-
1
-
-
0009461277
-
Interference of nonsense mutations with eukaryotic messenger RNA stability
-
Losson R, Lacroute F: Interference of nonsense mutations with eukaryotic messenger RNA stability. Proc Natl Acad Sci U S A. 1979; 76(10): 5134–7.
-
(1979)
Proc Natl Acad Sci U S A
, vol.76
, Issue.10
, pp. 5134-5137
-
-
Losson, R.1
Lacroute, F.2
-
2
-
-
0019733025
-
Unstable beta-globin mRNA in mRNA-deficient beta o thalassemia
-
Maquat LE, Kinniburgh AJ, Rachmilewitz EA, et al.: Unstable beta-globin mRNA in mRNA-deficient beta o thalassemia. Cell. 1981; 27(3 Pt 2): 543–53.
-
(1981)
Cell
, vol.27
, Issue.3
, pp. 543-553
-
-
Maquat, L.E.1
Kinniburgh, A.J.2
Rachmilewitz, E.A.3
-
3
-
-
0025138631
-
Nonsense suppressors partially revert the decrease of the mRNA level of a nonsense mutant allele in yeast
-
Gozalbo D, Hohmann S: Nonsense suppressors partially revert the decrease of the mRNA level of a nonsense mutant allele in yeast. Curr Genet. 1990; 17(1): 77–9.
-
(1990)
Curr Genet
, vol.17
, Issue.1
, pp. 77-79
-
-
Gozalbo, D.1
Hohmann, S.2
-
4
-
-
0347416978
-
Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5’ to 3’ mRNA decay pathways in yeast
-
He F, Li X, Spatrick P, et al.: Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5’ to 3’ mRNA decay pathways in yeast. Mol Cell. 2003; 12(6): 1439–52.
-
(2003)
Mol Cell
, vol.12
, Issue.6
, pp. 1439-1452
-
-
He, F.1
Li, X.2
Spatrick, P.3
-
5
-
-
6944256813
-
Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise
-
Mendell JT, Sharifi NA, Meyers JL, et al.: Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise. Nat Genet. 2004; 36(10): 1073–8.
-
(2004)
Nat Genet
, vol.36
, Issue.10
, pp. 1073-1078
-
-
Mendell, J.T.1
Sharifi, N.A.2
Meyers, J.L.3
-
6
-
-
25844435702
-
Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets
-
Rehwinkel J, Letunic I, Raes J, et al.: Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets. RNA. 2005; 11(10): 1530–44.
-
(2005)
RNA
, vol.11
, Issue.10
, pp. 1530-1544
-
-
Rehwinkel, J.1
Letunic, I.2
Raes, J.3
-
7
-
-
60549106018
-
Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis
-
Kurihara Y, Matsui A, Hanada K, et al.: Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis. Proc Natl Acad Sci U S A. 2009; 106(7): 2453–8.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, Issue.7
, pp. 2453-2458
-
-
Kurihara, Y.1
Matsui, A.2
Hanada, K.3
-
8
-
-
84857478172
-
A role for nonsense-mediated mRNA decay in plants: Pathogen responses are induced in Arabidopsis thaliana NMD mutants
-
Rayson S, Arciga-Reyes L, Wootton L, et al.: A role for nonsense-mediated mRNA decay in plants: Pathogen responses are induced in Arabidopsis thaliana NMD mutants. PLoS One. 2012; 7(2): E31917.
-
(2012)
Plos One
, vol.7
, Issue.2
-
-
Rayson, S.1
Arciga-Reyes, L.2
Wootton, L.3
-
9
-
-
34247330971
-
Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements
-
Lareau LF, Inada M, Green RE, et al.: Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements. Nature. 2007; 446(7138): 926–9.
-
(2007)
Nature
, vol.446
, Issue.7138
, pp. 926-929
-
-
Lareau, L.F.1
Inada, M.2
Green, R.E.3
-
10
-
-
84988288865
-
Regulation of splicing factors by alternative splicing and NMD is conserved between kingdoms yet evolutionarily flexible
-
Lareau LF, Brenner SE: Regulation of splicing factors by alternative splicing and NMD is conserved between kingdoms yet evolutionarily flexible. Mol Biol Evol. 2015; 32(4): 1072–9.
-
(2015)
Mol Biol Evol
, vol.32
, Issue.4
, pp. 1072-1079
-
-
Lareau, L.F.1
Brenner, S.E.2
-
11
-
-
0027382460
-
MRNA surveillance by the Caenorhabditis elegans smg genes
-
Pulak R, Anderson P: MRNA surveillance by the Caenorhabditis elegans smg genes. Genes Dev. 1993; 7(10): 1885–97.
-
(1993)
Genes Dev
, vol.7
, Issue.10
, pp. 1885-1897
-
-
Pulak, R.1
Anderson, P.2
-
12
-
-
0026773782
-
Gene products that promote mRNA turnover in Saccharomyces cerevisiae
-
Leeds P, Wood JM, Lee BS, et al.: Gene products that promote mRNA turnover in Saccharomyces cerevisiae. Mol Cell Biol. 1992; 12(5): 2165–77.
-
(1992)
Mol Cell Biol
, vol.12
, Issue.5
, pp. 2165-2177
-
-
Leeds, P.1
Wood, J.M.2
Lee, B.S.3
-
13
-
-
0037382643
-
Looking at mRNA decay pathways through the window of molecular evolution
-
Culbertson MR, Leeds PF: Looking at mRNA decay pathways through the window of molecular evolution. Curr Opin Genet Dev. 2003; 13(2): 207–14.
