-
1
-
-
78650647970
-
Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli
-
Atsumi, S., Wu, T.-Y., Machado, I.M.P., Huang, W.-C., Chen, P.-Y., Pellegrini, M., Liao, J.C., Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli. Mol. Syst. Biol., 6, 2010, 449, 10.1038/msb.2010.98.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 449
-
-
Atsumi, S.1
Wu, T.-Y.2
Machado, I.M.P.3
Huang, W.-C.4
Chen, P.-Y.5
Pellegrini, M.6
Liao, J.C.7
-
2
-
-
85028920369
-
Improvement of d-Lactic acid production in Saccharomyces cerevisiae under acidic conditions by evolutionary and rational metabolic engineering
-
Baek, S.-H., Kwon, E.Y., Bae, S.-J., Cho, B.-R., Kim, S.-Y., Hahn, J.-S., Improvement of d-Lactic acid production in Saccharomyces cerevisiae under acidic conditions by evolutionary and rational metabolic engineering. Biotechnol. J., 12, 2017, 1700015, 10.1002/biot.201700015.
-
(2017)
Biotechnol. J.
, vol.12
, pp. 1700015
-
-
Baek, S.-H.1
Kwon, E.Y.2
Bae, S.-J.3
Cho, B.-R.4
Kim, S.-Y.5
Hahn, J.-S.6
-
3
-
-
79958097953
-
The moderately efficient enzyme: evolutionary and physicochemical
-
Bar-even, A., Noor, E., Savir, Y., Liebermeister, W., Davidi, D., Tawfik, D.S., Milo, R., Taw, D.S., Milo, R., The moderately efficient enzyme: evolutionary and physicochemical. Biochemistry 50 (2011), 4402–4410, 10.1021/bi2002289.
-
(2011)
Biochemistry
, vol.50
, pp. 4402-4410
-
-
Bar-even, A.1
Noor, E.2
Savir, Y.3
Liebermeister, W.4
Davidi, D.5
Tawfik, D.S.6
Milo, R.7
Taw, D.S.8
Milo, R.9
-
4
-
-
84866487453
-
Integration of expression data in genome-scale metabolic network reconstructions
-
Blazier, A.S., Papin, J.A., Integration of expression data in genome-scale metabolic network reconstructions. Front. Physiol., 3, 2012, 299, 10.3389/fphys.2012.00299.
-
(2012)
Front. Physiol.
, vol.3
, pp. 299
-
-
Blazier, A.S.1
Papin, J.A.2
-
5
-
-
0242487787
-
OptKnock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization
-
Burgard, A., Pharkya, P., Maranas, C., OptKnock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization. Biotechnol. Bioeng. 84 (2003), 647–657, 10.1002/bit.10803.
-
(2003)
Biotechnol. Bioeng.
, vol.84
, pp. 647-657
-
-
Burgard, A.1
Pharkya, P.2
Maranas, C.3
-
6
-
-
84907350970
-
Generation of an atlas for commodity chemical production in Escherichia coli and a novel pathway prediction algorithm, GEM-Path
-
Campodonico, M.A., Andrews, B.A., Asenjo, J.A., Palsson, B.O., Feist, A.M., Generation of an atlas for commodity chemical production in Escherichia coli and a novel pathway prediction algorithm, GEM-Path. Metab. Eng. 25 (2014), 140–158, 10.1016/j.ymben.2014.07.009.
-
(2014)
Metab. Eng.
, vol.25
, pp. 140-158
-
-
Campodonico, M.A.1
Andrews, B.A.2
Asenjo, J.A.3
Palsson, B.O.4
Feist, A.M.5
-
7
-
-
78649694766
-
Genetic basis of growth adaptation of Escherichia coli after deletion of pgi, a major metabolic gene
-
Charusanti, P., Conrad, T.M., Knight, E.M., Venkataraman, K., Fong, N.L., Xie, B., Gao, Y., Palsson, B.Ø., Genetic basis of growth adaptation of Escherichia coli after deletion of pgi, a major metabolic gene. PLoS Genet., 6, 2010, e1001186, 10.1371/journal.pgen.1001186.
-
(2010)
PLoS Genet.
, vol.6
, pp. e1001186
-
-
Charusanti, P.1
Conrad, T.M.2
Knight, E.M.3
Venkataraman, K.4
Fong, N.L.5
Xie, B.6
Gao, Y.7
Palsson, B.Ø.8
-
8
-
-
85028550972
-
Synthetic and systems biology for microbial production of commodity chemicals
-
Chubukov, V., Mukhopadhyay, A., Petzold, C.J., Keasling, J.D., Martín, H.G., Synthetic and systems biology for microbial production of commodity chemicals. npj Syst. Biol. Appl., 2, 2016, 16009, 10.1038/npjsba.2016.9.
