-
1
-
-
0035543093
-
The depth of chemical time and the power of enzymes as catalysts
-
Wolfenden R, Snider MJ (2001) The depth of chemical time and the power of enzymes as catalysts. Acc Chem Res 34(12):938-945.
-
(2001)
Acc Chem Res
, vol.34
, Issue.12
, pp. 938-945
-
-
Wolfenden, R.1
Snider, M.J.2
-
3
-
-
2942627409
-
Applications of metabolic modelling to plant metabolism
-
Poolman MG, Assmus HE, Fell DA (2004) Applications of metabolic modelling to plant metabolism. J Exp Bot 55(400):1177-1186.
-
(2004)
J Exp Bot
, vol.55
, Issue.400
, pp. 1177-1186
-
-
Poolman, M.G.1
Assmus, H.E.2
Fell, D.A.3
-
4
-
-
84931273722
-
Data-driven integration of genome-scale regulatory and metabolic network models
-
Imam S, Schäuble S, Brooks AN, Baliga NS, Price ND (2015) Data-driven integration of genome-scale regulatory and metabolic network models. Front Microbiol 6:409.
-
(2015)
Front Microbiol
, vol.6
, pp. 409
-
-
Imam, S.1
Schäuble, S.2
Brooks, A.N.3
Baliga, N.S.4
Price, N.D.5
-
5
-
-
84866539049
-
RELATCH: Relative optimality in metabolic networks explains robust metabolic and regulatory responses to perturbations
-
Kim J, Reed JL (2012) RELATCH: Relative optimality in metabolic networks explains robust metabolic and regulatory responses to perturbations. Genome Biol 13(9):R78.
-
(2012)
Genome Biol
, vol.13
, Issue.9
, pp. R78
-
-
Kim, J.1
Reed, J.L.2
-
6
-
-
84945587006
-
Quantitative prediction of genome-wide resource allocation in bacteria
-
Goelzer A, et al. (2015) Quantitative prediction of genome-wide resource allocation in bacteria. Metab Eng 32:232-243.
-
(2015)
Metab Eng
, vol.32
, pp. 232-243
-
-
Goelzer, A.1
-
8
-
-
84882748254
-
Heterogeneity in protein expression induces metabolic variability in a modeled Escherichia coli population
-
Labhsetwar P, Cole JA, Roberts E, Price ND, Luthey-Schulten ZA (2013) Heterogeneity in protein expression induces metabolic variability in a modeled Escherichia coli population. Proc Natl Acad Sci USA 110(34):14006-14011.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.34
, pp. 14006-14011
-
-
Labhsetwar, P.1
Cole, J.A.2
Roberts, E.3
Price, N.D.4
Luthey-Schulten, Z.A.5
-
9
-
-
84864258618
-
A whole-cell computational model predicts phenotype from genotype
-
Karr JR, et al. (2012) A whole-cell computational model predicts phenotype from genotype. Cell 150(2):389-401.
-
(2012)
Cell
, vol.150
, Issue.2
, pp. 389-401
-
-
Karr, J.R.1
-
10
-
-
75149190447
-
Measuring enzyme activities under standardized in vivo-like conditions for systems biology
-
van Eunen K, et al. (2010) Measuring enzyme activities under standardized in vivo-like conditions for systems biology. FEBS J 277(3):749-760.
-
(2010)
FEBS J
, vol.277
, Issue.3
, pp. 749-760
-
-
Van Eunen, K.1
-
11
-
-
84855703671
-
Standardized assay medium to measure Lactococcus lactis enzyme activities while mimicking intracellular conditions
-
Goel A, Santos F, Vos WM, Teusink B, Molenaar D (2012) Standardized assay medium to measure Lactococcus lactis enzyme activities while mimicking intracellular conditions. Appl Environ Microbiol 78(1):134-143.
-
(2012)
Appl Environ Microbiol
, vol.78
, Issue.1
, pp. 134-143
-
-
Goel, A.1
Santos, F.2
Vos, W.M.3
Teusink, B.4
Molenaar, D.5
-
12
-
-
84868194895
-
Why in vivo may not equal in vitro - New effectors revealed by measurement of enzymatic activities under the same in vivo-like assay conditions
-
García-Contreras R, Vos P, Westerhoff HV, Boogerd FC (2012) Why in vivo may not equal in vitro - New effectors revealed by measurement of enzymatic activities under the same in vivo-like assay conditions. FEBS J 279(22):4145-4159.