-
(2003)
Curr Opin Genet Dev
, vol.13
, Issue.2
, pp. 207-214
-
-
Culbertson, M.R.1
Leeds, P.F.2
-
14
-
-
0034284394
-
Novel eIF4G domain homologues linking mRNA translation with nonsense-mediated mRNA decay
-
Ponting CP: Novel eIF4G domain homologues linking mRNA translation with nonsense-mediated mRNA decay. Trends Biochem Sci. 2000; 25(9): 423–6.
-
(2000)
Trends Biochem Sci
, vol.25
, Issue.9
, pp. 423-426
-
-
Ponting, C.P.1
-
15
-
-
0042068262
-
Complexes between the nonsense-mediated mRNA decay pathway factor human upf1 (Up-frameshift protein 1) and essential nonsense-mediated mRNA decay factors in HeLa cells
-
Schell T, Köcher T, Wilm M, et al.: Complexes between the nonsense-mediated mRNA decay pathway factor human upf1 (up-frameshift protein 1) and essential nonsense-mediated mRNA decay factors in HeLa cells. Biochem J. 2003; 373(Pt 3): 775–83.
-
(2003)
Biochem J
, vol.373
, pp. 775-783
-
-
Schell, T.1
Köcher, T.2
Wilm, M.3
-
16
-
-
1842473091
-
The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3
-
Kadlec J, Izaurralde E, Cusack S: The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3. Nat Struct Mol Biol. 2004; 11(4): 330–7.
-
(2004)
Nat Struct Mol Biol
, vol.11
, Issue.4
, pp. 330-337
-
-
Kadlec, J.1
Izaurralde, E.2
Cusack, S.3
-
17
-
-
0032940802
-
Smg-7 is required for mRNA surveillance in Caenorhabditis elegans
-
Cali BM, Kuchma SL, Latham J, et al.: Smg-7 is required for mRNA surveillance in Caenorhabditis elegans. Genetics. 1999; 151(2): 605–16.
-
(1999)
Genetics
, vol.151
, Issue.2
, pp. 605-616
-
-
Cali, B.M.1
Kuchma, S.L.2
Latham, J.3
-
18
-
-
0035449691
-
Human SMG-1, a novel phosphatidylinositol 3-kinase-related protein kinase, associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense-mediated mRNA decay
-
Yamashita A, Ohnishi T, Kashima I, et al.: Human SMG-1, a novel phosphatidylinositol 3-kinase-related protein kinase, associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense-mediated mRNA decay. Genes Dev. 2001; 15(17): 2215–28.
-
(2001)
Genes Dev
, vol.15
, Issue.17
, pp. 2215-2228
-
-
Yamashita, A.1
Ohnishi, T.2
Kashima, I.3
-
19
-
-
4344570947
-
SMG-1 is a phosphatidylinositol kinase-related protein kinase required for nonsense-mediated mRNA Decay in Caenorhabditis elegans
-
Grimson A, O’Connor S, Newman CL, et al.: SMG-1 is a phosphatidylinositol kinase-related protein kinase required for nonsense-mediated mRNA Decay in Caenorhabditis elegans. Mol Cell Biol. 2004; 24(17): 7483–90.
-
(2004)
Mol Cell Biol
, vol.24
, Issue.17
, pp. 7483-7490
-
-
Grimson, A.1
O’Connor, S.2
Newman, C.L.3
-
20
-
-
32044435368
-
Binding of a novel SMG-1-Upf1- eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay
-
Kashima I, Yamashita A, Izumi N, et al.: Binding of a novel SMG-1-Upf1- eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay. Genes Dev. 2006; 20(3): 355–67.
-
(2006)
Genes Dev
, vol.20
, Issue.3
, pp. 355-367
-
-
Kashima, I.1
Yamashita, A.2
Izumi, N.3
-
21
-
-
84907399845
-
The RNA helicase DHX34 activates NMD by promoting a transition from the surveillance to the decay-inducing complex
-
Hug N, Cáceres JF: The RNA helicase DHX34 activates NMD by promoting a transition from the surveillance to the decay-inducing complex. Cell Rep. 2014; 8(6): 1845–56.
-
(2014)
Cell Rep
, vol.8
, Issue.6
, pp. 1845-1856
-
-
Hug, N.1
Cáceres, J.F.2
-
22
-
-
37849005006
-
NMD factors UPF2 and UPF3 bridge UPF1 to the exon junction complex and stimulate its RNA helicase activity
-
Chamieh H, Ballut L, Bonneau F, et al.: NMD factors UPF2 and UPF3 bridge UPF1 to the exon junction complex and stimulate its RNA helicase activity. Nat Struct Mol Biol. 2008; 15(1): 85–93.
-
(2008)
Nat Struct Mol Biol
, vol.15
, Issue.1
, pp. 85-93
-
-
Chamieh, H.1
Ballut, L.2
Bonneau, F.3
-
23
-
-
13944259434
-
SMG7 is a 14-3-3-like adaptor in the nonsense-mediated mRNA decay pathway
-
Fukuhara N, Ebert J, Unterholzner L, et al.: SMG7 is a 14-3-3-like adaptor in the nonsense-mediated mRNA decay pathway. Mol Cell. 2005; 17(4): 537–47.
-
(2005)
Mol Cell
, vol.17
, Issue.4
, pp. 537-547
-
-
Fukuhara, N.1
Ebert, J.2
Unterholzner, L.3
-
24
-
-
0037279012
-
Characterization of human Smg5/7a: A protein with similarities to Caenorhabditis elegans SMG5 and SMG7 that functions in the dephosphorylation of Upf1
-
Chiu SY, Serin G, Ohara O, et al.: Characterization of human Smg5/7a: A protein with similarities to Caenorhabditis elegans SMG5 and SMG7 that functions in the dephosphorylation of Upf1. RNA. 2003; 9(1): 77–87.
