
Bayjanov, J.R.2
Caffrey, B.E.3
Wels, M.4
Joncour, P.5
Hughes, S.6
Gillet, B.7
Kleerebezem, M.8
van Hijum, S.A.9
Leulier, F.10
-
21
-
-
84976871868
-
GenBank
-
Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW (2016) GenBank. Nucleic Acids Res 44(D1):D67–D72
-
(2016)
Nucleic Acids Res
, vol.44
, Issue.D1
, pp. D67-D72
-
-
Clark, K.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Sayers, E.W.5
-
22
-
-
84871179778
-
The GenBank nucleic acid sequence database
-
Burks C, Fickett JW, Goad WB, Kanehisa M, Lewitter FI, Rindone WP, Swindell CD, Tung CS, Bilofsky HS (1985) The GenBank nucleic acid sequence database. Comput Appl Biosci 1(4):225–233
-
(1985)
Comput Appl Biosci
, vol.1
, Issue.4
, pp. 225-233
-
-
Burks, C.1
Fickett, J.W.2
Goad, W.B.3
Kanehisa, M.4
Lewitter, F.I.5
Rindone, W.P.6
Swindell, C.D.7
Tung, C.S.8
Bilofsky, H.S.9
-
23
-
-
40549120596
-
The RAST server: rapid annotations using subsystems technology
-
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O (2008) The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
DeJongh, M.4
Disz, T.5
Edwards, R.A.6
Formsma, K.7
Gerdes, S.8
Glass, E.M.9
Kubal, M.10
Meyer, F.11
Olsen, G.J.12
Olson, R.13
Osterman, A.L.14
Overbeek, R.A.15
McNeil, L.K.16
Paarmann, D.17
Paczian, T.18
Parrello, B.19
Pusch, G.D.20
Reich, C.21
Stevens, R.22
Vassieva, O.23
Vonstein, V.24
Wilke, A.25
Zagnitko, O.26
more..
-
24
-
-
84891804612
-
The SEED and the rapid annotation of microbial genomes using subsystems technology (RAST)
-
Overbeek R, Olson R, Pusch GD, Olsen GJ, Davis JJ, Disz T, Edwards RA, Gerdes S, Parrello B, Shukla M, Vonstein V, Wattam AR, Xia F, Stevens R (2014) The SEED and the rapid annotation of microbial genomes using subsystems technology (RAST). Nucleic Acids Res 42(Database issue):D206–D214
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.Database issue
, pp. D206-D214
-
-
Overbeek, R.1
Olson, R.2
Pusch, G.D.3
Olsen, G.J.4
Davis, J.J.5
Disz, T.6
Edwards, R.A.7
Gerdes, S.8
Parrello, B.9
Shukla, M.10
Vonstein, V.11
Wattam, A.R.12
Xia, F.13
Stevens, R.14
-
25
-
-
0033965855
-
The TIGR gene indices: reconstruction and representation of expressed gene sequences
-
Quackenbush J, Liang F, Holt I, Pertea G, Upton J (2000) The TIGR gene indices: reconstruction and representation of expressed gene sequences. Nucleic Acids Res 28(1):141–145
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.1
, pp. 141-145
-
-
Quackenbush, J.1
Liang, F.2
Holt, I.3
Pertea, G.4
Upton, J.5
-
26
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22(22):4673–4680
-
(1994)
Nucleic Acids Res
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
27
-
-
75149150388
-
TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses
-
Stover BC, Muller KF (2010) TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses. BMC Bioinform 11:7
-
(2010)
BMC Bioinform
, vol.11
, pp. 7
-
-
Stover, B.C.1
Muller, K.F.2
-
28
-
-
0033990046
-
Phylogenetic analysis using PHYLIP
-
Retief JD (2000) Phylogenetic analysis using PHYLIP. Methods Mol Biol 132:243–258
-
(2000)
Methods Mol Biol
, vol.132
, pp. 243-258
-
-
Retief, J.D.1
-
29
-
-
84862503656
-