-
(2012)
FEBS J
, vol.279
, Issue.22
, pp. 4145-4159
-
-
García-Contreras, R.1
Vos, P.2
Westerhoff, H.V.3
Boogerd, F.C.4
-
13
-
-
27244440301
-
Biochemical networks with uncertain parameters
-
Liebermeister W, Klipp E (2005) Biochemical networks with uncertain parameters. IEE Proc Systems Biol 152(3):97-107.
-
(2005)
IEE Proc Systems Biol
, vol.152
, Issue.3
, pp. 97-107
-
-
Liebermeister, W.1
Klipp, E.2
-
14
-
-
78650082315
-
Parameter balancing in kinetic models of cell metabolism
-
Lubitz T, Schulz M, Klipp E, Liebermeister W (2010) Parameter balancing in kinetic models of cell metabolism. J Phys Chem B 114(49):16298-16303.
-
(2010)
J Phys Chem B
, vol.114
, Issue.49
, pp. 16298-16303
-
-
Lubitz, T.1
Schulz, M.2
Klipp, E.3
Liebermeister, W.4
-
15
-
-
79953661070
-
Genome-scale metabolic modeling elucidates the role of proliferative adaptation in causing the Warburg effect
-
Shlomi T, Benyamini T, Gottlieb E, Sharan R, Ruppin E (2011) Genome-scale metabolic modeling elucidates the role of proliferative adaptation in causing the Warburg effect. PLOS Comput Biol 7(3):e1002018.
-
(2011)
PLOS Comput Biol
, vol.7
, Issue.3
, pp. e1002018
-
-
Shlomi, T.1
Benyamini, T.2
Gottlieb, E.3
Sharan, R.4
Ruppin, E.5
-
16
-
-
33748605597
-
Kinetic modeling of tricarboxylic acid cycle and glyoxylate bypass in Mycobacterium tuberculosis, and its application to assessment of drug targets
-
Singh VK, Ghosh I (2006) Kinetic modeling of tricarboxylic acid cycle and glyoxylate bypass in Mycobacterium tuberculosis, and its application to assessment of drug targets. Theor Biol Med Model 3:27.
-
(2006)
Theor Biol Med Model
, vol.3
, pp. 27
-
-
Singh, V.K.1
Ghosh, I.2
-
17
-
-
84883049898
-
A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes
-
Smallbone K, et al. (2013) A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes. FEBS Lett 587(17):2832-2841.
-
(2013)
FEBS Lett
, vol.587
, Issue.17
, pp. 2832-2841
-
-
Smallbone, K.1
-
18
-
-
82455192693
-
UDP-N-acetylglucosamine enolpyruvyl transferase as a potential target for antibacterial chemotherapy: Recent developments
-
Gautam A, Rishi P, Tewari R (2011) UDP-N-acetylglucosamine enolpyruvyl transferase as a potential target for antibacterial chemotherapy: Recent developments. Appl Microbiol Biotechnol 92(2):211-225.
-
(2011)
Appl Microbiol Biotechnol
, vol.92
, Issue.2
, pp. 211-225
-
-
Gautam, A.1
Rishi, P.2
Tewari, R.3
-
19
-
-
79958097953
-
The moderately efficient enzyme: Evolutionary and physicochemical trends shaping enzyme parameters
-
Bar-Even A, et al. (2011) The moderately efficient enzyme: Evolutionary and physicochemical trends shaping enzyme parameters. Biochemistry 50(21):4402-4410.
-
(2011)
Biochemistry
, vol.50
, Issue.21
, pp. 4402-4410
-
-
Bar-Even, A.1
-
20
-
-
84881087942
-
Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteins
-
Valgepea K, Adamberg K, Seiman A, Vilu R (2013) Escherichia coli achieves faster growth by increasing catalytic and translation rates of proteins. Mol Biosyst 9(9): 2344-2358.
