-
1
-
-
34247197937
-
The Nonsense-Mediated Decay RNA surveillance pathway
-
Chang Y-F, Imam J, Wilkinson M, (2007) The Nonsense-Mediated Decay RNA surveillance pathway. Ann Rev Biochem 76: 51-74.
-
(2007)
Ann Rev Biochem
, vol.76
, pp. 51-74
-
-
Chang, Y.-F.1
Imam, J.2
Wilkinson, M.3
-
2
-
-
19444368979
-
Nonsense-mediated mRNA decay in mammals
-
Maquat LE, (2005) Nonsense-mediated mRNA decay in mammals. J Cell Sci 118: 1773-1776.
-
(2005)
J Cell Sci
, vol.118
, pp. 1773-1776
-
-
Maquat, L.E.1
-
4
-
-
9344248397
-
Nonsense-mediated decay does not occur within the yeast nucleus
-
Kuperwasser N, Brogna S, Dower K, Rosbash M, (2004) Nonsense-mediated decay does not occur within the yeast nucleus. Rna 10: 1907-1915.
-
(2004)
Rna
, vol.10
, pp. 1907-1915
-
-
Kuperwasser, N.1
Brogna, S.2
Dower, K.3
Rosbash, M.4
-
5
-
-
34548294617
-
Communication with the exon-junction complex and activation of nonsense-mediated decay by human Upf proteins occur in the cytoplasm
-
Singh G, Jakob S, Kleedehn M, Lykke-Andersen J, (2007) Communication with the exon-junction complex and activation of nonsense-mediated decay by human Upf proteins occur in the cytoplasm. Molecualr Cell 27: 780-792.
-
(2007)
Molecualr Cell
, vol.27
, pp. 780-792
-
-
Singh, G.1
Jakob, S.2
Kleedehn, M.3
Lykke-Andersen, J.4
-
6
-
-
0029842901
-
Interaction between Nmd2p and Upf1p is required for activity but not for dominant-negative inhibition of the nonsense-mediated mRNA decay pathway in yeast
-
He F, Brown A, Jacobson A, (1996) Interaction between Nmd2p and Upf1p is required for activity but not for dominant-negative inhibition of the nonsense-mediated mRNA decay pathway in yeast. RNA 2: 153-170.
-
(1996)
RNA
, vol.2
, pp. 153-170
-
-
He, F.1
Brown, A.2
Jacobson, A.3
-
7
-
-
33745817833
-
UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis
-
Arciga-Reyes L, Wootton L, Kieffer M, Davies B, (2006) UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis. Plant J 47: 480-489.
-
(2006)
Plant J
, vol.47
, pp. 480-489
-
-
Arciga-Reyes, L.1
Wootton, L.2
Kieffer, M.3
Davies, B.4
-
8
-
-
0042068262
-
Complexes between the nonsense-mediated mRNA decay pathway factor human upf1 (up-frameshift protein 1) and essential nonsense-mediated mRNA decay factors in HeLa cells
-
Schell T, Köcher T, Wilm M, Seraphin B, Kulozik A, et al. (2003) Complexes between the nonsense-mediated mRNA decay pathway factor human upf1 (up-frameshift protein 1) and essential nonsense-mediated mRNA decay factors in HeLa cells. Biochem J 373: 775-783.
-
(2003)
Biochem J
, vol.373
, pp. 775-783
-
-
Schell, T.1
Köcher, T.2
Wilm, M.3
Seraphin, B.4
Kulozik, A.5
-
9
-
-
34547876450
-
Caenorhabditis elegans SMG-2 selectively marks mRNAs containing premature translation termination codons
-
Johns L, Grimson A, Kuchma S, Newman C, Anderson P, (2007) Caenorhabditis elegans SMG-2 selectively marks mRNAs containing premature translation termination codons. Mol Cell Biol 27: 5630-5638.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 5630-5638
-
-
Johns, L.1
Grimson, A.2
Kuchma, S.3
Newman, C.4
Anderson, P.5
-
10
-
-
0031025296
-
Upf1p, Nmd2p, and Upf3p are interacting components of the yeast nonsense-mediated mRNA decay pathway
-
He F, Brown A, Jacobson A, (1997) Upf1p, Nmd2p, and Upf3p are interacting components of the yeast nonsense-mediated mRNA decay pathway. Mol Cell Biol 17: 1580-1594.
-
(1997)
Mol Cell Biol
, vol.17
, pp. 1580-1594
-
-
He, F.1
Brown, A.2
Jacobson, A.3
-
11
-
-
0029791449
-
Genetic and biochemical characterization of mutations in the ATPase and helicase regions of the Upf1 protein
-
Weng Y, Czaplinski K, Peltz S, (1996) Genetic and biochemical characterization of mutations in the ATPase and helicase regions of the Upf1 protein. Mol Cell Biol 16: 5477-5490.