Gegenees: fragmented alignment of multiple genomes for determining phylogenomic distances and genetic signatures unique for specified target groups
-
Agren J, Sundstrom A, Hafstrom T, Segerman B (2012) Gegenees: fragmented alignment of multiple genomes for determining phylogenomic distances and genetic signatures unique for specified target groups. PLoS ONE 7(6):e39107
-
(2012)
PLoS ONE
, vol.7
, Issue.6
-
-
Agren, J.1
Sundstrom, A.2
Hafstrom, T.3
Segerman, B.4
-
30
-
-
3543051830
-
Mauve: multiple alignment of conserved genomic sequence with rearrangements
-
Darling AC, Mau B, Blattner FR, Perna NT (2004) Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res 14(7):1394–1403
-
(2004)
Genome Res
, vol.14
, Issue.7
, pp. 1394-1403
-
-
Darling, A.C.1
Mau, B.2
Blattner, F.R.3
Perna, N.T.4
-
31
-
-
36549060482
-
Analyzing patterns of microbial evolution using the mauve genome alignment system
-
Darling AE, Treangen TJ, Messeguer X, Perna NT (2007) Analyzing patterns of microbial evolution using the mauve genome alignment system. Methods Mol Biol 396:135–152
-
(2007)
Methods Mol Biol
, vol.396
, pp. 135-152
-
-
Darling, A.E.1
Treangen, T.J.2
Messeguer, X.3
Perna, N.T.4
-
32
-
-
84875944086
-
CMG-biotools, a free workbench for basic comparative microbial genomics
-
Vesth T, Lagesen K, Acar O, Ussery D (2013) CMG-biotools, a free workbench for basic comparative microbial genomics. PLoS ONE 8(4):e60120
-
(2013)
PLoS ONE
, vol.8
, Issue.4
-
-
Vesth, T.1
Lagesen, K.2
Acar, O.3
Ussery, D.4
-
33
-
-
73149098333
-
Shifting the genomic gold standard for the prokaryotic species definition
-
Richter M, Rossello-Mora R (2009) Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 106(45):19126–19131
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.45
, pp. 19126-19131
-
-
Richter, M.1
Rossello-Mora, R.2
-
34
-
-
84962742235
-
The Identification of novel diagnostic marker genes for the detection of beer spoiling Pediococcus damnosus strains using the BlAst diagnostic gene findEr
-
Behr J, Geissler AJ, Schmid J, Zehe A, Vogel RF (2016) The Identification of novel diagnostic marker genes for the detection of beer spoiling Pediococcus damnosus strains using the BlAst diagnostic gene findEr. PLoS ONE 11(3):e0152747
-
(2016)
PLoS ONE
, vol.11
, Issue.3
-
-
Behr, J.1
Geissler, A.J.2
Schmid, J.3
Zehe, A.4
Vogel, R.F.5
-
35
-
-
13444262384
-
CDD: a conserved domain database for protein classification
-
Marchler-Bauer A, Anderson JB, Cherukuri PF, DeWeese-Scott C, Geer LY, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Liebert CA, Liu C, Lu F, Marchler GH, Mullokandov M, Shoemaker BA, Simonyan V, Song JS, Thiessen PA, Yamashita RA, Yin JJ, Zhang D, Bryant SH (2005) CDD: a conserved domain database for protein classification. Nucleic Acids Res 33(Database issue):D192–D196
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.Database issue
, pp. D192-D196
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Cherukuri, P.F.3
DeWeese-Scott, C.4
Geer, L.Y.5
Gwadz, M.6
He, S.7
Hurwitz, D.I.8
Jackson, J.D.9
Ke, Z.10
Lanczycki, C.J.11
Liebert, C.A.12
Liu, C.13
Lu, F.14
Marchler, G.H.15
Mullokandov, M.16
Shoemaker, B.A.17
Simonyan, V.18
Song, J.S.19
Thiessen, P.A.20
Yamashita, R.A.21
Yin, J.J.22
Zhang, D.23
Bryant, S.H.24
more..
