-
1
-
-
67650996280
-
Epithelial-mesenchymal transitions: The importance of changing cell state in development and disease
-
Acloque H, Adams MS, Fishwick K, Bronner-Fraser M, Nieto MA. 2009. Epithelial-mesenchymal transitions: the importance of changing cell state in development and disease. J Clin Invest 119: 1438-1449.
-
(2009)
J Clin Invest
, vol.119
, pp. 1438-1449
-
-
Acloque, H.1
Adams, M.S.2
Fishwick, K.3
Bronner-Fraser, M.4
Nieto, M.A.5
-
2
-
-
84957543163
-
Hepatitis B virus X protein induces epithelial-mesenchymal transition by repressing E-cadherin expression via upregulation of E12/E47
-
Ahn H-J, Lib Jang K, Yeom S, Kwak J, Shin Kim S. 2016. Hepatitis B virus X protein induces epithelial-mesenchymal transition by repressing E-cadherin expression via upregulation of E12/E47. J Gen Virol 97: 134-143.
-
(2016)
J Gen Virol
, vol.97
, pp. 134-143
-
-
Ahn, H.-J.1
Lib Jang, K.2
Yeom, S.3
Kwak, J.4
Shin Kim, S.5
-
3
-
-
70350462285
-
Distinct roles for E12 and E47 in B cell specification and the sequential rearrangement of immunoglobulin light chain loci
-
Beck K, Peak MM, Ota T, Nemazee D, Murre C. 2009. Distinct roles for E12 and E47 in B cell specification and the sequential rearrangement of immunoglobulin light chain loci. J Exp Med 206: 2271-2284.
-
(2009)
J Exp Med
, vol.206
, pp. 2271-2284
-
-
Beck, K.1
Peak, M.M.2
Ota, T.3
Nemazee, D.4
Murre, C.5
-
4
-
-
0026328043
-
The E-cadherin promoter: Functional analysis of a G.C-rich region and an epithelial cell-specific palindromic regulatory element
-
Behrens J, Löwrick O, Klein-Hitpass L, Birchmeier W. 1991. The E-cadherin promoter: functional analysis of a G.C-rich region and an epithelial cell-specific palindromic regulatory element. Proc Natl Acad Sci 88: 11495-11499.
-
(1991)
Proc Natl Acad Sci
, vol.88
, pp. 11495-11499
-
-
Behrens, J.1
Löwrick, O.2
Klein-Hitpass, L.3
Birchmeier, W.4
-
5
-
-
16844364151
-
LIF/STAT3 controls ES cell self-renewal and pluripotency by a Myc-dependent mechanism
-
Cartwright P, McLean C, Sheppard A, Rivett D, Jones K, Dalton S. 2005. LIF/STAT3 controls ES cell self-renewal and pluripotency by a Myc-dependent mechanism. Development 132: 885-896.
-
(2005)
Development
, vol.132
, pp. 885-896
-
-
Cartwright, P.1
McLean, C.2
Sheppard, A.3
Rivett, D.4
Jones, K.5
Dalton, S.6
-
6
-
-
62149125434
-
Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling
-
Chambers SM, Fasano CA, Papapetrou EP, Tomishima M, Sade-lain M, Studer L. 2009. Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling. Nat Biotechnol 27: 275-280.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 275-280
-
-
Chambers, S.M.1
Fasano, C.A.2
Papapetrou, E.P.3
Tomishima, M.4
Sade-Lain, M.5
Studer, L.6
-
7
-
-
78149465975
-
A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity
-
Chia N-Y, Chan Y-S, Feng B, Lu X, Orlov YL, Moreau D, Kumar P, Yang L, Jiang J, Lau M-S, et al. 2010. A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity. Nature 468: 316-320.
-
(2010)
Nature
, vol.468
, pp. 316-320
-
-
Chia, N.-Y.1
Chan, Y.-S.2
Feng, B.3
Lu, X.4
Orlov, Y.L.5
Moreau, D.6
Kumar, P.7
Yang, L.8
Jiang, J.9
Lau, M.-S.10
-
8
-
-
0032953308
-
HnRNP H is a component of a splicing enhancer complex that activates a c-src alternative exon in neuronal cells
-
Chou M-Y, Rooke N, Turck CW, Black DL. 1999. hnRNP H is a component of a splicing enhancer complex that activates a c-src alternative exon in neuronal cells. Mol Cell Biol 19: 69-77.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 69-77
-
-
Chou, M.-Y.1
Rooke, N.2
Turck, C.W.3
Black, D.L.4
-
9
-
-
41149174852
-
Tcf3 is an integral component of the core regulatory circuitry of embryonic stem cells
-
Cole MF, Johnstone SE, Newman JJ, Kagey MH, Young RA. 2008. Tcf3 is an integral component of the core regulatory circuitry of embryonic stem cells. Genes Dev 22: 746-755.
