CDD: A Conserved Domain Database for protein classification

Nucleic Acids Research

Volumn 33, Issue DATABASE ISS., 2005, Pages

  Marchler Bauer, Aron ^a   Anderson, John B ^a   Cherukuri, Praveen F ^a   DeWeese Scott, Carol ^a   Geer, Lewis Y ^a   Gwadz, Marc ^a   He, Siqian ^a   Hurwitz, David I ^a   Jackson, John D ^a   Ke, Zhaoxi ^a   Lanczycki, Christopher J ^a   Liebert, Cynthia A ^a   Liu, Chunlei ^a   Lu, Fu ^a   Marchler, Gabriele H ^a   Mullokandov, Mikhail ^a   Shoemaker, Benjamin A ^a   Simonyan, Vahan ^a   Song, James S ^a   Thiessen, Paul A ^a   Yamashita, Roxanne A ^a   Yin, Jodie J ^a   Zhang, Dachuan ^a   Bryant, Stephen H ^a   more..

^a NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; AMINO ACID SEQUENCE; ARTICLE; COMPUTER ANALYSIS; CONSERVED DOMAIN DATABASE; GENETIC CONSERVATION; INFORMATION PROCESSING; INTERNET; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEIN DOMAIN; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; TAXONOMY; CLASSIFICATION; COG DATABASE; COMPUTER PROGRAM; HUMAN COMPUTER INTERACTION; INFORMATION RETRIEVAL; MATHEMATICAL COMPUTING; MEDLINE; NCBI TAXONOMY DATABASE; NONHUMAN; PFAM DATABASE; PROTEIN PROTEIN INTERACTION; SEQUENCE ALIGNMENT; SEQUENCE DATABASE; SMART DATABASE;

AMINO ACID SEQUENCE; CONSERVED SEQUENCE; DATABASES, PROTEIN; PHYLOGENY; PROTEIN STRUCTURE, TERTIARY; PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN; USER-COMPUTER INTERFACE;

KINESIN;

EID: 13444262384     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gki069     Document Type: Article

References (9)

1. Bateman,A., Coin,L., Durbin,R., Finn,R.D., Hollich,V., Griffiths-Jones,S., Khanna,A., Marshall,M., Moxon,S., Sonnhammer,E.L., Studholme,D.J., Yeats,C. and Eddy,S.R. (2004) The Pfam protein families database. Nucleic Acids Res., 32, 138-141.
2. Letunic,I., Copley,R.R., Schmidt,S., Ciccarelli,F.D., Doerks,T., Schultz,J., Ponting,C.P. and Bork,P. (2004) SMART 4.0: towards genomic data integration. Nucleic Acids Res., 32, 142-144.
3. Tatusov,R.L., Fedorova,N.D., Jackson,J.D., Jacobs,A.R., Kiryutin,B., Koonin,E.V., Krylov,D.M., Mazumder,R., Mekhedov,S.L., Nikolskaya,A.N., Rao,B.S., Smirnov,S., Sverdlov,A.V., Vasudevan,S., Wolf,Y.I., Yin,J.J. and Natale,D.A. (2003) The COG database: and updated version includes eukaryotes. BMC Bioinformatics, 4, 41.
4. Marchler-Bauer,A. and Bryant,S.H. (2004) CD-Search: protein domain annotations on the fly. Nucleic Acids Res., 32, W327-W331.
5. Marchler-Bauer,A., Panchenko,A.R., Ariel,N. and Bryant,S.H. (2002) Comparison of sequence and structure alignments for protein domains. Proteins, 48, 439-446.
6. Marchler-Bauer,A., Panchenko,A.R., Shoemaker,B.A., Thiessen,P.A., Geer,L.Y. and Bryant,S.H. (2002) CDD: a database of conserved domain alignments with links to domain three-dimensional structure. Nucleic Acids Res., 30, 281-283.
7. Wheeler,D.L., Church,D.M., Edgar,R., Federhen,S., Helmberg,W., Madden,T.L., Pontius,J.U., Schuler,G.D., Schriml,L.M., Sequeira,E., Suzek,T.O., Tatusova,T.A. and Wagner,L. (2004) Database resources of the National Center for Biotechnology Information: update. Nucleic Acids Res., 32, 35-40.
8. Geer,L.Y., Domrachev,M., Lipman,D.J. and Bryant,S.H. (2002) CDART: protein homology by domain architecture. Genome Res., 12 1619-1623.
9. Wang,Y., Geer,L.Y., Chappey,C., Kans,J.A. and Bryant,S.H. (2000) Cn3D: sequence and structure views for Entrez. Trends Biochem. Sci., 25, 300-302.