-
36
-
-
85016162260
-
CDD/SPARCLE: functional classification of proteins via subfamily domain architectures
-
Marchler-Bauer A, Bo Y, Han L, He J, Lanczycki CJ, Lu S, Chitsaz F, Derbyshire MK, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Lu F, Marchler GH, Song JS, Thanki N, Wang Z, Yamashita RA, Zhang D, Zheng C, Geer LY, Bryant SH (2017) CDD/SPARCLE: functional classification of proteins via subfamily domain architectures. Nucleic Acids Res 45(D1):D200–D203
-
(2017)
Nucleic Acids Res
, vol.45
, Issue.D1
, pp. D200-D203
-
-
Marchler-Bauer, A.1
Bo, Y.2
Han, L.3
He, J.4
Lanczycki, C.J.5
Lu, S.6
Chitsaz, F.7
Derbyshire, M.K.8
Geer, R.C.9
Gonzales, N.R.10
Gwadz, M.11
Hurwitz, D.I.12
Lu, F.13
Marchler, G.H.14
Song, J.S.15
Thanki, N.16
Wang, Z.17
Yamashita, R.A.18
Zhang, D.19
Zheng, C.20
Geer, L.Y.21
Bryant, S.H.22
more..
-
37
-
-
3242887157
-
CD-Search: protein domain annotations on the fly
-
Marchler-Bauer A, Bryant SH (2004) CD-Search: protein domain annotations on the fly. Nucleic Acids Res 32(Web Server issue):W327–W331
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.Web Server issue
, pp. W327-W331
-
-
Marchler-Bauer, A.1
Bryant, S.H.2
-
38
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215(3):403–410
-
(1990)
J Mol Biol
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
39
-
-
74049108922
-
BLAST+: architecture and applications
-
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL (2009) BLAST+: architecture and applications. BMC Bioinform 10:421
-
(2009)
BMC Bioinform
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
Bealer, K.6
Madden, T.L.7
-
40
-
-
85016153986
-
UniProt: the universal protein knowledgebase
-
Consortium TU (2017) UniProt: the universal protein knowledgebase. Nucleic Acids Res 45(D1):D158–D169
-
(2017)
Nucleic Acids Res
, vol.45
, Issue.D1
, pp. D158-D169
-
-
Consortium, T.U.1
-
41
-
-
0034666108
-
STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene
-
Snel B, Lehmann G, Bork P, Huynen MA (2000) STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene. Nucleic Acids Res 28(18):3442–3444
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.18
, pp. 3442-3444
-
-
Snel, B.1
Lehmann, G.2
Bork, P.3
Huynen, M.A.4
-
42
-
-
84941051170
-
STRING v10: protein-protein interaction networks, integrated over the tree of life
-
Szklarczyk D, Franceschini A, Wyder S, Forslund K, Heller D, Huerta-Cepas J, Simonovic M, Roth A, Santos A, Tsafou KP, Kuhn M, Bork P, Jensen LJ, von Mering C (2015) STRING v10: protein-protein interaction networks, integrated over the tree of life. Nucleic Acids Res 43(Database issue):D447–D452
-
(2015)
Nucleic Acids Res
, vol.43
, Issue.Database issue
, pp. D447-D452
-
-
Szklarczyk, D.1
Franceschini, A.2
Wyder, S.3
Forslund, K.4
Heller, D.5
Huerta-Cepas, J.6
Simonovic, M.7
Roth, A.8
Santos, A.9
Tsafou, K.P.10
Kuhn, M.11
Bork, P.12
Jensen, L.J.13
von Mering, C.14
-
43
-
-
0033982936
-
KEGG: kyoto encyclopedia of genes and genomes
-
Kanehisa M, Goto S (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28(1):27–30
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.1
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
44
-
-
84891760956
-