-
(2013)
Mol Biosyst
, vol.9
, Issue.9
, pp. 2344-2358
-
-
Valgepea, K.1
Adamberg, K.2
Seiman, A.3
Vilu, R.4
-
21
-
-
84895727036
-
Pathway thermodynamics highlights kinetic obstacles in central metabolism
-
Noor E, et al. (2014) Pathway thermodynamics highlights kinetic obstacles in central metabolism. PLOS Comput Biol 10(2):e1003483.
-
(2014)
PLOS Comput Biol
, vol.10
, Issue.2
, pp. e1003483
-
-
Noor, E.1
-
22
-
-
84891800735
-
The Catalytic Site Atlas 2.0: Cataloging catalytic sites and residues identified in enzymes
-
Furnham N, et al. (2014) The Catalytic Site Atlas 2.0: Cataloging catalytic sites and residues identified in enzymes. Nucleic Acids Res 42(Database issue):D485-D489.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.DATABASE ISSUE
, pp. D485-D489
-
-
Furnham, N.1
-
23
-
-
80054069179
-
A comprehensive genome-scale reconstruction of Escherichia coli metabolism-2011
-
Orth JD, et al. (2011) A comprehensive genome-scale reconstruction of Escherichia coli metabolism-2011. Mol Syst Biol 7:535.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 535
-
-
Orth, J.D.1
-
24
-
-
84953737483
-
The quantitative and condition-dependent Escherichia coli proteome
-
Schmidt A, et al. (2016) The quantitative and condition-dependent Escherichia coli proteome. Nat Biotechnol 34(1):104-110.
-
(2016)
Nat Biotechnol
, vol.34
, Issue.1
, pp. 104-110
-
-
Schmidt, A.1
-
25
-
-
84925014516
-
Proteome reallocation in Escherichia coli with increasing specific growth rate
-
Peebo K, et al. (2015) Proteome reallocation in Escherichia coli with increasing specific growth rate. Mol Biosyst 11(4):1184-1193.
-
(2015)
Mol Biosyst
, vol.11
, Issue.4
, pp. 1184-1193
-
-
Peebo, K.1
-
26
-
-
0035125986
-
In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
-
Edwards JS, Ibarra RU, Palsson BO (2001) In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data. Nat Biotechnol 19(2): 125-130.
-
(2001)
Nat Biotechnol
, vol.19
, Issue.2
, pp. 125-130
-
-
Edwards, J.S.1
Ibarra, R.U.2
Palsson, B.O.3
-
27
-
-
0022493181
-
Fat synthesis in adipose tissue. An examination of stoichiometric constraints
-
Fell DA, Small JR (1986) Fat synthesis in adipose tissue. An examination of stoichiometric constraints. Biochem J 238(3):781-786.
-
(1986)
Biochem J
, vol.238
, Issue.3
, pp. 781-786
-
-
Fell, D.A.1
Small, J.R.2
-
29
-
-
34247612307
-
Multiple high-throughput analyses monitor the response of E. coli to perturbations
-
Ishii N, et al. (2007) Multiple high-throughput analyses monitor the response of E. coli to perturbations. Science 316(5824):593-597.
-
(2007)
Science
, vol.316
, Issue.5824
, pp. 593-597
-
-
Ishii, N.1
-
30
-
-
0022888115
-
Determination of bacterial cell volume with the Coulter Counter
-
Kubitschek HE, Friske JA (1986) Determination of bacterial cell volume with the Coulter Counter. J Bacteriol 168(3):1466-1467.
-
(1986)
J Bacteriol
, vol.168
, Issue.3
, pp. 1466-1467
-
-
Kubitschek, H.E.1
Friske, J.A.2
-
31
-
-
84889643157
-
Transcriptional regulation is insufficient to explain substrate-induced flux changes in Bacillus subtilis
-
Chubukov V, et al. (2013) Transcriptional regulation is insufficient to explain substrate-induced flux changes in Bacillus subtilis. Mol Syst Biol 9:709.
-
(2013)
Mol Syst Biol
, vol.9
, pp. 709
-
-
Chubukov, V.1
-
32
-
-
54249116230
-
Genetic regulatory mechanisms in the synthesis of proteins
-
Jacob F, Monod J (1961) Genetic regulatory mechanisms in the synthesis of proteins. J Mol Biol 3:318-356.