-
(2003)
RNA
, vol.9
, Issue.1
, pp. 77-87
-
-
Chiu, S.Y.1
Serin, G.2
Ohara, O.3
-
25
-
-
0037415691
-
SMG-5, required for C.Elegans nonsensemediated mRNA decay, associates with SMG-2 and protein phosphatase 2A
-
Anders KR, Grimson A, Anderson P: SMG-5, required for C.elegans nonsensemediated mRNA decay, associates with SMG-2 and protein phosphatase 2A. EMBO J. 2003; 22(3): 641–50.
-
(2003)
EMBO J
, vol.22
, Issue.3
, pp. 641-650
-
-
Anders, K.R.1
Grimson, A.2
Anderson, P.3
-
26
-
-
10744232514
-
Phosphorylation of hUPF1 induces formation of mRNA surveillance complexes containing hSMG-5 and hSMG-7
-
Ohnishi T, Yamashita A, Kashima I, et al.: Phosphorylation of hUPF1 induces formation of mRNA surveillance complexes containing hSMG-5 and hSMG-7. Mol Cell. 2003; 12(5): 1187–200.
-
(2003)
Mol Cell
, vol.12
, Issue.5
, pp. 1187-1200
-
-
Ohnishi, T.1
Yamashita, A.2
Kashima, I.3
-
27
-
-
8844245615
-
SMG7 acts as a molecular link between mRNA surveillance and mRNA decay
-
Unterholzner L, Izaurralde E: SMG7 acts as a molecular link between mRNA surveillance and mRNA decay. Mol Cell. 2004; 16(4): 587–96.
-
(2004)
Mol Cell
, vol.16
, Issue.4
, pp. 587-596
-
-
Unterholzner, L.1
Izaurralde, E.2
-
28
-
-
57049126216
-
SMG6 is the catalytic endonuclease that cleaves mRNAs containing nonsense codons in metazoan
-
Huntzinger E, Kashima I, Fauser M, et al.: SMG6 is the catalytic endonuclease that cleaves mRNAs containing nonsense codons in metazoan. RNA. 2008; 14(12): 2609–17.
-
(2008)
RNA
, vol.14
, Issue.12
, pp. 2609-2617
-
-
Huntzinger, E.1
Kashima, I.2
Fauser, M.3
-
29
-
-
58149265041
-
SMG6 promotes endonucleolytic cleavage of nonsense mRNA in human cells
-
Eberle AB, Lykke-Andersen S, Mühlemann O, et al.: SMG6 promotes endonucleolytic cleavage of nonsense mRNA in human cells. Nat Struct Mol Biol. 2009; 16(1): 49–55.
-
(2009)
Nat Struct Mol Biol
, vol.16
, Issue.1
, pp. 49-55
-
-
Eberle, A.B.1
Lykke-Andersen, S.2
Mühlemann, O.3
-
30
-
-
34247556560
-
Mechanistic insights and identification of two novel factors in the C. Elegans NMD pathway
-
Longman D, Plasterk RH, Johnstone IL, et al.: Mechanistic insights and identification of two novel factors in the C. elegans NMD pathway. Genes Dev. 2007; 21(9): 1075–85.
-
(2007)
Genes Dev
, vol.21
, Issue.9
, pp. 1075-1085
-
-
Longman, D.1
Plasterk, R.H.2
Johnstone, I.L.3
-
31
-
-
84884935892
-
DHX34 and NBAS form part of an autoregulatory NMD circuit that regulates endogenous RNA targets in human cells, zebrafish and Caenorhabditis elegans
-
Longman D, Hug N, Keith M, et al.: DHX34 and NBAS form part of an autoregulatory NMD circuit that regulates endogenous RNA targets in human cells, zebrafish and Caenorhabditis elegans. Nucleic Acids Res. 2013; 41(17): 8319–31.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.17
, pp. 8319-8331
-
-
Longman, D.1
Hug, N.2
Keith, M.3
-
32
-
-
65449178454
-
SMG-8 and SMG-9, two novel subunits of the SMG-1 complex, regulate remodeling of the mRNA surveillance complex during nonsense-mediated mRNA decay
-
Yamashita A, Izumi N, Kashima I, et al.: SMG-8 and SMG-9, two novel subunits of the SMG-1 complex, regulate remodeling of the mRNA surveillance complex during nonsense-mediated mRNA decay. Genes Dev. 2009; 23(9): 1091–105.
-
(2009)
Genes Dev
, vol.23
, Issue.9
, pp. 1091-1105
-
-
Yamashita, A.1
Izumi, N.2
Kashima, I.3
-
33
-
-
58149291462
-
Human proline-rich nuclear receptor coregulatory protein 2 mediates an interaction between mRNA surveillance machinery and decapping complex
-
Cho H, Kim KM, Kim YK: Human proline-rich nuclear receptor coregulatory protein 2 mediates an interaction between mRNA surveillance machinery and decapping complex. Mol Cell. 2009; 33(1): 75–86.
-
(2009)
Mol Cell
, vol.33
, Issue.1
, pp. 75-86
-
-
Cho, H.1
Kim, K.M.2
Kim, Y.K.3
-
34
-
-
84869229156
-
Genetic characterization of smg-8 mutants reveals no role in C. Elegans nonsense mediated decay
-
Rosains J, Mango SE: Genetic characterization of smg-8 mutants reveals no role in C. elegans nonsense mediated decay. PLoS One. 2012; 7(11): E49490.
-
(2012)
Plos One
, vol.7
, Issue.11
-
-
Rosains, J.1
Mango, S.E.2
-
35
-
-
25844512736
-
Exon-junction complex components specify distinct routes of nonsense-mediated mRNA decay with differential cofactor requirements
-
Gehring NH, Kunz JB, Neu-Yilik G, et al.: Exon-junction complex components specify distinct routes of nonsense-mediated mRNA decay with differential cofactor requirements. Mol Cell. 2005; 20(1): 65–75.