Data, information, knowledge and principle: back to metabolism in KEGG
-
Kanehisa M, Goto S, Sato Y, Kawashima M, Furumichi M, Tanabe M (2014) Data, information, knowledge and principle: back to metabolism in KEGG. Nucleic Acids Res 42(Database issue):D199–D205
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.Database issue
, pp. D199-D205
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Kawashima, M.4
Furumichi, M.5
Tanabe, M.6
-
45
-
-
48449090785
-
KEGG Atlas mapping for global analysis of metabolic pathways
-
Okuda S, Yamada T, Hamajima M, Itoh M, Katayama T, Bork P, Goto S, Kanehisa M (2008) KEGG Atlas mapping for global analysis of metabolic pathways. Nucleic Acids Res 36(Web Server issue):W423–W426
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.Web Server issue
, pp. W423-W426
-
-
Okuda, S.1
Yamada, T.2
Hamajima, M.3
Itoh, M.4
Katayama, T.5
Bork, P.6
Goto, S.7
Kanehisa, M.8
-
46
-
-
84946889766
-
Anvi’o: an advanced analysis and visualization platform for ‘omics data
-
Eren AM, Esen OC, Quince C, Vineis JH, Morrison HG, Sogin ML, Delmont TO (2015) Anvi’o: an advanced analysis and visualization platform for ‘omics data. PeerJ 3:e1319
-
(2015)
PeerJ
, vol.3
-
-
Eren, A.M.1
Esen, O.C.2
Quince, C.3
Vineis, J.H.4
Morrison, H.G.5
Sogin, M.L.6
Delmont, T.O.7
-
47
-
-
84867018919
-
Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation
-
Broadbent JR, Neeno-Eckwall EC, Stahl B, Tandee K, Cai H, Morovic W, Horvath P, Heidenreich J, Perna NT, Barrangou R, Steele JL (2012) Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation. BMC Genomics 13:533
-
(2012)
BMC Genomics
, vol.13
, pp. 533
-
-
Broadbent, J.R.1
Neeno-Eckwall, E.C.2
Stahl, B.3
Tandee, K.4
Cai, H.5
Morovic, W.6
Horvath, P.7
Heidenreich, J.8
Perna, N.T.9
Barrangou, R.10
Steele, J.L.11
-
48
-
-
84904512059
-
A comparative pan-genome perspective of niche-adaptable cell-surface protein phenotypes in Lactobacillus rhamnosus
-
Kant R, Rintahaka J, Yu X, Sigvart-Mattila P, Paulin L, Mecklin JP, Saarela M, Palva A, von Ossowski I (2014) A comparative pan-genome perspective of niche-adaptable cell-surface protein phenotypes in Lactobacillus rhamnosus. PLoS ONE 9(7):e102762
-
(2014)
PLoS ONE
, vol.9
, Issue.7
-
-
Kant, R.1
Rintahaka, J.2
Yu, X.3
Sigvart-Mattila, P.4
Paulin, L.5
Mecklin, J.P.6
Saarela, M.7
Palva, A.8
von Ossowski, I.9
-
49
-
-
80052250365
-
Genomic analysis reveals Lactobacillus sanfranciscensis as stable element in traditional sourdoughs
-
Vogel RF, Pavlovic M, Ehrmann MA, Wiezer A, Liesegang H, Offschanka S, Voget S, Angelov A, Bocker G, Liebl W (2011) Genomic analysis reveals Lactobacillus sanfranciscensis as stable element in traditional sourdoughs. Microbial Cell Fact 10(Suppl 1):S6
-
(2011)
Microbial Cell Fact
, vol.10
, pp. S6
-
-
Vogel, R.F.1
Pavlovic, M.2
Ehrmann, M.A.3
Wiezer, A.4
Liesegang, H.5
Offschanka, S.6
Voget, S.7
Angelov, A.8
Bocker, G.9
Liebl, W.10
-
50
-
-
25144484732
-
Isolation of a hop-sensitive variant of Lactobacillus lindneri and identification of genetic markers for beer spoilage ability of lactic acid bacteria
-
Suzuki K, Iijima K, Ozaki K, Yamashita H (2005) Isolation of a hop-sensitive variant of Lactobacillus lindneri and identification of genetic markers for beer spoilage ability of lactic acid bacteria. Appl Environ Microbiol 71(9):5089–5097