-
(1996)
Mol Cell Biol
, vol.16
, pp. 5477-5490
-
-
Weng, Y.1
Czaplinski, K.2
Peltz, S.3
-
12
-
-
0032544062
-
A mutated human homologue to yeast Upf1 protein has a dominant-negative effect on the decay of nonsense-containing mRNAs in mammalian cells
-
Sun X, Perlick H, Dietz H, Maquat L, (1998) A mutated human homologue to yeast Upf1 protein has a dominant-negative effect on the decay of nonsense-containing mRNAs in mammalian cells. Proc Natl Acad Sci U S A 95: 10009-10014.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 10009-10014
-
-
Sun, X.1
Perlick, H.2
Dietz, H.3
Maquat, L.4
-
13
-
-
48349096149
-
Incomplete nonsense-mediated mRNA decay in Giardia lamblia
-
Chen Y-H, Su L-H, Sun C-H, (2008) Incomplete nonsense-mediated mRNA decay in Giardia lamblia. Int J Parasitol 38: 1305-1317.
-
(2008)
Int J Parasitol
, vol.38
, pp. 1305-1317
-
-
Chen, Y.-H.1
Su, L.-H.2
Sun, C.-H.3
-
14
-
-
33749239197
-
Crystal structure of the UPF2-interacting domain of nonsense-mediated mRNA decay factor UPF1
-
Kadlec J, Guilligay D, Ravelli R, Cusack S, (2006) Crystal structure of the UPF2-interacting domain of nonsense-mediated mRNA decay factor UPF1. RNA 12: 1817-1824.
-
(2006)
RNA
, vol.12
, pp. 1817-1824
-
-
Kadlec, J.1
Guilligay, D.2
Ravelli, R.3
Cusack, S.4
-
15
-
-
40949148553
-
Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways
-
Ivanov P, Gehring N, Kunz J, Hentze M, Kulozik A, (2008) Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways. EMBO J 27: 736-747.
-
(2008)
EMBO J
, vol.27
, pp. 736-747
-
-
Ivanov, P.1
Gehring, N.2
Kunz, J.3
Hentze, M.4
Kulozik, A.5
-
16
-
-
1442325404
-
Overexpression of Upf1p compensates for mitochondrial splicing deficiency independently of its role in mRNA surveillance
-
de Pinto B, Lippolis R, Castaldo R, Altamura N, (2004) Overexpression of Upf1p compensates for mitochondrial splicing deficiency independently of its role in mRNA surveillance. Mol Microbiol 51: 1129-1142.
-
(2004)
Mol Microbiol
, vol.51
, pp. 1129-1142
-
-
de Pinto, B.1
Lippolis, R.2
Castaldo, R.3
Altamura, N.4
-
17
-
-
18844463753
-
Identifying the right stop: determining how the surveillance complex recognizes and degrades an aberrant mRNA
-
Ruiz-Echevarría M, González C, Peltz S, (1998) Identifying the right stop: determining how the surveillance complex recognizes and degrades an aberrant mRNA. EMBO J 17: 575-589.
-
(1998)
EMBO J
, vol.17
, pp. 575-589
-
-
Ruiz-Echevarría, M.1
González, C.2
Peltz, S.3
-
18
-
-
77958459763
-
Upf1 senses 3′UTR length to potentiate mRNA decay
-
Hogg J, Goff S, (2010) Upf1 senses 3′UTR length to potentiate mRNA decay. Cell 143: 379-389.
-
(2010)
Cell
, vol.143
, pp. 379-389
-
-
Hogg, J.1
Goff, S.2
-
19
-
-
69849093394
-
Properties of untranslated regions of the S. cerevisiae genome
-
Tuller T, Ruppin E, Kupiec M, (2009) Properties of untranslated regions of the S. cerevisiae genome. BMC Genomics 10: 391.
-
(2009)
BMC Genomics
, vol.10
, pp. 391
-
-
Tuller, T.1
Ruppin, E.2
Kupiec, M.3
-
20
-
-
66249097064
-
Long 3′-UTRs target wild-type mRNAs for nonsense-mediated mRNA decay in Saccharomyces cerevisiae
-
Kebaara B, Atkin A, (2009) Long 3′-UTRs target wild-type mRNAs for nonsense-mediated mRNA decay in Saccharomyces cerevisiae. Nucelic Acids Res 37: 2771-2778.
-
(2009)
Nucelic Acids Res
, vol.37
, pp. 2771-2778
-
-
Kebaara, B.1
Atkin, A.2
-
21
-
-
33947609704
-
A conserved role for cytoplasmic poly(A)-binding protein 1 (PABPC1) in nonsense-mediated mRNA decay
-
Behm-Ansmant I, Gatfield D, Rehwinkel J, Hilgers V, Izaurralde E, (2007) A conserved role for cytoplasmic poly(A)-binding protein 1 (PABPC1) in nonsense-mediated mRNA decay. EMBO J 26: 1591-1601.