-
(2005)
Mol Cell
, vol.20
, Issue.1
, pp. 65-75
-
-
Gehring, N.H.1
Kunz, J.B.2
Neu-Yilik, G.3
-
36
-
-
34247205419
-
An alternative branch of the nonsensemediated decay pathway
-
Chan WK, Huang L, Gudikote JP, et al.: An alternative branch of the nonsensemediated decay pathway. EMBO J. 2007; 26(7): 1820–30.
-
(2007)
EMBO J
, vol.26
, Issue.7
, pp. 1820-1830
-
-
Chan, W.K.1
Huang, L.2
Gudikote, J.P.3
-
37
-
-
84894295410
-
An alternative root for the eukaryote tree of life
-
He D, Fiz-Palacios O, Fu CJ, et al.: An alternative root for the eukaryote tree of life. Curr Biol. 2014; 24(4): 465–70.
-
(2014)
Curr Biol
, vol.24
, Issue.4
, pp. 465-470
-
-
He, D.1
Fiz-Palacios, O.2
Fu, C.J.3
-
38
-
-
24144503755
-
Myosin domain evolution and the primary divergence of eukaryotes
-
Richards TA, Cavalier-Smith T: Myosin domain evolution and the primary divergence of eukaryotes. Nature. 2005; 436(7054): 1113–8.
-
(2005)
Nature
, vol.436
, Issue.7054
, pp. 1113-1118
-
-
Richards, T.A.1
Cavalier-Smith, T.2
-
40
-
-
48349096149
-
Incomplete nonsense-mediated mRNA decay in Giardia lamblia
-
Chen YH, Su LH, Sun CH: Incomplete nonsense-mediated mRNA decay in Giardia lamblia. Int J Parasitol. 2008; 38(11): 1305–17.
-
(2008)
Int J Parasitol
, vol.38
, Issue.11
, pp. 1305-1317
-
-
Chen, Y.H.1
Su, L.H.2
Sun, C.H.3
-
41
-
-
80053047597
-
Is there a classical nonsense-mediated decay pathway in trypanosomes?
-
Delhi P, Queiroz R, Inchaustegui D, et al.: Is there a classical nonsense-mediated decay pathway in trypanosomes? PLoS One. 2011; 6(9): E25112.
-
(2011)
Plos One
, vol.6
, Issue.9
-
-
Delhi, P.1
Queiroz, R.2
Inchaustegui, D.3
-
42
-
-
84922518966
-
Evolution of parasitism along convergent lines: From ecology to genomics
-
Poulin R, Randhawa HS: Evolution of parasitism along convergent lines: From ecology to genomics. Parasitology. 2015; 142 Suppl 1: S6–15.
-
(2015)
Parasitology
, vol.142
-
-
Poulin, R.1
Randhawa, H.S.2
-
43
-
-
85036614133
-
Conservation of Nonsense-Mediated mRNA Decay Complex Components Throughout Eukaryotic Evolution
-
Causier B, Li Z, De Smet R, et al.: Conservation of Nonsense-Mediated mRNA Decay Complex Components Throughout Eukaryotic Evolution. Sci Rep. 2017; 7(1): 16692.
-
(2017)
Sci Rep
, vol.7
, Issue.1
, pp. 16692
-
-
Causier, B.1
Li, Z.2
De Smet, R.3
-
44
-
-
84889096702
-
SMG1 is an ancient nonsense-mediated mRNA decay effector
-
Lloyd JP, Davies B: SMG1 is an ancient nonsense-mediated mRNA decay effector. Plant J. 2013; 76(5): 800–10.
-
(2013)
Plant J
, vol.76
, Issue.5
, pp. 800-810
-
-
Lloyd, J.P.1
Davies, B.2
-
45
-
-
48049087429
-
Arabidopsis SMG7 protein is required for exit from meiosis
-
Riehs N, Akimcheva S, Puizina J, et al.: Arabidopsis SMG7 protein is required for exit from meiosis. J Cell Sci. 2008; 121(Pt 13): 2208–16.
-
(2008)
J Cell Sci
, vol.121
, pp. 2208-2216
-
-
Riehs, N.1
Akimcheva, S.2
Puizina, J.3
-
46
-
-
84889099630
-
Phosphorylation of the N- and C-terminal UPF1 domains plays a critical role in plant nonsense-mediated mRNA decay
-
Kerényi F, Wawer I, Sikorski PJ, et al.: Phosphorylation of the N- and C-terminal UPF1 domains plays a critical role in plant nonsense-mediated mRNA decay. Plant J. 2013; 76(5): 836–48.
-
(2013)
Plant J
, vol.76
, Issue.5
, pp. 836-848
-
-
Kerényi, F.1
Wawer, I.2
Sikorski, P.J.3
-
47
-
-
84871949409
-
The late steps of plant nonsensemediated mRNA decay
-
Mérai Z, Benkovics AH, Nyikó T, et al.: The late steps of plant nonsensemediated mRNA decay. Plant J. 2013; 73(1): 50–62.