-
(1961)
J Mol Biol
, vol.3
, pp. 318-356
-
-
Jacob, F.1
Monod, J.2
-
33
-
-
0345863907
-
BRENDA, the enzyme database: Updates and major new developments
-
Schomburg I, et al. (2004) BRENDA, the enzyme database: Updates and major new developments. Nucleic Acids Res 32(Database issue):D431-D433.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.DATABASE ISSUE
, pp. D431-D433
-
-
Schomburg, I.1
-
34
-
-
0029584545
-
Metabolic regulation: A control analytic perspective
-
Hofmeyr JHS (1995) Metabolic regulation: A control analytic perspective. J Bioenerg Biomembr 27(5):479-490.
-
(1995)
J Bioenerg Biomembr
, vol.27
, Issue.5
, pp. 479-490
-
-
Hofmeyr, J.H.S.1
-
35
-
-
78650082704
-
Kinetic and thermodynamic aspects of enzyme control and regulation
-
Rohwer JM, Hofmeyr JHS (2010) Kinetic and thermodynamic aspects of enzyme control and regulation. J Phys Chem B 114(49):16280-16289.
-
(2010)
J Phys Chem B
, vol.114
, Issue.49
, pp. 16280-16289
-
-
Rohwer, J.M.1
Hofmeyr, J.H.S.2
-
36
-
-
84883054015
-
A note on the kinetics of enzyme action: A decomposition that highlights thermodynamic effects
-
Noor E, Flamholz A, LiebermeisterW, Bar-Even A, Milo R (2013) A note on the kinetics of enzyme action: A decomposition that highlights thermodynamic effects. FEBS Lett 587(17):2772-2777.
-
(2013)
FEBS Lett
, vol.587
, Issue.17
, pp. 2772-2777
-
-
Noor, E.1
Flamholz, A.2
Liebermeister, W.3
Bar-Even, A.4
Milo, R.5
-
37
-
-
68049100110
-
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
-
Bennett BD, et al. (2009) Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli. Nat Chem Biol 5(8):593-599.
-
(2009)
Nat Chem Biol
, vol.5
, Issue.8
, pp. 593-599
-
-
Bennett, B.D.1
-
38
-
-
84896510511
-
Quantification and mass isotopomer profiling of a-keto acids in central carbon metabolism
-
Zimmermann M, Sauer U, Zamboni N (2014) Quantification and mass isotopomer profiling of a-keto acids in central carbon metabolism. Anal Chem 86(6):3232-3237.
-
(2014)
Anal Chem
, vol.86
, Issue.6
, pp. 3232-3237
-
-
Zimmermann, M.1
Sauer, U.2
Zamboni, N.3
-
39
-
-
84876556918
-
EcoCyc: Fusing model organism databases with systems biology
-
Keseler IM, et al. (2013) EcoCyc: Fusing model organism databases with systems biology. Nucleic Acids Res 41(Database issue):D605-D612.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.DATABASE ISSUE
, pp. D605-D612
-
-
Keseler, I.M.1
-
40
-
-
79951552857
-
Die kinetik der invertinwirkung
-
German
-
Michaelis L, Menten ML (1913) Die kinetik der invertinwirkung [The kinetics of invertase action]. Biochem Z 49:352. German.
-
(1913)
Biochem Z
, vol.49
, pp. 352
-
-
Michaelis, L.1
Menten, M.L.2
-
41
-
-
44949164607
-
A further note on the kinetics of enzyme action
-
Briggs GE (1925) A further note on the kinetics of enzyme action. Biochem J 19(6): 1037-1038.
-
(1925)
Biochem J
, vol.19
, Issue.6
, pp. 1037-1038
-
-
Briggs, G.E.1
-
42
-
-
77954196484
-
Modular rate laws for enzymatic reactions: Thermodynamics, elasticities and implementation
-
Liebermeister W, Uhlendorf J, Klipp E (2010) Modular rate laws for enzymatic reactions: Thermodynamics, elasticities and implementation. Bioinformatics 26(12): 1528-1534.