-
(2007)
EMBO J
, vol.26
, pp. 1591-1601
-
-
Behm-Ansmant, I.1
Gatfield, D.2
Rehwinkel, J.3
Hilgers, V.4
Izaurralde, E.5
-
22
-
-
67651233776
-
Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila
-
Hansen K, Lareau L, Blanchette M, Green R, Meng Q, et al. (2009) Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila. PLoS Genet 5: e1000525.
-
(2009)
PLoS Genet
, vol.5
-
-
Hansen, K.1
Lareau, L.2
Blanchette, M.3
Green, R.4
Meng, Q.5
-
23
-
-
33845622065
-
Both introns and long 3′-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants
-
Kertész S, Kerényi Z, Mérai Z, Bartos I, Pálfy T, et al. (2006) Both introns and long 3′-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants. Nucleic Acids Res 34: 6147-6157.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 6147-6157
-
-
Kertész, S.1
Kerényi, Z.2
Mérai, Z.3
Bartos, I.4
Pálfy, T.5
-
24
-
-
40449131535
-
Proximity of the poly(A)-binding protein to a premature termination codon inhibits mammalian nonsense-mediated mRNA decay
-
Silva A, Ribeiro P, Inácio A, Liebhaber S, Romão L, (2008) Proximity of the poly(A)-binding protein to a premature termination codon inhibits mammalian nonsense-mediated mRNA decay. RNA 14: 563-576.
-
(2008)
RNA
, vol.14
, pp. 563-576
-
-
Silva, A.1
Ribeiro, P.2
Inácio, A.3
Liebhaber, S.4
Romão, L.5
-
25
-
-
8544253956
-
A faux 3′-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay
-
Amrani N, Ganesan R, Kervestin S, Mangus DA, Ghosh S, et al. (2004) A faux 3′-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay. Nature 432: 112-118.
-
(2004)
Nature
, vol.432
, pp. 112-118
-
-
Amrani, N.1
Ganesan, R.2
Kervestin, S.3
Mangus, D.A.4
Ghosh, S.5
-
26
-
-
0029790557
-
Identification and characterization of mutations in the UPF1 gene that affect nonsense suppression and the formation of the Upf protein complex but not mRNA turnover
-
Weng Y, Czaplinski K, Peltz S, (1996) Identification and characterization of mutations in the UPF1 gene that affect nonsense suppression and the formation of the Upf protein complex but not mRNA turnover. Mol Cell Biol 16: 5491-5506.
-
(1996)
Mol Cell Biol
, vol.16
, pp. 5491-5506
-
-
Weng, Y.1
Czaplinski, K.2
Peltz, S.3
-
27
-
-
77951976646
-
Splicing-dependent NMD does not require the EJC in Schizosaccharomyces pombe
-
Wen J, Brogna S, (2010) Splicing-dependent NMD does not require the EJC in Schizosaccharomyces pombe. EMBO J 29: 1537-1551.
-
(2010)
EMBO J
, vol.29
, pp. 1537-1551
-
-
Wen, J.1
Brogna, S.2
-
28
-
-
76349096255
-
High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans
-
Ramani A, Nelson A, Kapranov P, Bell I, Gingeras T, et al. (2009) High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans. Genome Biol 10: R101.
-
(2009)
Genome Biol
, vol.10
-
-
Ramani, A.1
Nelson, A.2
Kapranov, P.3
Bell, I.4
Gingeras, T.5
-
29
-
-
70350216071
-
Plant upstream ORFs can trigger nonsense-mediated mRNA decay in a size-dependent manner
-
Nyikó T, Sonkoly B, Mérai Z, Benkovics A, Silhavy D, (2009) Plant upstream ORFs can trigger nonsense-mediated mRNA decay in a size-dependent manner. Plant Mol Biol 71: 367-378.
-
(2009)
Plant Mol Biol
, vol.71
, pp. 367-378
-
-
Nyikó, T.1
Sonkoly, B.2
Mérai, Z.3
Benkovics, A.4
Silhavy, D.5
-
30
-
-
71649110895
-
The upstream open reading frame of the Arabidopsis AtMHX gene has a strong impact on transcript accumulation through the nonsense-mediated mRNA decay pathway
-
Saul H, Elharrar E, Gaash R, Eliaz D, Valenci M, et al. (2009) The upstream open reading frame of the Arabidopsis AtMHX gene has a strong impact on transcript accumulation through the nonsense-mediated mRNA decay pathway. Plant J 60: 1031-1042.
-
(2009)
Plant J
, vol.60
, pp. 1031-1042
-
-
Saul, H.1
Elharrar, E.2
Gaash, R.3
Eliaz, D.4
Valenci, M.5
-
31
-
-
6944256813
-
Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise
-
Mendell J, Sharifi N, Meyers J, Martinez-Murillo F, Dietz H, (2004) Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise. Nat Genet 36: 1073-1078.