-
(2013)
Plant J
, vol.73
, Issue.1
, pp. 50-62
-
-
Mérai, Z.1
Benkovics, A.H.2
Nyikó, T.3
-
48
-
-
38049082181
-
Saccharomyces cerevisiae Ebs1p is a putative ortholog of human Smg7 and promotes nonsense-mediated mRNA decay
-
Luke B, Azzalin CM, Hug N, et al.: Saccharomyces cerevisiae Ebs1p is a putative ortholog of human Smg7 and promotes nonsense-mediated mRNA decay. Nucleic Acids Res. 2007; 35(22): 7688–97.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.22
, pp. 7688-7697
-
-
Luke, B.1
Azzalin, C.M.2
Hug, N.3
-
49
-
-
33745817833
-
UPF1 is required for nonsensemediated mRNA decay (NMD) and RNAi in Arabidopsis
-
Arciga-Reyes L, Wootton L, Kieffer M, et al.: UPF1 is required for nonsensemediated mRNA decay (NMD) and RNAi in Arabidopsis. Plant J. 2006; 47(3): 480–9.
-
(2006)
Plant J
, vol.47
, Issue.3
, pp. 480-489
-
-
Arciga-Reyes, L.1
Wootton, L.2
Kieffer, M.3
-
50
-
-
44649127573
-
Inter-kingdom conservation of mechanism of nonsense-mediated mRNA decay
-
Kerényi Z, Mérai Z, Hiripi L, et al.: Inter-kingdom conservation of mechanism of nonsense-mediated mRNA decay. EMBO J. 2008; 27(11): 1585–95.
-
(2008)
EMBO J
, vol.27
, Issue.11
, pp. 1585-1595
-
-
Kerényi, Z.1
Mérai, Z.2
Hiripi, L.3
-
51
-
-
84856858152
-
N- and C-terminal Upf1 phosphorylations create binding platforms for SMG-6 and SMG-5:SMG-7 during NMD
-
Okada-Katsuhata Y, Yamashita A, Kutsuzawa K, et al.: N- and C-terminal Upf1 phosphorylations create binding platforms for SMG-6 and SMG-5:SMG-7 during NMD. Nucleic Acids Res. 2012; 40(3): 1251–66.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.3
, pp. 1251-1266
-
-
Okada-Katsuhata, Y.1
Yamashita, A.2
Kutsuzawa, K.3
-
52
-
-
25844454826
-
Smg1 nonsense mutations do not abolish nonsense-mediated mRNA decay in Drosophila melanogaster
-
Chen Z, Smith KR, Batterham P, et al.: Smg1 nonsense mutations do not abolish nonsense-mediated mRNA decay in Drosophila melanogaster. Genetics. 2005; 171(1): 403–6.
-
(2005)
Genetics
, vol.171
, Issue.1
, pp. 403-406
-
-
Chen, Z.1
Smith, K.R.2
Batterham, P.3
-
53
-
-
33846015866
-
Functions of the nonsense-mediated mRNA decay pathway in Drosophila development
-
Metzstein MM, Krasnow MA: Functions of the nonsense-mediated mRNA decay pathway in Drosophila development. PLoS Genet. 2006; 2(12): E180.
-
(2006)
Plos Genet
, vol.2
, Issue.12
-
-
Metzstein, M.M.1
Krasnow, M.A.2
-
54
-
-
67650096774
-
Nonsense-mediated mRNA decay effectors are essential for zebrafish embryonic development and survival
-
Wittkopp N, Huntzinger E, Weiler C, et al.: Nonsense-mediated mRNA decay effectors are essential for zebrafish embryonic development and survival. Mol Cell Biol. 2009; 29(13): 3517–28.
-
(2009)
Mol Cell Biol
, vol.29
, Issue.13
, pp. 3517-3528
-
-
Wittkopp, N.1
Huntzinger, E.2
Weiler, C.3
-
55
-
-
0034649546
-
PIN domains in nonsense-mediated mRNA decay and RNAi
-
Clissold PM, Ponting CP: PIN domains in nonsense-mediated mRNA decay and RNAi. Curr Biol. 2000; 10(24): R888–90.
-
(2000)
Curr Biol
, vol.10
, Issue.24
-
-
Clissold, P.M.1
Ponting, C.P.2
-
56
-
-
0042025014
-
Nonsense-mediated mRNA decay in Drosophila: At the intersection of the yeast and mammalian pathways
-
Gatfield D, Unterholzner L, Ciccarelli FD, et al.: Nonsense-mediated mRNA decay in Drosophila: At the intersection of the yeast and mammalian pathways. EMBO J. 2003; 22(15): 3960–70.
-
(2003)
EMBO J
, vol.22
, Issue.15
, pp. 3960-3970
-
-
Gatfield, D.1
Unterholzner, L.2
Ciccarelli, F.D.3
-
57
-
-
37349043972
-
Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends
-
Azzalin CM, Reichenbach P, Khoriauli L, et al.: Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends. Science. 2007; 318(5851): 798–801.
-
(2007)
Science
, vol.318
, Issue.5851
, pp. 798-801
-
-
Azzalin, C.M.1
Reichenbach, P.2
Khoriauli, L.3
-
58
-
-
84896709592
-
Identification and functional analysis of novel phosphorylation sites in the RNA surveillance protein Upf1
-
Lasalde C, Rivera AV, León AJ, et al.: Identification and functional analysis of novel phosphorylation sites in the RNA surveillance protein Upf1. Nucleic Acids Res. 2014; 42(3): 1916–29.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.3
, pp. 1916-1929
-
-
Lasalde, C.1
Rivera, A.V.2
León, A.J.3
-
59
-
-
85027061624
-
Nonsense-mediated mRNA decay in Tetrahymena is EJC independent and requires a protozoa-specific nuclease
-
Tian M, Yang W, Zhang J, et al.: Nonsense-mediated mRNA decay in Tetrahymena is EJC independent and requires a protozoa-specific nuclease. Nucleic Acids Res. 2017; 45(11): 6848–63.