-
(2016)
npj Syst. Biol. Appl.
, vol.2
, pp. 16009
-
-
Chubukov, V.1
Mukhopadhyay, A.2
Petzold, C.J.3
Keasling, J.D.4
Martín, H.G.5
-
9
-
-
0024723183
-
The fermentation pathways of Escherichia coli
-
Clark, D.P., The fermentation pathways of Escherichia coli. FEMS Microbiol. Lett. 63 (1989), 223–234, 10.1111/j.1574-6968.1989.tb03398.x.
-
(1989)
FEMS Microbiol. Lett.
, vol.63
, pp. 223-234
-
-
Clark, D.P.1
-
10
-
-
84962212496
-
cat measurements
-
cat measurements. Proc. Natl. Acad. Sci. 113 (2016), 3401–3406, 10.1073/pnas.1514240113.
-
(2016)
Proc. Natl. Acad. Sci.
, vol.113
, pp. 3401-3406
-
-
Davidi, D.1
Noor, E.2
Liebermeister, W.3
Bar-Even, A.4
Flamholz, A.5
Tummler, K.6
Barenholz, U.7
Goldenfeld, M.8
Shlomi, T.9
Milo, R.10
-
11
-
-
85016050928
-
Cell factory engineering
-
Davy, A.M., Kildegaard, H.F., Andersen, M.R., Cell factory engineering. Cell Syst. 4 (2017), 262–275, 10.1016/j.cels.2017.02.010.
-
(2017)
Cell Syst.
, vol.4
, pp. 262-275
-
-
Davy, A.M.1
Kildegaard, H.F.2
Andersen, M.R.3
-
12
-
-
79955806186
-
Engineering microbial biofuel tolerance and export using efflux pumps
-
Dunlop, M.J., Dossani, Z.Y., Szmidt, H.L., Chu, H.C., Lee, T.S., Keasling, J.D., Hadi, M.Z., Mukhopadhyay, A., Engineering microbial biofuel tolerance and export using efflux pumps. Mol. Syst. Biol., 7, 2011, 487, 10.1038/msb.2011.21.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 487
-
-
Dunlop, M.J.1
Dossani, Z.Y.2
Szmidt, H.L.3
Chu, H.C.4
Lee, T.S.5
Keasling, J.D.6
Hadi, M.Z.7
Mukhopadhyay, A.8
-
13
-
-
84992648219
-
Multi-omic data integration enables discovery of hidden biological regularities
-
Ebrahim, A., Brunk, E., Tan, J., O'Brien, E.J., Kim, D., Szubin, R., Lerman, J.A., Lechner, A., Sastry, A., Bordbar, A., Feist, A.M., Palsson, B.O., Multi-omic data integration enables discovery of hidden biological regularities. Nat. Commun., 7, 2016, 13091, 10.1038/ncomms13091.
-
(2016)
Nat. Commun.
, vol.7
, pp. 13091
-
-
Ebrahim, A.1
Brunk, E.2
Tan, J.3
O'Brien, E.J.4
Kim, D.5
Szubin, R.6
Lerman, J.A.7
Lechner, A.8
Sastry, A.9
Bordbar, A.10
Feist, A.M.11
Palsson, B.O.12
-
14
-
-
84881152495
-
COBRApy: constraints-based reconstruction and analysis for python
-
Ebrahim, A., Lerman, J.A., Palsson, B.O., Hyduke, D.R., COBRApy: constraints-based reconstruction and analysis for python. BMC Syst. Biol., 7, 2013, 74, 10.1186/1752-0509-7-74.
-
(2013)
BMC Syst. Biol.
, vol.7
, pp. 74
-
-
Ebrahim, A.1
Lerman, J.A.2
Palsson, B.O.3
Hyduke, D.R.4
-
15
-
-
34347332311
-
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
-
Feist, A.M., Henry, C.S., Reed, J.L., Krummenacker, M., Joyce, A.R., Karp, P.D., Broadbelt, L.J., Hatzimanikatis, V., Palsson, B.Ø., A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Mol. Syst. Biol., 3, 2007, 121, 10.1038/msb4100155.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 121
-
-
Feist, A.M.1
Henry, C.S.2
Reed, J.L.3
Krummenacker, M.4
Joyce, A.R.5
Karp, P.D.6
Broadbelt, L.J.7
Hatzimanikatis, V.8
Palsson, B.Ø.9
-
16
-
-
77950863401
-
Model-driven evalution of the production potential for growth coupled products of Escherichia coli
-
Feist, A.M., Zielinski, D.C., Orth, J.D., Schellenberger, J., Markus, J., Palsson, B.Ø., Model-driven evalution of the production potential for growth coupled products of Escherichia coli. Metab. Eng. 12 (2010), 173–186, 10.1016/j.ymben.2009.10.003.Model-driven.