-
(2005)
Appl Environ Microbiol
, vol.71
, Issue.9
, pp. 5089-5097
-
-
Suzuki, K.1
Iijima, K.2
Ozaki, K.3
Yamashita, H.4
-
51
-
-
85060965525
-
Genomic diversity of Lactobacillus sanfranciscensis
-
The Netherlands
-
Vogel RF, Celano G, Minervini F, Gobbetti M, Geissler AJ (2017) Genomic diversity of Lactobacillus sanfranciscensis. Paper presented at the book of abstracts, 12th International symposium on lactic acid bacteria, Egmond aan Zee, The Netherlands
-
(2017)
Paper Presented at the Book of Abstracts, 12Th International Symposium on Lactic Acid Bacteria, Egmond Aan Zee
-
-
Vogel, R.F.1
Celano, G.2
Minervini, F.3
Gobbetti, M.4
Geissler, A.J.5
-
52
-
-
85060967046
-
Lactobacilllus sanfranciscensis and Lactobacillus lindneri
-
Bari, Italy
-
Celano G, Geissler AJ, Minervini F, Gobbetti M, Vogel RF (2017) Lactobacilllus sanfranciscensis and Lactobacillus lindneri. Paper presented at the book of abstracts, 4th International symposium on microbial diversity, Bari, Italy
-
(2017)
Paper Presented at the Book of Abstracts, 4Th International Symposium on Microbial Diversity
-
-
Celano, G.1
Geissler, A.J.2
Minervini, F.3
Gobbetti, M.4
Vogel, R.F.5
-
53
-
-
84984985713
-
Advances in the genomics and metabolomics of dairy lactobacilli: a review
-
Stefanovic E, Fitzgerald G, McAuliffe O (2017) Advances in the genomics and metabolomics of dairy lactobacilli: a review. Food Microbiol 61:33–49
-
(2017)
Food Microbiol
, vol.61
, pp. 33-49
-
-
Stefanovic, E.1
Fitzgerald, G.2
McAuliffe, O.3
-
55
-
-
84899923672
-
Horizontal gene transfer among microorganisms in food: current knowledge and future perspectives
-
Rossi F, Rizzotti L, Felis GE, Torriani S (2014) Horizontal gene transfer among microorganisms in food: current knowledge and future perspectives. Food Microbiol 42:232–243
-
(2014)
Food Microbiol
, vol.42
, pp. 232-243
-
-
Rossi, F.1
Rizzotti, L.2
Felis, G.E.3
Torriani, S.4
-
57
-
-
67650909302
-
Mechanisms of hop inhibition: hop ionophores
-
Behr J, Vogel RF (2009) Mechanisms of hop inhibition: hop ionophores. J Agric Food Chem 57(14):6074–6081
-
(2009)
J Agric Food Chem
, vol.57
, Issue.14
, pp. 6074-6081
-
-
Behr, J.1
Vogel, R.F.2
-
58
-
-
0034870399
-
Hop resistance in the beer spoilage bacterium Lactobacillus brevis is mediated by the ATP-binding cassette multidrug transporter HorA
-
Sakamoto K, Margolles A, van Veen HW, Konings WN (2001) Hop resistance in the beer spoilage bacterium Lactobacillus brevis is mediated by the ATP-binding cassette multidrug transporter HorA. J Bacteriol 183(18):5371–5375
-
(2001)
J Bacteriol
, vol.183
, Issue.18
, pp. 5371-5375
-
-
Sakamoto, K.1
Margolles, A.2
van Veen, H.W.3
Konings, W.N.4
-
59
-
-
0242659822
-
Beer spoilage bacteria and hop resistance
-
Sakamoto K, Konings WN (2003) Beer spoilage bacteria and hop resistance. Int J Food Microbiol 89(2–3):105–124
-
(2003)
Int J Food Microbiol
, vol.89
, Issue.2-3
, pp. 105-124
-
-
Sakamoto, K.1
Konings, W.N.2
-
60
-
-
33750052293
-
Characterization of a highly hop-resistant Lactobacillus brevis strain lacking hop transport
-