-
(2017)
Nucleic Acids Res
, vol.45
, Issue.11
, pp. 6848-6863
-
-
Tian, M.1
Yang, W.2
Zhang, J.3
-
60
-
-
84864052299
-
Drosophila mutants show NMD pathway activity is reduced, but not eliminated, in the absence of Smg6
-
Frizzell KA, Rynearson SG, Metzstein MM: Drosophila mutants show NMD pathway activity is reduced, but not eliminated, in the absence of Smg6. RNA. 2012; 18(8): 1475–86.
-
(2012)
RNA
, vol.18
, Issue.8
, pp. 1475-1486
-
-
Frizzell, K.A.1
Rynearson, S.G.2
Metzstein, M.M.3
-
61
-
-
2442596034
-
ATR regulates a G2-phase cell-cycle checkpoint in Arabidopsis thaliana
-
Culligan K, Tissier A, Britt A: ATR regulates a G2-phase cell-cycle checkpoint in Arabidopsis thaliana. Plant Cell. 2004; 16(5): 1091–104.
-
(2004)
Plant Cell
, vol.16
, Issue.5
, pp. 1091-1104
-
-
Culligan, K.1
Tissier, A.2
Britt, A.3
-
62
-
-
0025786141
-
The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codon
-
Leeds P, Peltz SW, Jacobson A, et al.: The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codon. Genes Dev. 1991; 5(12A): 2303–14.
-
(1991)
Genes Dev
, vol.5
, Issue.12A
, pp. 2303-2314
-
-
Leeds, P.1
Peltz, S.W.2
Jacobson, A.3
-
63
-
-
0035795577
-
Molecular identification of smg-4, required for mRNA surveillance in C. Elegans
-
Aronoff R, Baran R, Hodgkin J: Molecular identification of smg-4, required for mRNA surveillance in C. elegans. Gene. 2001; 268(1–2): 153–64.
-
(2001)
Gene
, vol.268
, Issue.1-2
, pp. 153-164
-
-
Aronoff, R.1
Baran, R.2
Hodgkin, J.3
-
64
-
-
11144354393
-
Shin-I T, et al.: Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D
-
Matsuzaki M, Misumi O, Shin-I T, et al.: Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature. 2004; 428(6983): 653–7.
-
(2004)
Nature
, vol.428
, Issue.6983
, pp. 653-657
-
-
Matsuzaki, M.1
Misumi, O.2
-
65
-
-
0034193569
-
Pre-mRNA splicing alters mRNP composition: Evidence for stable association of proteins at exon-exon junctions
-
Le Hir H, Moore MJ, Maquat LE: Pre-mRNA splicing alters mRNP composition: Evidence for stable association of proteins at exon-exon junctions. Genes Dev. 2000; 14(9): 1098–108.
-
(2000)
Genes Dev
, vol.14
, Issue.9
, pp. 1098-1108
-
-
Le Hir, H.1
Moore, M.J.2
Maquat, L.E.3
-
66
-
-
0034672093
-
The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions
-
Le Hir H, Izaurralde E, Maquat LE, et al.: The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions. EMBO J. 2000; 19(24): 6860–9.
-
(2000)
EMBO J
, vol.19
, Issue.24
, pp. 6860-6869
-
-
Le Hir, H.1
Izaurralde, E.2
Maquat, L.E.3
-
67
-
-
65249119729
-
Disassembly of exon junction complexes by PYM
-
Gehring NH, Lamprinaki S, Kulozik AE, et al.: Disassembly of exon junction complexes by PYM. Cell. 2009; 137(3): 536–48.
-
(2009)
Cell
, vol.137
, Issue.3
, pp. 536-548
-
-
Gehring, N.H.1
Lamprinaki, S.2
Kulozik, A.E.3
-
68
-
-
0038814325
-
Y14 and hUpf3b form an NMD-activating complex
-
Gehring NH, Neu-Yilik G, Schell T, et al.: Y14 and hUpf3b form an NMD-activating complex. Mol Cell. 2003; 11(4): 939–49.
-
(2003)
Mol Cell
, vol.11
, Issue.4
, pp. 939-949
-
-
Gehring, N.H.1
Neu-Yilik, G.2
Schell, T.3
-
69
-
-
1642570265
-
A nuclear translation-like factor eIF4AIII is recruited to the mRNA during splicing and functions in nonsense-mediated decay
-
Ferraiuolo MA, Lee CS, Ler LW, et al.: A nuclear translation-like factor eIF4AIII is recruited to the mRNA during splicing and functions in nonsense-mediated decay. Proc Natl Acad Sci U S A. 2004; 101(12): 4118–23.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, Issue.12
, pp. 4118-4123
-
-
Ferraiuolo, M.A.1
Lee, C.S.2
Ler, L.W.3
-
70
-
-
77957771429
-
The exon junction complex differentially marks spliced junctions
-
Saulière J, Haque N, Harms S, et al.: The exon junction complex differentially marks spliced junctions. Nat Struct Mol Biol. 2010; 17(10): 1269–71.
-
(2010)
Nat Struct Mol Biol
, vol.17
, Issue.10
, pp. 1269-1271
-
-
Saulière, J.1
Haque, N.2
Harms, S.3
-
71
-
-
84939456263
-
Control of mRNA Stability in Fungi by NMD, EJC and CBC Factors Through 3’UTR Introns
-
Zhang Y, Sachs MS: Control of mRNA Stability in Fungi by NMD, EJC and CBC Factors Through 3’UTR Introns. Genetics. 2015; 200(4): 1133–48.