-
(2008)
Genes Dev
, vol.22
, pp. 746-755
-
-
Cole, M.F.1
Johnstone, S.E.2
Newman, J.J.3
Kagey, M.H.4
Young, R.A.5
-
10
-
-
84990032164
-
The C9ORF72 GGGGCC expansion forms RNA G-quadruplex inclusions and sequesters hnRNP H to disrupt splicing in ALS brains
-
Conlon EG, Lu L, Sharma A, Yamazaki T, Tang T, Shneider NA, Manley JL. 2016. The C9ORF72 GGGGCC expansion forms RNA G-quadruplex inclusions and sequesters hnRNP H to disrupt splicing in ALS brains. Elife 5: e17820.
-
(2016)
Elife
, vol.5
-
-
Conlon, E.G.1
Lu, L.2
Sharma, A.3
Yamazaki, T.4
Tang, T.5
Shneider, N.A.6
Manley, J.L.7
-
11
-
-
85027567189
-
Id genes are essential for early heart formation
-
Cunningham TJ, Yu MS, McKeithan WL, Spiering S, Carrette F, Huang C-T, Bushway PJ, Tierney M, Albini S, Giacca M, et al. 2017. Id genes are essential for early heart formation. Genes Dev 31: 1325-1338.
-
(2017)
Genes Dev
, vol.31
, pp. 1325-1338
-
-
Cunningham, T.J.1
Yu, M.S.2
McKeithan, W.L.3
Spiering, S.4
Carrette, F.5
Huang, C.-T.6
Bushway, P.J.7
Tierney, M.8
Albini, S.9
Giacca, M.10
-
12
-
-
37049007672
-
Epithelial-mesenchymal transition events during human embryonic stem cell differentiation
-
Eastham AM, Spencer H, Soncin F, Ritson S, Merry CLR, Stern PL, Ward CM. 2007. Epithelial-mesenchymal transition events during human embryonic stem cell differentiation. Cancer Res 67: 11254-11262.
-
(2007)
Cancer Res
, vol.67
, pp. 11254-11262
-
-
Eastham, A.M.1
Spencer, H.2
Soncin, F.3
Ritson, S.4
Merry, C.L.R.5
Stern, P.L.6
Ward, C.M.7
-
13
-
-
80052223272
-
An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming
-
Gabut M, Samavarchi-Tehrani P, Wang X, Slobodeniuc V, O’Han-lon D, Sung H-K, Alvarez M, Talukder S, Pan Q, Mazzoni EO, et al. 2011. An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming. Cell 147: 132-146.
-
(2011)
Cell
, vol.147
, pp. 132-146
-
-
Gabut, M.1
Samavarchi-Tehrani, P.2
Wang, X.3
Slobodeniuc, V.4
O’han-Lon, D.5
Sung, H.-K.6
Alvarez, M.7
Talukder, S.8
Pan, Q.9
Mazzoni, E.O.10
-
14
-
-
79958848219
-
A DNMT3B alternatively spliced exon and encoded peptide are novel biomarkers of human pluripotent stem cells
-
Gopalakrishna-Pillai S, Iverson LE. 2011. A DNMT3B alternatively spliced exon and encoded peptide are novel biomarkers of human pluripotent stem cells. PLoS ONE 6: e20663.
-
(2011)
Plos ONE
, vol.6
-
-
Gopalakrishna-Pillai, S.1
Iverson, L.E.2
-
15
-
-
84963973883
-
Alternative splicing of neuronal differentiation factor TRF2 regulated by HNRNPH1/H2
-
Grammatikakis I, Zhang P, Panda AC, Kim J, Maudsley S, Abdel-mohsen K, Yang X, Martindale JL, Motiño O, Hutchison ER, et al. 2016. Alternative splicing of neuronal differentiation factor TRF2 regulated by HNRNPH1/H2. Cell Rep 15: 926-934.