Behr J, Gänzle MG, Vogel RF (2006) Characterization of a highly hop-resistant Lactobacillus brevis strain lacking hop transport. Appl Environ Microbiol 72(10):6483–6492
-
(2006)
Appl Environ Microbiol
, vol.72
, Issue.10
, pp. 6483-6492
-
-
Behr, J.1
Gänzle, M.G.2
Vogel, R.F.3
-
61
-
-
0030786391
-
Purification and partial characterization of an antigen specific to Lactobacillus brevis with beer spoilage activity
-
Yasui T, Yoda K (1997) Purification and partial characterization of an antigen specific to Lactobacillus brevis with beer spoilage activity. FEMS Microbiol Lett 151(2):8
-
(1997)
FEMS Microbiol Lett
, vol.151
, Issue.2
, pp. 8
-
-
Yasui, T.1
Yoda, K.2
-
62
-
-
85030180313
-
Characterization of β-glucan formation by Lactobacillus brevis TMW 1.2112 isolated from slimy spoiled beer
-
Fraunhofer ME, Geissler AJ, Wefers D, Bunzel M, Jakob F, Vogel RF (2017) Characterization of β-glucan formation by Lactobacillus brevis TMW 1.2112 isolated from slimy spoiled beer. Int J Biol Macromol. 10.1016/j.ijbiomac.2017.09.063
-
(2017)
Int J Biol Macromol
-
-
Fraunhofer, M.E.1
Geissler, A.J.2
Wefers, D.3
Bunzel, M.4
Jakob, F.5
Vogel, R.F.6
-
63
-
-
31544445441
-
horC confers beer-spoilage ability on hop-sensitive Lactobacillus brevis ABBC45cc
-
Iijima K, Suzuki K, Ozaki K, Yamashita H (2006) horC confers beer-spoilage ability on hop-sensitive Lactobacillus brevis ABBC45cc. J Appl Microbiol 100(6):1282–1288. 10.1111/j.1365-2672.2006.02869.x
-
(2006)
J Appl Microbiol
, vol.100
, Issue.6
, pp. 1282-1288
-
-
Iijima, K.1
Suzuki, K.2
Ozaki, K.3
Yamashita, H.4
-
64
-
-
84908388643
-
Molecular mechanisms behind the antimicrobial activity of hop iso-alpha-acids in Lactobacillus brevis
-
Schurr BC, Hahne H, Kuster B, Behr J, Vogel RF (2015) Molecular mechanisms behind the antimicrobial activity of hop iso-alpha-acids in Lactobacillus brevis. Food Microbiol 46:553–563
-
(2015)
Food Microbiol
, vol.46
, pp. 553-563
-
-
Schurr, B.C.1
Hahne, H.2
Kuster, B.3
Behr, J.4
Vogel, R.F.5
-
65
-
-
85025654783
-
Beer spoilage ability of lactic acid bacteria is a plasmid-encoded trait
-
Geissler AJ, Behr J, Schmid J, Zehe A, Vogel RF (2017) Beer spoilage ability of lactic acid bacteria is a plasmid-encoded trait. Brew Sci 70:57–73
-
(2017)
Brew Sci
, vol.70
, pp. 57-73
-
-
Geissler, A.J.1
Behr, J.2
Schmid, J.3
Zehe, A.4
Vogel, R.F.5
-
66
-
-
76149103563
-
Mechanisms of hop inhibition include the transmembrane redox reaction
-
Behr J, Vogel RF (2010) Mechanisms of hop inhibition include the transmembrane redox reaction. Appl Environ Microbiol 76(1):142–149
-
(2010)
Appl Environ Microbiol
, vol.76
, Issue.1
, pp. 142-149
-
-
Behr, J.1
Vogel, R.F.2
-
67
-
-
84919869667
-
The fungal aroma gene ATF1 promotes dispersal of yeast cells through insect vectors
-
Christiaens JF, Franco LM, Cools TL, De Meester L, Michiels J, Wenseleers T, Hassan BA, Yaksi E, Verstrepen KJ (2014) The fungal aroma gene ATF1 promotes dispersal of yeast cells through insect vectors. Cell Rep 9(2):425–432
-
(2014)
Cell Rep
, vol.9
, Issue.2
, pp. 425-432
-
-
Christiaens, J.F.1
Franco, L.M.2
Cools, T.L.3
De Meester, L.4
Michiels, J.5
Wenseleers, T.6
Hassan, B.A.7
Yaksi, E.8
Verstrepen, K.J.9
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