-
(2015)
Genetics
, vol.200
, Issue.4
, pp. 1133-1148
-
-
Zhang, Y.1
Sachs, M.S.2
-
72
-
-
33845622065
-
Both introns and long 3’-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants
-
Kertész S, Kerényi Z, Mérai Z, et al.: Both introns and long 3’-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants. Nucleic Acids Res. 2006; 34(21): 6147–57.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.21
, pp. 6147-6157
-
-
Kertész, S.1
Kerényi, Z.2
Mérai, Z.3
-
73
-
-
84888407848
-
Nonsense-mediated decay of alternative precursor mRNA splicing variants is a major determinant of the Arabidopsis steady state transcriptome
-
Drechsel G, Kahles A, Kesarwani AK, et al.: Nonsense-mediated decay of alternative precursor mRNA splicing variants is a major determinant of the Arabidopsis steady state transcriptome. Plant Cell. 2013; 25(10): 3726–42.
-
(2013)
Plant Cell
, vol.25
, Issue.10
, pp. 3726-3742
-
-
Drechsel, G.1
Kahles, A.2
Kesarwani, A.K.3
-
74
-
-
85052924574
-
The loss of SMG1 causes defects in quality control pathways in Physcomitrella patens
-
Lloyd JPB, Lang D, Zimmer AD, et al.: The loss of SMG1 causes defects in quality control pathways in Physcomitrella patens. Nucleic Acids Res. 2018; 46(11): 5822–5836, [cited 2018 Mar 28].
-
(2018)
Nucleic Acids Res
, vol.46
, Issue.11
, pp. 5822-5836
-
-
Lloyd, J.1
Lang, D.2
Zimmer, A.D.3
-
75
-
-
81755172088
-
Autoregulation of the nonsense-mediated mRNA decay pathway in human cells
-
Yepiskoposyan H, Aeschimann F, Nilsson D, et al.: Autoregulation of the nonsense-mediated mRNA decay pathway in human cells. RNA. 2011; 17(12): 2108–18.
-
(2011)
RNA
, vol.17
, Issue.12
, pp. 2108-2118
-
-
Yepiskoposyan, H.1
Aeschimann, F.2
Nilsson, D.3
-
76
-
-
84885069820
-
Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay
-
Hurt JA, Robertson AD, Burge CB: Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay. Genome Res. 2013; 23(10): 1636–50.
-
(2013)
Genome Res
, vol.23
, Issue.10
, pp. 1636-1650
-
-
Hurt, J.A.1
Robertson, A.D.2
Burge, C.B.3
-
77
-
-
84987641578
-
The rules and impact of nonsense-mediated mRNA decay in human cancers
-
Lindeboom RG, Supek F, Lehner B: The rules and impact of nonsense-mediated mRNA decay in human cancers. Nat Genet. 2016; 48(10): 1112–8.
-
(2016)
Nat Genet
, vol.48
, Issue.10
, pp. 1112-1118
-
-
Lindeboom, R.G.1
Supek, F.2
Lehner, B.3
-
78
-
-
85011092575
-
Transcriptome-wide identification of NMD-targeted human mRNAs reveals extensive redundancy between SMG6- and SMG7-mediated degradation pathways
-
Colombo M, Karousis ED, Bourquin J, et al.: Transcriptome-wide identification of NMD-targeted human mRNAs reveals extensive redundancy between SMG6- and SMG7-mediated degradation pathways. RNA. 2017; 23(2): 189–201.
-
(2017)
RNA
, vol.23
, Issue.2
, pp. 189-201
-
-
Colombo, M.1
Karousis, E.D.2
Bourquin, J.3
-
79
-
-
8544253956
-
A faux 3’ -UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay
-
Amrani N, Ganesan R, Kervestin S, et al.: A faux 3’ -UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay. Nature. 2004; 432(7013): 112–8.
-
(2004)
Nature
, vol.432
, Issue.7013
, pp. 112-118
-
-
Amrani, N.1
Ganesan, R.2
Kervestin, S.3
-
80
-
-
33947609704
-
A conserved role for cytoplasmic poly(A)-binding protein 1 (PABPC1) in nonsense-mediated mRNA decay
-
Behm-Ansmant I, Gatfield D, Rehwinkel J, et al.: A conserved role for cytoplasmic poly(A)-binding protein 1 (PABPC1) in nonsense-mediated mRNA decay. EMBO J. 2007; 26(6): 1591–601.
-
(2007)
EMBO J
, vol.26
, Issue.6
, pp. 1591-1601
-
-
Behm-Ansmant, I.1
Gatfield, D.2
Rehwinkel, J.3
-
81
-
-
77958459763
-
Upf1 senses 3’UTR length to potentiate mRNA decay
-
Hogg JR, Goff SP: Upf1 senses 3’UTR length to potentiate mRNA decay. Cell. 2010; 143(3): 379–89.
-
(2010)
Cell
, vol.143
, Issue.3
, pp. 379-389
-
-
Hogg, J.R.1
Goff, S.P.2
-
82
-
-
84881477715
-
Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3′ UTRs
-
Zünd D, Gruber AR, Zavolan M, et al.: Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3′ UTRs. Nat Struct Mol Biol. 2013; 20(8): 936–43.
-
(2013)
Nat Struct Mol Biol
, vol.20
, Issue.8
, pp. 936-943
-
-
Zünd, D.1
Gruber, A.R.2
Zavolan, M.3
-
83
-
-
84928042455
-
Identification of elements in human long 3’ UTRs that inhibit nonsense-mediated decay
-
Toma KG, Rebbapragada I, Durand S, et al.: Identification of elements in human long 3’ UTRs that inhibit nonsense-mediated decay. RNA. 2015; 21(5): 887–97.
-
(2015)
RNA
, vol.21
, Issue.5
, pp. 887-897
-
-
Toma, K.G.1
Rebbapragada, I.2
Durand, S.3
-
84
-
-
84958580914
-
Polypyrimidine tract binding protein 1 protects mRNAs from recognition by the nonsense-mediated mRNA decay pathway
-
Ge Z, Quek BL, Beemon KL, et al.: Polypyrimidine tract binding protein 1 protects mRNAs from recognition by the nonsense-mediated mRNA decay pathway. eLife. 2016; 5: Pii: E11155.