-
(2010)
Metab. Eng.
, vol.12
, pp. 173-186
-
-
Feist, A.M.1
Zielinski, D.C.2
Orth, J.D.3
Schellenberger, J.4
Markus, J.5
Palsson, B.Ø.6
-
17
-
-
25144505718
-
In silico design and adaptive evolution of Escherichia coli for production of lactic acid
-
Fong, S.S., Burgard, A.P., Herring, C.D., Knight, E.M., Blattner, F.R., Maranas, C.M., Palsson, B.O., In silico design and adaptive evolution of Escherichia coli for production of lactic acid. Biotechnol. Bioeng. 91 (2005), 643–648.
-
(2005)
Biotechnol. Bioeng.
, vol.91
, pp. 643-648
-
-
Fong, S.S.1
Burgard, A.P.2
Herring, C.D.3
Knight, E.M.4
Blattner, F.R.5
Maranas, C.M.6
Palsson, B.O.7
-
18
-
-
84864186953
-
Metabolic engineering of Saccharomyces cerevisiae: a key cell factory platform for future biorefineries
-
Hong, K.K., Nielsen, J., Metabolic engineering of Saccharomyces cerevisiae: a key cell factory platform for future biorefineries. Cell. Mol. Life Sci. 69 (2012), 2671–2690, 10.1007/s00018-012-0945-1.
-
(2012)
Cell. Mol. Life Sci.
, vol.69
, pp. 2671-2690
-
-
Hong, K.K.1
Nielsen, J.2
-
19
-
-
85055149735
-
-
Industrial biotechnology and biomass utilisation. Futur. Prospect. Ind. Biotechnol.
-
Johnson, F.X., 2008. Industrial biotechnology and biomass utilisation. Futur. Prospect. Ind. Biotechnol.
-
(2008)
-
-
Johnson, F.X.1
-
20
-
-
84976877544
-
BiGG Models: a platform for integrating, standardizing and sharing genome-scale models
-
King, Z.A., Lu, J., Ager, A.D., Miller, P., Federowicz, S., Lerman, J.A., Ebrahim, A., Palsson, B.O., Lewis, N.E., BiGG Models: a platform for integrating, standardizing and sharing genome-scale models. Nucleic Acids Res., 44, 2016, 10.1093/nar/gkv1049.
-
(2016)
Nucleic Acids Res.
, vol.44
-
-
King, Z.A.1
Lu, J.2
Ager, A.D.3
Miller, P.4
Federowicz, S.5
Lerman, J.A.6
Ebrahim, A.7
Palsson, B.O.8
Lewis, N.E.9
-
21
-
-
85007574032
-
Literature mining supports a next-generation modeling approach to predict cellular byproduct secretion
-
King, Z.A., O'Brien, E.J., Feist, A.M., Palsson, B.O., Literature mining supports a next-generation modeling approach to predict cellular byproduct secretion. Metab. Eng. 39 (2017), 220–227, 10.1016/j.ymben.2016.12.004.
-
(2017)
Metab. Eng.
, vol.39
, pp. 220-227
-
-
King, Z.A.1
O'Brien, E.J.2
Feist, A.M.3
Palsson, B.O.4
-
22
-
-
84943604629
-
Systems strategies for developing industrial microbial strains
-
Lee, S.Y., Kim, H.U., Systems strategies for developing industrial microbial strains. Nat. Biotechnol. 33 (2015), 1061–1072, 10.1038/nbt.3365.
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 1061-1072
-
-
Lee, S.Y.1
Kim, H.U.2
-
23
-
-
84858439602
-
Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods
-
Lewis, N.E., Nagarajan, H., Palsson, B.O., Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods. Nat. Rev. Microbiol. 10 (2012), 291–305, 10.1038/nrmicro2737.
-
(2012)
Nat. Rev. Microbiol.