-
(2010)
Bioinformatics
, vol.26
, Issue.12
, pp. 1528-1534
-
-
Liebermeister, W.1
Uhlendorf, J.2
Klipp, E.3
-
43
-
-
84954580390
-
Biochemical thermodynamics: Applications of Mathematica
-
Alberty RA (2006) Biochemical thermodynamics: Applications of Mathematica. Methods Biochem Anal 48:1-458.
-
(2006)
Methods Biochem Anal
, vol.48
, pp. 1-458
-
-
Alberty, R.A.1
-
44
-
-
8844259501
-
Thermodynamics of enzyme-catalyzed reactions-A database for quantitative biochemistry
-
Goldberg RN, Tewari YB, Bhat TN (2004) Thermodynamics of enzyme-catalyzed reactions-A database for quantitative biochemistry. Bioinformatics 20(16):2874-2877.
-
(2004)
Bioinformatics
, vol.20
, Issue.16
, pp. 2874-2877
-
-
Goldberg, R.N.1
Tewari, Y.B.2
Bhat, T.N.3
-
45
-
-
84880781653
-
Consistent estimation of Gibbs energy using component contributions
-
Noor E, Haraldsdóttir HS, Milo R, Fleming RMT (2013) Consistent estimation of Gibbs energy using component contributions. PLOS Comput Biol 9(7):e1003098.
-
(2013)
PLOS Comput Biol
, vol.9
, Issue.7
, pp. e1003098
-
-
Noor, E.1
Haraldsdóttir, H.S.2
Milo, R.3
Fleming, R.M.T.4
-
46
-
-
84902184652
-
Visual account of protein investment in cellular functions
-
Liebermeister W, et al. (2014) Visual account of protein investment in cellular functions. Proc Natl Acad Sci USA 111(23):8488-8493.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, Issue.23
, pp. 8488-8493
-
-
Liebermeister, W.1
-
47
-
-
0025124615
-
Subcloning, characterization, and affinity labeling of Escherichia coli glycinamide ribonucleotide transformylase
-
Inglese J, Johnson DL, Shiau A, Smith JM, Benkovic SJ (1990) Subcloning, characterization, and affinity labeling of Escherichia coli glycinamide ribonucleotide transformylase. Biochemistry 29(6):1436-1443.
-
(1990)
Biochemistry
, vol.29
, Issue.6
, pp. 1436-1443
-
-
Inglese, J.1
Johnson, D.L.2
Shiau, A.3
Smith, J.M.4
Benkovic, S.J.5
-
48
-
-
36249031916
-
Role of the amino acid invariants in the active site of MurG as evaluated by site-directed mutagenesis
-
Crouvoisier M, Auger G, Blanot D, Mengin-Lecreulx D (2007) Role of the amino acid invariants in the active site of MurG as evaluated by site-directed mutagenesis. Biochimie 89(12):1498-1508.
-
(2007)
Biochimie
, vol.89
, Issue.12
, pp. 1498-1508
-
-
Crouvoisier, M.1
Auger, G.2
Blanot, D.3
Mengin-Lecreulx, D.4
-
49
-
-
0030597987
-
4-O-Phosphoryl-l-threonine, a substrate of the pdxC (serC) gene product involved in Vitamin B 6 biosynthesis
-
Drewke C, et al. (1996) 4-O-Phosphoryl-l-threonine, a substrate of the pdxC (serC) gene product involved in vitamin B 6 biosynthesis. FEBS Lett 390(2):179-182.
-
(1996)
FEBS Lett
, vol.390
, Issue.2
, pp. 179-182
-
-
Drewke, C.1
-
50
-
-
61449109243
-
Symmetrical refolding of protein domains and subunits: Example of the dimeric two-domain 3-isopropylmalate dehydrogenases
-
Gráczer E, et al. (2009) Symmetrical refolding of protein domains and subunits: Example of the dimeric two-domain 3-isopropylmalate dehydrogenases. Biochemistry 48(5):1123-1134.
-
(2009)
Biochemistry
, vol.48
, Issue.5
, pp. 1123-1134
-
-
Gráczer, E.1
-
51
-
-
80054052318
-
An overview of enzymatic reagents for the removal of affinity tags
-
Waugh DS (2011) An overview of enzymatic reagents for the removal of affinity tags. Protein Expr Purif 80(2):283-293.