-
(2004)
Nat Genet
, vol.36
, pp. 1073-1078
-
-
Mendell, J.1
Sharifi, N.2
Meyers, J.3
Martinez-Murillo, F.4
Dietz, H.5
-
32
-
-
48349096177
-
Widespread impact of nonsense-mediated mRNA decay on the yeast intronome
-
Sayani S, Janis M, Lee C, Toesca I, Chanfreau G, (2008) Widespread impact of nonsense-mediated mRNA decay on the yeast intronome. Mol Cell 31: 360-370.
-
(2008)
Mol Cell
, vol.31
, pp. 360-370
-
-
Sayani, S.1
Janis, M.2
Lee, C.3
Toesca, I.4
Chanfreau, G.5
-
33
-
-
73249128861
-
Nonsense-mediated mRNA decay mutes the splicing defects of spliceosome component mutations
-
Kawashima T, Pellegrini M, Chanfreau G, (2009) Nonsense-mediated mRNA decay mutes the splicing defects of spliceosome component mutations. RNA 15: 2236-2247.
-
(2009)
RNA
, vol.15
, pp. 2236-2247
-
-
Kawashima, T.1
Pellegrini, M.2
Chanfreau, G.3
-
34
-
-
60549106018
-
Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis
-
Kurihara Y, Matsui A, Hanada K, Kawashima M, Ishida J, et al. (2009) Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis. Proc Natl Acad Sci U S A 106: 2453-2458.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 2453-2458
-
-
Kurihara, Y.1
Matsui, A.2
Hanada, K.3
Kawashima, M.4
Ishida, J.5
-
35
-
-
0347416978
-
Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5′ to 3′ mRNA decay pathways in yeast
-
He F, Li X, Spatrick P, Casillo R, Dong S, et al. (2003) Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5′ to 3′ mRNA decay pathways in yeast. Mol Cell 12: 1439-1452.
-
(2003)
Mol Cell
, vol.12
, pp. 1439-1452
-
-
He, F.1
Li, X.2
Spatrick, P.3
Casillo, R.4
Dong, S.5
-
36
-
-
33751375141
-
Impact of nonsense-mediated mRNA decay on the global expression profile of budding yeast
-
Guan Q, Zheng W, Tang S, Liu X, Zinkel R, et al. (2006) Impact of nonsense-mediated mRNA decay on the global expression profile of budding yeast. PLoS Genet 2: e203.
-
(2006)
PLoS Genet
, vol.2
-
-
Guan, Q.1
Zheng, W.2
Tang, S.3
Liu, X.4
Zinkel, R.5
-
37
-
-
0003245690
-
mRNAs encoding telomerase components and regulators are controlled by UPF genes in Saccharomyces cerevisiae
-
Dahlseid J, Lew-Smith J, Lelivelt M, Enomoto S, Ford A, et al. (2003) mRNAs encoding telomerase components and regulators are controlled by UPF genes in Saccharomyces cerevisiae. Eukaryotic Cell 2: 134-142.
-
(2003)
Eukaryotic Cell
, vol.2
, pp. 134-142
-
-
Dahlseid, J.1
Lew-Smith, J.2
Lelivelt, M.3
Enomoto, S.4
Ford, A.5
-
38
-
-
38049103286
-
Association of yeast Upf1p with direct substrates of the NMD pathway
-
Johansson M, He F, Spatrick P, Li C, Jacobson A, (2007) Association of yeast Upf1p with direct substrates of the NMD pathway. Proc Natl Acad Sci U S A 104: 20872.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 20872
-
-
Johansson, M.1
He, F.2
Spatrick, P.3
Li, C.4
Jacobson, A.5
-
39
-
-
25844435702
-
Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets
-
Rehwinkel J, Letunic I, Raes J, Bork P, Izaurralde E, (2005) Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets. Rna 11: 1530-1544.
-
(2005)
Rna
, vol.11
, pp. 1530-1544
-
-
Rehwinkel, J.1
Letunic, I.2
Raes, J.3
Bork, P.4
Izaurralde, E.5
-
40
-
-
33745099773
-
Arabidopsis UPF1 RNA Helicase for Nonsense-Mediated mRNA Decay Is Involved in Seed Size Control and Is Essential for Growth
-
Yoine M, Nishii T, Nakamura K, (2006) Arabidopsis UPF1 RNA Helicase for Nonsense-Mediated mRNA Decay Is Involved in Seed Size Control and Is Essential for Growth. Plant Cell Physiol.
-
(2006)
Plant Cell Physiol
-
-
Yoine, M.1
Nishii, T.2
Nakamura, K.3
-
41
-
-
0035862813
-
Rent1, a trans-effector of nonsense-mediated mRNA decay, is essential for mammalian embryonic viability
-
Medghalchi S, Frischmeyer P, Mendell J, Kelly A, Lawler A, et al. (2001) Rent1, a trans-effector of nonsense-mediated mRNA decay, is essential for mammalian embryonic viability. Hum Mol Genet 10: 99-105.