, vol.10
, pp. 291-305
-
-
Lewis, N.E.1
Nagarajan, H.2
Palsson, B.O.3
-
24
-
-
84894054579
-
Advancing metabolic models with kinetic information
-
Link, H., Christodoulou, D., Sauer, U., Advancing metabolic models with kinetic information. Curr. Opin. Biotechnol. 29 (2014), 8–14, 10.1016/j.copbio.2014.01.015.
-
(2014)
Curr. Opin. Biotechnol.
, vol.29
, pp. 8-14
-
-
Link, H.1
Christodoulou, D.2
Sauer, U.3
-
25
-
-
84907272917
-
Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale
-
Liu, J.K., O'Brien, E.J., Lerman, J.A., Zengler, K., Palsson, B.O., Feist, A.M., Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale. BMC Syst. Biol., 8, 2014, 110, 10.1186/s12918-014-0110-6.
-
(2014)
BMC Syst. Biol.
, vol.8
, pp. 110
-
-
Liu, J.K.1
O'Brien, E.J.2
Lerman, J.A.3
Zengler, K.4
Palsson, B.O.5
Feist, A.M.6
-
26
-
-
85050988747
-
COBRAme: a computational framework for genome-scale models of metabolism and gene expression
-
Lloyd, C.J., Ebrahim, A., Yang, L., King, Z.A., Catoiu, E., O'Brien, E.J., Liu, J.K., Palsson, B.O., COBRAme: a computational framework for genome-scale models of metabolism and gene expression. PLOS Comput. Biol., 14, 2018, e1006302, 10.1371/journal.pcbi.1006302.
-
(2018)
PLOS Comput. Biol.
, vol.14
, pp. e1006302
-
-
Lloyd, C.J.1
Ebrahim, A.2
Yang, L.3
King, Z.A.4
Catoiu, E.5
O'Brien, E.J.6
Liu, J.K.7
Palsson, B.O.8
-
27
-
-
85040197882
-
Dissecting the genetic and metabolic mechanisms of adaptation to the knockout of a major metabolic enzyme in Escherichia coli
-
Long, C.P., Gonzalez, J.E., Feist, A.M., Palsson, B.O., Antoniewicz, M.R., Dissecting the genetic and metabolic mechanisms of adaptation to the knockout of a major metabolic enzyme in Escherichia coli. Proc. Natl. Acad. Sci. 115 (2018), 222–227, 10.1073/pnas.1716056115.
-
(2018)
Proc. Natl. Acad. Sci.
, vol.115
, pp. 222-227
-
-
Long, C.P.1
Gonzalez, J.E.2
Feist, A.M.3
Palsson, B.O.4
Antoniewicz, M.R.5
-
28
-
-
69249146187
-
Large-scale identification of genetic design strategies using local search
-
Lun, D.S., Rockwell, G., Guido, N.J., Baym, M., Kelner, J.A., Berger, B., Galagan, J.E., Church, G.M., Large-scale identification of genetic design strategies using local search. Mol. Syst. Biol., 5, 2009, 296, 10.1038/msb.2009.57.
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 296
-
-
Lun, D.S.1
Rockwell, G.2
Guido, N.J.3
Baym, M.4
Kelner, J.A.5
Berger, B.6
Galagan, J.E.7
Church, G.M.8
-
29
-
-
84947073615
-
-
Solving multiscale linear programs using the simplex method in quadruple precision, In: Numerical Analysis and Optimization III, Springer Proceedings in Mathematics&Statistics. Springer, Cham
-
Ma, D., Saunders, M.A., 2014. Solving multiscale linear programs using the simplex method in quadruple precision, In: Numerical Analysis and Optimization III, Springer Proceedings in Mathematics&Statistics. Springer, Cham, pp. 223–235.
-
(2014)
, pp. 223-235
-
-
Ma, D.1
Saunders, M.A.2
-
30
-
-
84938074954
-
Co-evolution of strain design methods based on flux balance and elementary mode analysis
-
Machado, D., Herrgård, M.J., Co-evolution of strain design methods based on flux balance and elementary mode analysis. Metab. Eng. Commun. 2 (2015), 85–92, 10.1016/j.meteno.2015.04.001.
-
(2015)
Metab. Eng. Commun.
, vol.2
, pp. 85-92
-
-
Machado, D.1
Herrgård, M.J.2
-
31
-
-
84964043843
-
In silico constraint-based strain optimization methods: the quest for optimal cell factories
-
Maia, P., Rocha, M., Rocha, I., In silico constraint-based strain optimization methods: the quest for optimal cell factories. Microbiol. Mol. Biol. Rev. 80 (2016), 45–67, 10.1128/MMBR.00014-15.