-
(2011)
Protein Expr Purif
, vol.80
, Issue.2
, pp. 283-293
-
-
Waugh, D.S.1
-
52
-
-
10744220945
-
Large scale production of biologically active Escherichia coli glutamyl-tRNA reductase from inclusion bodies
-
Schauer S, Lüer C, Moser J (2003) Large scale production of biologically active Escherichia coli glutamyl-tRNA reductase from inclusion bodies. Protein Expr Purif 31(2): 271-275.
-
(2003)
Protein Expr Purif
, vol.31
, Issue.2
, pp. 271-275
-
-
Schauer, S.1
Lüer, C.2
Moser, J.3
-
53
-
-
54249092318
-
Untangling the glutamate dehydrogenase allosteric nightmare
-
Smith TJ, Stanley CA (2008) Untangling the glutamate dehydrogenase allosteric nightmare. Trends Biochem Sci 33(11):557-564.
-
(2008)
Trends Biochem Sci
, vol.33
, Issue.11
, pp. 557-564
-
-
Smith, T.J.1
Stanley, C.A.2
-
54
-
-
47649125643
-
Allosteric regulation and catalysis emerge via a common route
-
Goodey NM, Benkovic SJ (2008) Allosteric regulation and catalysis emerge via a common route. Nat Chem Biol 4(8):474-482.
-
(2008)
Nat Chem Biol
, vol.4
, Issue.8
, pp. 474-482
-
-
Goodey, N.M.1
Benkovic, S.J.2
-
55
-
-
84899047521
-
Coordination of microbial metabolism
-
Chubukov V, Gerosa L, Kochanowski K, Sauer U (2014) Coordination of microbial metabolism. Nat Rev Microbiol 12(5):327-340.
-
(2014)
Nat Rev Microbiol
, vol.12
, Issue.5
, pp. 327-340
-
-
Chubukov, V.1
Gerosa, L.2
Kochanowski, K.3
Sauer, U.4
-
56
-
-
84930642844
-
Posttranslational regulation of microbial metabolism
-
Kochanowski K, Sauer U, Noor E (2015) Posttranslational regulation of microbial metabolism. Curr Opin Microbiol 27:10-17.
-
(2015)
Curr Opin Microbiol
, vol.27
, pp. 10-17
-
-
Kochanowski, K.1
Sauer, U.2
Noor, E.3
-
57
-
-
33747620056
-
Accelerating the reconstruction of genome-scale metabolic networks
-
Notebaart RA, van Enckevort FHJ, Francke C, Siezen RJ, Teusink B (2006) Accelerating the reconstruction of genome-scale metabolic networks. BMC Bioinformatics 7:296.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 296
-
-
Notebaart, R.A.1
Van Enckevort, F.H.J.2
Francke, C.3
Siezen, R.J.4
Teusink, B.5
-
58
-
-
84923913705
-
Programmed evolution for optimization of orthogonal metabolic output in bacteria
-
Eckdahl TT, et al. (2015) Programmed evolution for optimization of orthogonal metabolic output in bacteria. PLoS One 10(2):e0118322.
-
(2015)
PLoS One
, vol.10
, Issue.2
, pp. e0118322
-
-
Eckdahl, T.T.1
-
59
-
-
77952717854
-
Design and analysis of synthetic carbon fixation pathways
-
Bar-Even A, Noor E, NE, Milo R (2010) Design and analysis of synthetic carbon fixation pathways. Proc Natl Acad Sci USA 107(19):8889-8894.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.19
, pp. 8889-8894
-
-
Bar-Even, A.1
Noor, E.2
Milo R, N.E.3
-
60
-
-
84878966835
-
Glycolytic strategy as a tradeoff between energy yield and protein cost
-
Flamholz A, Noor E, Bar-Even A, Liebermeister W, Milo R (2013) Glycolytic strategy as a tradeoff between energy yield and protein cost. Proc Natl Acad Sci USA 110(24): 10039-10044.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.24
, pp. 10039-10044
-
-
Flamholz, A.1
Noor, E.2
Bar-Even, A.3
Liebermeister, W.4
Milo, R.5
-
61
-
-
84925426233
-
Computational protein design enables a novel one-carbon assimilation pathway
-
Siegel JB, et al. (2015) Computational protein design enables a novel one-carbon assimilation pathway. Proc Natl Acad Sci USA 112(12):3704-3709.