-
(2001)
Hum Mol Genet
, vol.10
, pp. 99-105
-
-
Medghalchi, S.1
Frischmeyer, P.2
Mendell, J.3
Kelly, A.4
Lawler, A.5
-
42
-
-
33846015866
-
Functions of the nonsense-mediated mRNA decay pathway in Drosophila development
-
Metzstein M, Krasnow M, (2006) Functions of the nonsense-mediated mRNA decay pathway in Drosophila development. PLoS Genet 2: e180.
-
(2006)
PLoS Genet
, vol.2
-
-
Metzstein, M.1
Krasnow, M.2
-
43
-
-
56349101286
-
UPF1, a conserved nonsense-mediated mRNA decay factor, regulates cyst wall protein transcripts in Giardia lamblia
-
Chen Y-H, Su L-H, Huang Y-C, Wang Y-T, Kao Y-Y, et al. (2009) UPF1, a conserved nonsense-mediated mRNA decay factor, regulates cyst wall protein transcripts in Giardia lamblia. PLOS one 3: e3609.
-
(2009)
PLOS One
, vol.3
-
-
Chen, Y.-H.1
Su, L.-H.2
Huang, Y.-C.3
Wang, Y.-T.4
Kao, Y.-Y.5
-
44
-
-
0033983712
-
A new twist in trypanosome RNA metabolism: cis-splicing of pre-mRNA
-
Mair G, Shi H, Li H, Djikeng A, Aviles HO, et al. (2000) A new twist in trypanosome RNA metabolism: cis-splicing of pre-mRNA. RNA 6: 163-169.
-
(2000)
RNA
, vol.6
, pp. 163-169
-
-
Mair, G.1
Shi, H.2
Li, H.3
Djikeng, A.4
Aviles, H.O.5
-
45
-
-
49249093497
-
The RNA-binding protein TbDRBD3 regulates the stability of a specific subset of mRNAs in trypanosomes
-
Estévez A, (2008) The RNA-binding protein TbDRBD3 regulates the stability of a specific subset of mRNAs in trypanosomes. Nucleic Acids Res 36: 4573-4586.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 4573-4586
-
-
Estévez, A.1
-
46
-
-
70049084728
-
Trypanosoma brucei PUF9 regulates mRNAs for proteins involved in replicative processes over the cell cycle
-
Archer SK, van Luu D, de Queiroz R, Brems S, Clayton CE, (2009) Trypanosoma brucei PUF9 regulates mRNAs for proteins involved in replicative processes over the cell cycle. PLoS Pathog 5: e1000565.
-
(2009)
PLoS Pathog
, vol.5
-
-
Archer, S.K.1
van Luu, D.2
de Queiroz, R.3
Brems, S.4
Clayton, C.E.5
-
47
-
-
62549158711
-
Multiple roles for polypyrimidine tract binding (PTB) proteins in trypanosome RNA metabolism
-
Stern M, Gupta S, Salmon-Divon M, Haham T, Barda O, et al. (2009) Multiple roles for polypyrimidine tract binding (PTB) proteins in trypanosome RNA metabolism. RNA 15: 648-665.
-
(2009)
RNA
, vol.15
, pp. 648-665
-
-
Stern, M.1
Gupta, S.2
Salmon-Divon, M.3
Haham, T.4
Barda, O.5
-
48
-
-
35349012982
-
Post-transcriptional regulation of gene expression in trypanosomes and leishmanias
-
Clayton C, Shapira M, (2007) Post-transcriptional regulation of gene expression in trypanosomes and leishmanias. Mol Biochem Parasitol 156: 93-101.
-
(2007)
Mol Biochem Parasitol
, vol.156
, pp. 93-101
-
-
Clayton, C.1
Shapira, M.2
-
49
-
-
45249090233
-
A role for Caf1 in mRNA deadenylation and decay in trypanosomes and human cells
-
Schwede A, Ellis L, Luther J, Carrington M, Stoecklin G, et al. (2008) A role for Caf1 in mRNA deadenylation and decay in trypanosomes and human cells. Nucleic Acids Res 36: 3374-3388.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 3374-3388
-
-
Schwede, A.1
Ellis, L.2
Luther, J.3
Carrington, M.4
Stoecklin, G.5
-
50
-
-
55049098755
-
Stress granules and the heat shock response in Trypanosoma brucei
-
Kramer S, Queiroz R, Ellis L, Webb H, Hoheisel J, et al. (2008) Stress granules and the heat shock response in Trypanosoma brucei. J Cell Sci 121: 3002-3014.