-
(2016)
Microbiol. Mol. Biol. Rev.
, vol.80
, pp. 45-67
-
-
Maia, P.1
Rocha, M.2
Rocha, I.3
-
32
-
-
85047937970
-
Adaptation to the coupling of glycolysis to toxic methylglyoxal production in tpiA deletion strains of Escherichia coli requires synchronized and counterintuitive genetic changes
-
McCloskey, D., Xu, S., Sandberg, T.E., Brunk, E., Hefner, Y., Szubin, R., Feist, A.M., Palsson, B.O., Adaptation to the coupling of glycolysis to toxic methylglyoxal production in tpiA deletion strains of Escherichia coli requires synchronized and counterintuitive genetic changes. Metab. Eng. 48 (2018), 82–93, 10.1016/j.ymben.2018.05.012.
-
(2018)
Metab. Eng.
, vol.48
, pp. 82-93
-
-
McCloskey, D.1
Xu, S.2
Sandberg, T.E.3
Brunk, E.4
Hefner, Y.5
Szubin, R.6
Feist, A.M.7
Palsson, B.O.8
-
33
-
-
85034224340
-
Generation of a platform strain for ionic liquid tolerance using adaptive laboratory evolution
-
Mohamed, E.T., Wang, S., Lennen, R.M., Herrgård, M.J., Simmons, B.A., Singer, S.W., Feist, A.M., Generation of a platform strain for ionic liquid tolerance using adaptive laboratory evolution. Microb. Cell Fact., 16, 2017, 204, 10.1186/s12934-017-0819-1.
-
(2017)
Microb. Cell Fact.
, vol.16
, pp. 204
-
-
Mohamed, E.T.1
Wang, S.2
Lennen, R.M.3
Herrgård, M.J.4
Simmons, B.A.5
Singer, S.W.6
Feist, A.M.7
-
34
-
-
85008192136
-
Increased production of L-serine in Escherichia coli through Adaptive Laboratory Evolution
-
Mundhada, H., Seoane, J.M., Schneider, K., Koza, A., Christensen, H.B., Klein, T., Phaneuf, P.V., Herrgard, M., Feist, A.M., Nielsen, A.T., Increased production of L-serine in Escherichia coli through Adaptive Laboratory Evolution. Metab. Eng. 39 (2017), 141–150, 10.1016/j.ymben.2016.11.008.
-
(2017)
Metab. Eng.
, vol.39
, pp. 141-150
-
-
Mundhada, H.1
Seoane, J.M.2
Schneider, K.3
Koza, A.4
Christensen, H.B.5
Klein, T.6
Phaneuf, P.V.7
Herrgard, M.8
Feist, A.M.9
Nielsen, A.T.10
-
35
-
-
84885367114
-
Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction
-
O'Brien, E.J., Lerman, J.A., Chang, R.L., Hyduke, D.R., Palsson, B., Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction. Mol. Syst. Biol., 9, 2013, 693, 10.1038/msb.2013.52.
-
(2013)
Mol. Syst. Biol.
, vol.9
, pp. 693
-
-
O'Brien, E.J.1
Lerman, J.A.2
Chang, R.L.3
Hyduke, D.R.4
Palsson, B.5
-
36
-
-
80054069179
-
A comprehensive genome-scale reconstruction of Escherichia coli metabolism-2011
-
Orth, J.D., Conrad, T.M., Na, J., Lerman, J.A., Nam, H., Feist, A.M., Palsson, B., A comprehensive genome-scale reconstruction of Escherichia coli metabolism-2011. Mol. Syst. Biol., 7, 2011, 535, 10.1038/msb.2011.65.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 535
-
-
Orth, J.D.1
Conrad, T.M.2
Na, J.3
Lerman, J.A.4
Nam, H.5
Feist, A.M.6
Palsson, B.7
-
37
-
-
53049087092
-
Towards systems metabolic engineering of microorganisms for amino acid production
-
Park, J.H., Lee, S.Y., Towards systems metabolic engineering of microorganisms for amino acid production. Curr. Opin. Biotechnol. 19 (2008), 454–460, 10.1016/j.copbio.2008.08.007.
-
(2008)
Curr. Opin. Biotechnol.