-
(2016)
Cell Rep
, vol.15
, pp. 926-934
-
-
Grammatikakis, I.1
Zhang, P.2
Panda, A.C.3
Kim, J.4
Maudsley, S.5
Abdel-Mohsen, K.6
Yang, X.7
Martindale, J.L.8
Motiño, O.9
Hutchison, E.R.10
-
16
-
-
21844480060
-
A combinatorial code for splicing silencing: UAGG and GGGG motifs
-
Han K, Yeo G, An P, Burge CB, Grabowski PJ. 2005. A combinatorial code for splicing silencing: UAGG and GGGG motifs. PLoS Biol 3: e158.
-
(2005)
Plos Biol
, vol.3
-
-
Han, K.1
Yeo, G.2
An, P.3
Burge, C.B.4
Grabowski, P.J.5
-
17
-
-
84878995293
-
MBNL proteins repress ES-cell-specific alternative splicing and reprogramming
-
Han H, Irimia M, Ross PJ, Sung H-K, Alipanahi B, David L, Goli-pour A, Gabut M, Michael IP, Nachman EN, et al. 2013. MBNL proteins repress ES-cell-specific alternative splicing and reprogramming. Nature 498: 241-245.
-
(2013)
Nature
, vol.498
, pp. 241-245
-
-
Han, H.1
Irimia, M.2
Ross, P.J.3
Sung, H.-K.4
Alipanahi, B.5
David, L.6
Goli-Pour, A.7
Gabut, M.8
Michael, I.P.9
Nachman, E.N.10
-
18
-
-
84928543691
-
A regulatory network involving β-Catenin, e-Cadherin, PI3k/Akt, and Slug balances self-renewal and differentiation of human pluripotent stem cells in response to Wnt signaling
-
Huang T-S, Li L, Moalim-Nour L, Jia D, Bai J, Yao Z, Bennett SAL, Figeys D, Wang L. 2015. A regulatory network involving β-Catenin, e-Cadherin, PI3k/Akt, and Slug balances self-renewal and differentiation of human pluripotent stem cells in response to Wnt signaling. Stem Cells 33: 1419-1433.
-
(2015)
Stem Cells
, vol.33
, pp. 1419-1433
-
-
Huang, T.-S.1
Li, L.2
Moalim-Nour, L.3
Jia, D.4
Bai, J.5
Yao, Z.6
Bennett, S.A.L.7
Figeys, D.8
Wang, L.9
-
19
-
-
85039911539
-
RNA G-quadruplex secondary structure promotes alternative splicing via the RNA-binding protein hnRNPF
-
Huang H, Zhang J, Harvey SE, Hu X, Cheng C. 2017. RNA G-quadruplex secondary structure promotes alternative splicing via the RNA-binding protein hnRNPF. Genes Dev 31: 2296-2309.
-
(2017)
Genes Dev
, vol.31
, pp. 2296-2309
-
-
Huang, H.1
Zhang, J.2
Harvey, S.E.3
Hu, X.4
Cheng, C.5
-
20
-
-
0035831030
-
′ end formation to DNA damage and tumor suppression
-
′ end formation to DNA damage and tumor suppression. Cell 104: 743-753.
-
(2001)
Cell
, vol.104
, pp. 743-753
-
-
Kleiman, F.E.1
Manley, J.L.2
-
21
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
-
(2009)
Genome Biol
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
22
-
-
84964317491
-
A splicing switch from keto-hexokinase-C to ketohexokinase-A drives hepatocellular carcinoma formation
-
Li X, Qian X, Peng L-X, Jiang Y, Hawke DH, Zheng Y, Xia Y, Lee J-H, Cote G, Wang H, et al. 2016. A splicing switch from keto-hexokinase-C to ketohexokinase-A drives hepatocellular carcinoma formation. Nat Cell Biol 18: 561-571.
-
(2016)
Nat Cell Biol
, vol.18
, pp. 561-571
-
-
Li, X.1
Qian, X.2
Peng, L.-X.3
Jiang, Y.4
Hawke, D.H.5
Zheng, Y.6
Xia, Y.7
Lee, J.-H.8
Cote, G.9
Wang, H.10
-
23
-
-
84885090785
-
SON connects the splicing-regula-tory network with pluripotency in human embryonic stem cells
-
Lu X, Göke J, Sachs F, Jacques P-É, Liang H, Feng B, Bourque G, Bubulya PA, Ng H-H. 2013. SON connects the splicing-regula-tory network with pluripotency in human embryonic stem cells. Nat Cell Biol 15: 1141-1152.