-
(2008)
J Cell Sci
, vol.121
, pp. 3002-3014
-
-
Kramer, S.1
Queiroz, R.2
Ellis, L.3
Webb, H.4
Hoheisel, J.5
-
51
-
-
70449723338
-
The role of deadenylation in the degradation of unstable mRNAs in trypanosomes
-
Schwede A, Manful T, Jha B, Helbig C, Bercovich N, et al. (2009) The role of deadenylation in the degradation of unstable mRNAs in trypanosomes. Nucleic Acids Res 37: 5511-5528.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 5511-5528
-
-
Schwede, A.1
Manful, T.2
Jha, B.3
Helbig, C.4
Bercovich, N.5
-
52
-
-
0033928734
-
Genetic interference in Trypanosoma brucei by heritable and inducible double-stranded RNA
-
Shi H, Djikeng A, Mark T, Wirtz E, Tschudi C, et al. (2000) Genetic interference in Trypanosoma brucei by heritable and inducible double-stranded RNA. RNA 6: 1069-1076.
-
(2000)
RNA
, vol.6
, pp. 1069-1076
-
-
Shi, H.1
Djikeng, A.2
Mark, T.3
Wirtz, E.4
Tschudi, C.5
-
53
-
-
79955602637
-
High throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome
-
in press
-
Alsford S, Turner D, Obado S, Sanchez-Flores A, Glover L, et al. (2011) High throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome. Genome Resin press.
-
(2011)
Genome Res
-
-
Alsford, S.1
Turner, D.2
Obado, S.3
Sanchez-Flores, A.4
Glover, L.5
-
54
-
-
0026773782
-
Gene products that promote mRNA turnover in Saccharomyces cerevisiae
-
Leeds P, Wood J, Lee B, Culbertson M, (1992) Gene products that promote mRNA turnover in Saccharomyces cerevisiae. Mol Cell Biol 12: 2165-2177.
-
(1992)
Mol Cell Biol
, vol.12
, pp. 2165-2177
-
-
Leeds, P.1
Wood, J.2
Lee, B.3
Culbertson, M.4
-
55
-
-
68249138707
-
Unusual bipartite mode of interaction between the nonsense-mediated decay factors, UPF1 and UPF2
-
Clerici M, Mourão A, Gutsche I, Gehring N, Hentze M, et al. (2009) Unusual bipartite mode of interaction between the nonsense-mediated decay factors, UPF1 and UPF2. EMBO J 28: 2293-2306.
-
(2009)
EMBO J
, vol.28
, pp. 2293-2306
-
-
Clerici, M.1
Mourão, A.2
Gutsche, I.3
Gehring, N.4
Hentze, M.5
-
56
-
-
0030763149
-
The GPI-phospholipase C of Trypanosoma brucei is nonessential but influences parasitemia in mice
-
Webb H, Carnall N, Vanhamme L, Rolin S, Van Den Abbeele J, et al. (1997) The GPI-phospholipase C of Trypanosoma brucei is nonessential but influences parasitemia in mice. J Cell Biol 139: 103-114.
-
(1997)
J Cell Biol
, vol.139
, pp. 103-114
-
-
Webb, H.1
Carnall, N.2
Vanhamme, L.3
Rolin, S.4
van Den Abbeele, J.5
-
57
-
-
14844341387
-
Developmentally regulated instability of the GPI-PLC mRNA is dependent on a short-lived protein factor
-
Webb H, Burns R, Ellis L, Kimblin N, Carrington M, (2005) Developmentally regulated instability of the GPI-PLC mRNA is dependent on a short-lived protein factor. Nucleic Acids Res 33: 1503-1512.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1503-1512
-
-
Webb, H.1
Burns, R.2
Ellis, L.3
Kimblin, N.4
Carrington, M.5
-
58
-
-
77953025913
-
Processing of a reporter mRNA in trypanosomes is not coupled to transcription by RNA polymerase II
-
Stewart M, Haile S, Jha B, Cristodero M, Li C-H, et al. (2010) Processing of a reporter mRNA in trypanosomes is not coupled to transcription by RNA polymerase II. Mol Biochem Parasitol 172: 99-106.
-
(2010)
Mol Biochem Parasitol
, vol.172
, pp. 99-106
-
-
Stewart, M.1
Haile, S.2
Jha, B.3
Cristodero, M.4
Li, C.-H.5
-
59
-
-
33845972279
-
Regulated expression of glycosomal phosphoglycerate kinase in Trypanosoma brucei
-
Colasante C, Robles A, Li C-H, Schwede A, Benz C, et al. (2007) Regulated expression of glycosomal phosphoglycerate kinase in Trypanosoma brucei. Mol Biochem Parasitol 151: 193-204.