-
(2015)
Proc Natl Acad Sci USA
, vol.112
, Issue.12
, pp. 3704-3709
-
-
Siegel, J.B.1
-
62
-
-
3242795003
-
The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks
-
Holzhütter HG (2004) The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks. Eur J Biochem 271(14):2905-2922.
-
(2004)
Eur J Biochem
, vol.271
, Issue.14
, pp. 2905-2922
-
-
Holzhütter, H.G.1
-
63
-
-
77955141026
-
Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models
-
Lewis NE, et al. (2010) Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models. Mol Syst Biol 6:390.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 390
-
-
Lewis, N.E.1
-
65
-
-
84901306814
-
Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism
-
Machado D, Herrgård M (2014) Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism. PLOS Comput Biol 10(4):e1003580.
-
(2014)
PLOS Comput Biol
, vol.10
, Issue.4
, pp. e1003580
-
-
Machado, D.1
Herrgård, M.2
-
66
-
-
1642457253
-
The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
-
Mahadevan R, Schilling CH (2003) The effects of alternate optimal solutions in constraint-based genome-scale metabolic models. Metab Eng 5(4):264-276.
-
(2003)
Metab Eng
, vol.5
, Issue.4
, pp. 264-276
-
-
Mahadevan, R.1
Schilling, C.H.2
-
67
-
-
84962226898
-
Escherichia coli and Salmonella typhimurium: Cellular and molecular biology, Vol. 1 (of 2)
-
Booth I (1988) Escherichia coli and Salmonella typhimurium: Cellular and molecular biology, Vol. 1 (of 2). Trends Biochem Sci 13(12):493-494.
-
(1988)
Trends Biochem Sci
, vol.13
, Issue.12
, pp. 493-494
-
-
Booth, I.1
-
68
-
-
0032753923
-
Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism
-
Sauer U, et al. (1999) Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism. J Bacteriol 181(21): 6679-6688.
-
(1999)
J Bacteriol
, vol.181
, Issue.21
, pp. 6679-6688
-
-
Sauer, U.1
-
69
-
-
75549087930
-
BioNumbers-The database of key numbers in molecular and cell biology
-
Milo R, Jorgensen P, Moran U, Weber G, Springer M (2010) BioNumbers-The database of key numbers in molecular and cell biology. Nucleic Acids Res 38(Database issue): D750-D753.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.DATABASE ISSUE
, pp. D750-D753
-
-
Milo, R.1
Jorgensen, P.2
Moran, U.3
Weber, G.4
Springer, M.5
-
70
-
-
0029129087
-
Buoyant density of Escherichia coli is determined solely by the osmolarity of the culture medium
-
Baldwin WW, Myer R, Powell N, Anderson E, Koch AL (1995) Buoyant density of Escherichia coli is determined solely by the osmolarity of the culture medium. Arch Microbiol 164(2):155-157.
-
(1995)
Arch Microbiol
, vol.164
, Issue.2
, pp. 155-157
-
-
Baldwin, W.W.1
Myer, R.2
Powell, N.3
Anderson, E.4
Koch, A.L.5
-
71
-
-
0028795632
-
Kinetic limitation and cellular amount of pyridoxine (pyridoxamine) 5'-phosphate oxidase of Escherichia coli K-12
-
Zhao G, Winkler ME (1995) Kinetic limitation and cellular amount of pyridoxine (pyridoxamine) 5'-phosphate oxidase of Escherichia coli K-12. J Bacteriol 177(4): 883-891.
-
(1995)
J Bacteriol
, vol.177
, Issue.4
, pp. 883-891
-
-
Zhao, G.1
Winkler, M.E.2
-
72
-
-
84962273291
-
Fundamentals of enzyme kinetics (Cornish-Bowden, Athel)
-
Boeker EA (1981) Fundamentals of enzyme kinetics (Cornish-Bowden, Athel). J Chem Educ 58(3):A114.
-
(1981)
J Chem Educ
, vol.58
, Issue.3
, pp. A114
-
-
Boeker, E.A.1
|