-
(2016)
Elife
, vol.5
-
-
Ge, Z.1
Quek, B.L.2
Beemon, K.L.3
-
85
-
-
0027219029
-
Jacobson A: MRNA destabilization triggered by premature translational termination depends on at least three cis-acting sequence elements and one trans-acting factor
-
Peltz SW, Brown AH, Jacobson A: MRNA destabilization triggered by premature translational termination depends on at least three cis-acting sequence elements and one trans-acting factor. Genes Dev. 1993; 7(9): 1737–54.
-
(1993)
Genes Dev
, vol.7
, Issue.9
, pp. 1737-1754
-
-
Peltz, S.W.1
Brown, A.H.2
-
86
-
-
0033679905
-
The yeast hnRNP-like protein Hrp1/Nab4 marks a transcript for nonsense-mediated mRNA decay
-
González CI, Ruiz-Echevarría MJ, Vasudevan S, et al.: The yeast hnRNP-like protein Hrp1/Nab4 marks a transcript for nonsense-mediated mRNA decay. Mol Cell. 2000; 5(3): 489–99.
-
(2000)
Mol Cell
, vol.5
, Issue.3
, pp. 489-499
-
-
González, C.I.1
Ruiz-Echevarría, M.J.2
Vasudevan, S.3
-
87
-
-
77951976646
-
Splicing-dependent NMD does not require the EJC in Schizosaccharomyces pombe
-
Wen J, Brogna S: Splicing-dependent NMD does not require the EJC in Schizosaccharomyces pombe. EMBO J. 2010; 29(9): 1537–51.
-
(2010)
EMBO J
, vol.29
, Issue.9
, pp. 1537-1551
-
-
Wen, J.1
Brogna, S.2
-
88
-
-
0031766755
-
Anderson P: MRNA surveillance mitigates genetic dominance in Caenorhabditis elegans
-
Cali BM, Anderson P: MRNA surveillance mitigates genetic dominance in Caenorhabditis elegans. Mol Gen Genet. 1998; 260(2–3): 176–84.
-
(1998)
Mol Gen Genet
, vol.260
, Issue.2-3
, pp. 176-184
-
-
Cali, B.M.1
-
89
-
-
33749057696
-
Nonsense-mediated mRNA decay modulates clinical outcome of genetic disease
-
Khajavi M, Inoue K, Lupski JR: Nonsense-mediated mRNA decay modulates clinical outcome of genetic disease. Eur J Hum Genet. 2006; 14(10): 1074–81.
-
(2006)
Eur J Hum Genet
, vol.14
, Issue.10
, pp. 1074-1081
-
-
Khajavi, M.1
Inoue, K.2
Lupski, J.R.3
-
90
-
-
77956663450
-
NMD: RNA biology meets human genetic medicine
-
Bhuvanagiri M, Schlitter AM, Hentze MW, et al.: NMD: RNA biology meets human genetic medicine. Biochem J. 2010; 430(3): 365–77.
-
(2010)
Biochem J
, vol.430
, Issue.3
, pp. 365-377
-
-
Bhuvanagiri, M.1
Schlitter, A.M.2
Hentze, M.W.3
-
91
-
-
0020447816
-
Selfish DNA: A sexually-transmitted nuclear parasite
-
Hickey DA: Selfish DNA: A sexually-transmitted nuclear parasite. Genetics. 1982; 101(3–4): 519–31.
-
(1982)
Genetics
, vol.101
, Issue.3-4
, pp. 519-531
-
-
Hickey, D.A.1
-
92
-
-
0029818881
-
Sex and the spread of retrotransposon Ty3 in experimental populations of Saccharomyces cerevisiae
-
Zeyl C, Bell G, Green DM: Sex and the spread of retrotransposon Ty3 in experimental populations of Saccharomyces cerevisiae. Genetics. 1996; 143(4): 1567–77.
-
(1996)
Genetics
, vol.143
, Issue.4
, pp. 1567-1577
-
-
Zeyl, C.1
Bell, G.2
Green, D.M.3
-
93
-
-
0025810123
-
Intron phylogeny: A new hypothesis
-
Cavalier-Smith T: Intron phylogeny: A new hypothesis. Trends Genet. 1991; 7(5): 145–8.
-
(1991)
Trends Genet
, vol.7
, Issue.5
, pp. 145-148
-
-
Cavalier-Smith, T.1
-
94
-
-
33644783626
-
Introns and the origin of nucleus-cytosol compartmentalization
-
Martin W, Koonin EV: Introns and the origin of nucleus-cytosol compartmentalization. Nature. 2006; 440(7080): 41–5.
-
(2006)
Nature
, vol.440
, Issue.7080
, pp. 41-45
-
-
Martin, W.1
Koonin, E.V.2
-
95
-
-
84993945126
-
Mechanism for DNA transposons to generate introns on genomic scales
-
Huff JT, Zilberman D, Roy SW: Mechanism for DNA transposons to generate introns on genomic scales. Nature. 2016; 538(7626): 533–6.
-
(2016)
Nature
, vol.538
, Issue.7626
, pp. 533-536
-
-
Huff, J.T.1
Zilberman, D.2
Roy, S.W.3
-
96
-
-
76749130220
-
Nonsense-mediated decay enables intron gain in Drosophila
-
Farlow A, Meduri E, Dolezal M, et al.: Nonsense-mediated decay enables intron gain in Drosophila. PLoS Genet. 2010; 6(1): E1000819.
-
(2010)
Plos Genet
, vol.6
, Issue.1
-
-
Farlow, A.1
Meduri, E.2
Dolezal, M.3
|