-
(2007)
Mol Biochem Parasitol
, vol.151
, pp. 193-204
-
-
Colasante, C.1
Robles, A.2
Li, C.-H.3
Schwede, A.4
Benz, C.5
-
60
-
-
0030859962
-
Mechanisms of developmental regulation in Trypanosoma brucei: A polypyrimidine tract in the 3′-untranslated region of a trypanosome surface protein mRNA affects RNA abundance and translation
-
Hotz H-R, Hartmann C, Huober K, Hug M, Clayton CE, (1997) Mechanisms of developmental regulation in Trypanosoma brucei: A polypyrimidine tract in the 3′-untranslated region of a trypanosome surface protein mRNA affects RNA abundance and translation. Nucleic Acids Res 25: 3017-3025.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3017-3025
-
-
Hotz, H.-R.1
Hartmann, C.2
Huober, K.3
Hug, M.4
Clayton, C.E.5
-
61
-
-
66049162655
-
Execution of nonsense-mediated mRNA decay: what defines a substrate?
-
Rebbapragada I, Lykke-Andersen J, (2009) Execution of nonsense-mediated mRNA decay: what defines a substrate? Curr Opin Cell Biol 21: 394-402.
-
(2009)
Curr Opin Cell Biol
, vol.21
, pp. 394-402
-
-
Rebbapragada, I.1
Lykke-Andersen, J.2
-
62
-
-
77958607457
-
Tethering of poly(A) binding protein interferes with non-translated mRNA decay from 5′ end in yeast
-
in press
-
Tsuboi T, Inada T, (2010) Tethering of poly(A) binding protein interferes with non-translated mRNA decay from 5′ end in yeast. J Biol Chemin press.
-
(2010)
J Biol Chem
-
-
Tsuboi, T.1
Inada, T.2
-
63
-
-
0037373749
-
Cycloheximide-mediated accumulation of transcripts from a procyclin expression site depends on the intergenic region
-
Fluck C, Salomone J, Kurath U, Roditi I, (2003) Cycloheximide-mediated accumulation of transcripts from a procyclin expression site depends on the intergenic region. Mol Biochem Parasitol 127: 93-97.
-
(2003)
Mol Biochem Parasitol
, vol.127
, pp. 93-97
-
-
Fluck, C.1
Salomone, J.2
Kurath, U.3
Roditi, I.4
-
64
-
-
0042025014
-
Nonsense-mediated mRNA decay in Drosophila: at the intersection of the yeast and mammalian pathways
-
Gatfield D, Unterholzner L, Ciccarelli F, Bork P, Izaurralde E, (2003) Nonsense-mediated mRNA decay in Drosophila: at the intersection of the yeast and mammalian pathways. EMBO J 22: 3960-3970.
-
(2003)
EMBO J
, vol.22
, pp. 3960-3970
-
-
Gatfield, D.1
Unterholzner, L.2
Ciccarelli, F.3
Bork, P.4
Izaurralde, E.5
-
65
-
-
0141819096
-
Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities
-
Lejeune F, Li X, Maquat LE, (2003) Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities. Mol Cell 12: 675-687.
-
(2003)
Mol Cell
, vol.12
, pp. 675-687
-
-
Lejeune, F.1
Li, X.2
Maquat, L.E.3
-
66
-
-
67349110426
-
Identification of core components of the exon junction complex in trypanosomes
-
Bercovich N, Clayton C, Levin M, Vazquez M, (2009) Identification of core components of the exon junction complex in trypanosomes. Mol Biochem Parasitol 166: 190-193.
-
(2009)
Mol Biochem Parasitol
, vol.166
, pp. 190-193
-
-
Bercovich, N.1
Clayton, C.2
Levin, M.3
Vazquez, M.4
-
67
-
-
79956322553
-
Global quantification of mammalian gene expression control
-
Schwanhäusser B, Busse D, Li N, Dittmar G, Schuchhardt J, et al. (2011) Global quantification of mammalian gene expression control. Nature 473: 337-342.
-
(2011)
Nature
, vol.473
, pp. 337-342
-
-
Schwanhäusser, B.1
Busse, D.2
Li, N.3
Dittmar, G.4
Schuchhardt, J.5
-
68
-
-
77956127684
-
Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites
-
Siegel T, Hekstra D, Wang X, Dewell S, Cross G, (2010) Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites. Nucleic Acids Res 38: 4946-4957.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 4946-4957
-
-
Siegel, T.1
Hekstra, D.2
Wang, X.3
Dewell, S.4
Cross, G.5
-
69
-
-
77957805872
-
Functional characterization of three leishmania poly(A) binding protein homologues with distinct binding properties to RNA and protein partners
-
da Costa Lima T, Moura D, Reis C, Vasconcelos J, Ellis L, et al. (2010) Functional characterization of three leishmania poly(A) binding protein homologues with distinct binding properties to RNA and protein partners. Eukaryot Cell 9: 1484-1494.
-
(2010)
Eukaryot Cell
, vol.9
, pp. 1484-1494
-
-
da Costa Lima, T.1
Moura, D.2
Reis, C.3
Vasconcelos, J.4
Ellis, L.5
-
70
-
-
0034282752
-
Multiple portions of poly(A)-binding protein stimulate translation in vivo
-
Gray N, Coller J, Dickson K, Wickens M, (2000) Multiple portions of poly(A)-binding protein stimulate translation in vivo. EMBO J 19: 4723-4733.