, vol.19
, pp. 454-460
-
-
Park, J.H.1
Lee, S.Y.2
-
38
-
-
30044437327
-
Evolutionary programming as a platform for in silico metabolic engineering
-
Patil, K.R., Rocha, I., Forster, J., Nielsen, J., Evolutionary programming as a platform for in silico metabolic engineering. BMC Bioinforma., 6, 2005, 308, 10.1186/1471-2105-6-308.
-
(2005)
BMC Bioinforma.
, vol.6
, pp. 308
-
-
Patil, K.R.1
Rocha, I.2
Forster, J.3
Nielsen, J.4
-
39
-
-
57449102586
-
Aerobic fermentation of D-glucose by an evolved cytochrome oxidase-deficient Escherichia coli strain
-
Portnoy, V.A., Herrgård, M.J., Palsson, B.Ø., Aerobic fermentation of D-glucose by an evolved cytochrome oxidase-deficient Escherichia coli strain. Appl. Environ. Microbiol. 74 (2008), 7561–7569, 10.1128/AEM.00880-08.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 7561-7569
-
-
Portnoy, V.A.1
Herrgård, M.J.2
Palsson, B.Ø.3
-
40
-
-
85055168012
-
-
Raw materials for chemicals from petroleum, In: Literature Resources, Advances in Chemistry. American Chemical Society
-
Sittig, M., Weil, B.H., 1954. Raw materials for chemicals from petroleum, In: Literature Resources, Advances in Chemistry. American Chemical Society, pp. 36–327. 〈 http://dx.doi.org/10.1021/ba-1954-0010.ch036〉.
-
(1954)
, pp. 36-327
-
-
Sittig, M.1
Weil, B.H.2
-
41
-
-
77949495880
-
Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways
-
Tepper, N., Shlomi, T., Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways. Bioinformatics 26 (2009), 536–543, 10.1093/bioinformatics/btp704.
-
(2009)
Bioinformatics
, vol.26
, pp. 536-543
-
-
Tepper, N.1
Shlomi, T.2
-
42
-
-
75149129569
-
A protocol for generating a high quality genome-scale metabolic reconstruction
-
Thiele, I., Palsson, B., A protocol for generating a high quality genome-scale metabolic reconstruction. Nat. Protoc. 5 (2010), 93–121.
-
(2010)
Nat. Protoc.
, vol.5
, pp. 93-121
-
-
Thiele, I.1
Palsson, B.2
-
43
-
-
84995608089
-
solveME: fast and reliable solution of nonlinear ME models
-
Yang, L., Ma, D., Ebrahim, A., Lloyd, C.J., Saunders, M.A., Palsson, B.O., solveME: fast and reliable solution of nonlinear ME models. BMC Bioinform. 17 (2016), 1–9, 10.1186/s12859-016-1240-1.
-
(2016)
BMC Bioinform.
, vol.17
, pp. 1-9
-
-
Yang, L.1
Ma, D.2
Ebrahim, A.3
Lloyd, C.J.4
Saunders, M.A.5
Palsson, B.O.6
-
44
-
-
79959374585
-
Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol
-
Yim, H., Haselbeck, R., Niu, W., Pujol-Baxley, C., Burgard, A., Boldt, J., Khandurina, J., Trawick, J.D., Osterhout, R.E., Stephen, R., Estadilla, J., Teisan, S., Schreyer, H.B., Andrae, S., Yang, T.H., Lee, S.Y., Burk, M.J., Van Dien, S., Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol. Nat. Chem. Biol. 7 (2011), 445–452, 10.1038/nchembio.580.
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 445-452
-
-
Yim, H.1
Haselbeck, R.2
Niu, W.3
Pujol-Baxley, C.4
Burgard, A.5
Boldt, J.6
Khandurina, J.7
Trawick, J.D.8
Osterhout, R.E.9
Stephen, R.10
Estadilla, J.11
Teisan, S.12
Schreyer, H.B.13
Andrae, S.14
Yang, T.H.15
Lee, S.Y.16
Burk, M.J.17
Van Dien, S.18
-
45
-
-
35649021818
-
Production of L-alanine by metabolically engineered Escherichia coli
-
Zhang, X., Jantama, K., Moore, J.C., Shanmugam, K.T., Ingram, L.O., Production of L-alanine by metabolically engineered Escherichia coli. Appl. Microbiol. Biotechnol. 77 (2007), 355–366, 10.1007/s00253-007-1170-y.
-
(2007)
Appl. Microbiol. Biotechnol.
, vol.77
, pp. 355-366
-
-
Zhang, X.1
Jantama, K.2
Moore, J.C.3
Shanmugam, K.T.4
Ingram, L.O.5
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