-
(2000)
EMBO J
, vol.19
, pp. 4723-4733
-
-
Gray, N.1
Coller, J.2
Dickson, K.3
Wickens, M.4
-
71
-
-
0346363759
-
Argonaute protein in the early divergent eukaryote Trypanosoma brucei: control of small interfering RNA accumulation and retroposon transcript abundance
-
Shi H, Djikeng A, Tschudi C, Ullu E, (2004) Argonaute protein in the early divergent eukaryote Trypanosoma brucei: control of small interfering RNA accumulation and retroposon transcript abundance. Mol Cell Biol 24: 420-427.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 420-427
-
-
Shi, H.1
Djikeng, A.2
Tschudi, C.3
Ullu, E.4
-
72
-
-
37349051368
-
Genomic rearrangements and transcriptional analysis of the spliced leader-associated retrotransposon in RNA interference-deficient Trypanosoma brucei
-
Patrick K, Luz P, Ruan J, Shi H, Ullu E, et al. (2008) Genomic rearrangements and transcriptional analysis of the spliced leader-associated retrotransposon in RNA interference-deficient Trypanosoma brucei. Mol Microbiol 67: 435-447.
-
(2008)
Mol Microbiol
, vol.67
, pp. 435-447
-
-
Patrick, K.1
Luz, P.2
Ruan, J.3
Shi, H.4
Ullu, E.5
-
73
-
-
76349083121
-
Nonsense-mediated mRNA decapping occurs on polyribosomes in Saccharomyces cerevisiae
-
Hu W, Petzold C, Coller J, Baker K, (2010) Nonsense-mediated mRNA decapping occurs on polyribosomes in Saccharomyces cerevisiae. Nat Struct Mol Biol 17: 244-247.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 244-247
-
-
Hu, W.1
Petzold, C.2
Coller, J.3
Baker, K.4
-
74
-
-
11144327213
-
A doubly inducible system for RNA interference and rapid RNAi plasmid construction in Trypanosoma brucei
-
Alibu VP, Storm L, Haile S, Clayton C, Horn D, (2004) A doubly inducible system for RNA interference and rapid RNAi plasmid construction in Trypanosoma brucei. Mol Biochem Parasitol 139: 75-82.
-
(2004)
Mol Biochem Parasitol
, vol.139
, pp. 75-82
-
-
Alibu, V.P.1
Storm, L.2
Haile, S.3
Clayton, C.4
Horn, D.5
-
75
-
-
36348946393
-
Down-regulating gene expression by RNA interference in Trypanosoma brucei
-
In: Carmichael G, editors, Humana Press
-
Clayton CE, Estévez AM, Hartmann C, Alibu VP, Field M, et al. (2005) Down-regulating gene expression by RNA interference in Trypanosoma brucei. In: Carmichael G, editors. RNA interference: Humana Press.
-
(2005)
RNA Interference:
-
-
Clayton, C.E.1
Estévez, A.M.2
Hartmann, C.3
Alibu, V.P.4
Field, M.5
-
76
-
-
33845261565
-
Roles of a Trypanosoma brucei 5′→3′ exoribonuclease homologue in mRNA degradation
-
Li C-H, Irmer H, Gudjonsdottir-Planck D, Freese S, Salm H, et al. (2006) Roles of a Trypanosoma brucei 5′→3′ exoribonuclease homologue in mRNA degradation. RNA 12: 2171-2186.
-
(2006)
RNA
, vol.12
, pp. 2171-2186
-
-
Li, C.-H.1
Irmer, H.2
Gudjonsdottir-Planck, D.3
Freese, S.4
Salm, H.5
-
77
-
-
70549084861
-
Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons
-
Queiroz R, Benz C, Fellenberg K, V S, Hoheisel J, et al. (2009) Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons. BMC Genomics 10: 495.
-
(2009)
BMC Genomics
, vol.10
, pp. 495
-
-
Queiroz, R.1
Benz, C.2
Fellenberg, K.3
Hoheisel, J.4
-
78
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Rozen S, Skaletsky H, (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132: 365-386.
-
(2000)
Methods Mol Biol
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
79
-
-
70049114411
-
The phosphoproteome of bloodstream form Trypanonosoma brucei, causative agent of African sleeping sickness
-
Nett I, Martin D, Miranda-Saavedra D, Lamont D, Barber J, et al. (2009) The phosphoproteome of bloodstream form Trypanonosoma brucei, causative agent of African sleeping sickness. Mol Cell Proteomics 8: 1527-1538.
-
(2009)
Mol Cell Proteomics
, vol.8
, pp. 1527-1538
-
-
Nett, I.1
Martin, D.2
Miranda-Saavedra, D.3
Lamont, D.4
Barber, J.5
|