-
(2013)
Nat Cell Biol
, vol.15
, pp. 1141-1152
-
-
Lu, X.1
Göke, J.2
Sachs, F.3
Jacques, P.-É.4
Liang, H.5
Feng, B.6
Bourque, G.7
Bubulya, P.A.8
Ng, H.-H.9
-
24
-
-
84903140423
-
A cytoplasmic quaking I isoform regulates the hnRNP F/H-dependent alternative splicing pathway in myelinating glia
-
Mandler MD, Ku L, Feng Y. 2014. A cytoplasmic quaking I isoform regulates the hnRNP F/H-dependent alternative splicing pathway in myelinating glia. Nucleic Acids Res 42: 7319-7329.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 7319-7329
-
-
Mandler, M.D.1
Ku, L.2
Feng, Y.3
-
25
-
-
43049135928
-
Fibroblast growth factor 4 and its novel splice isoform have opposing effects on the maintenance of human embryonic stem cell self-renewal
-
Mayshar Y, Rom E, Chumakov I, Kronman A, Yayon A, Benve-nisty N. 2008. Fibroblast growth factor 4 and its novel splice isoform have opposing effects on the maintenance of human embryonic stem cell self-renewal. Stem Cells 26: 767-774.
-
(2008)
Stem Cells
, vol.26
, pp. 767-774
-
-
Mayshar, Y.1
Rom, E.2
Chumakov, I.3
Kronman, A.4
Yayon, A.5
Benve-Nisty, N.6
-
26
-
-
0035395874
-
Tcf3 and Lef1 regulate lineage differentiation of multipotent stem cells in skin
-
Merrill BJ, Gat U, DasGupta R, Fuchs E. 2001. Tcf3 and Lef1 regulate lineage differentiation of multipotent stem cells in skin. Genes Dev 15: 1688-1705.
-
(2001)
Genes Dev
, vol.15
, pp. 1688-1705
-
-
Merrill, B.J.1
Gat, U.2
Dasgupta, R.3
Fuchs, E.4
-
27
-
-
0842344619
-
Tcf3: A transcriptional regulator of axis induction in the early embryo
-
Merrill BJ, Pasolli HA, Polak L, Rendl M, García-García MJ, Anderson KV, Fuchs E. 2004. Tcf3: a transcriptional regulator of axis induction in the early embryo. Development 131: 263-274.
-
(2004)
Development
, vol.131
, pp. 263-274
-
-
Merrill, B.J.1
Pasolli, H.A.2
Polak, L.3
Rendl, M.4
García-García, M.J.5
Anderson, K.V.6
Fuchs, E.7
-
28
-
-
0028867814
-
The generally expressed hnRNP F is involved in a neural-specific pre-mRNA splicing event
-
Min H, Chan RC, Black DL. 1995. The generally expressed hnRNP F is involved in a neural-specific pre-mRNA splicing event. Genes Dev 9: 2659-2671.
-
(1995)
Genes Dev
, vol.9
, pp. 2659-2671
-
-
Min, H.1
Chan, R.C.2
Black, D.L.3
-
29
-
-
85019479989
-
The E-Id protein axis specifies adaptive lymphoid cell identity and suppresses thymic innate lymphoid cell development
-
Miyazaki M, Miyazaki K, Chen K, Jin Y, Turner J, Moore AJ, Saito R, Yoshida K, Ogawa S, Rodewald H-R, et al. 2017. The E-Id protein axis specifies adaptive lymphoid cell identity and suppresses thymic innate lymphoid cell development. Immunity 46: 818-834.e4.
-
(2017)
Immunity
, vol.46
, pp. 818-834
-
-
Miyazaki, M.1
Miyazaki, K.2
Chen, K.3
Jin, Y.4
Turner, J.5
Moore, A.J.6
Saito, R.7
Yoshida, K.8
Ogawa, S.9
Rodewald, H.-R.10
-
30
-
-
0024554495
-
A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless, MyoD, and myc proteins
-
Murre C, McCaw PS, Baltimore D. 1989. A new DNA binding and dimerization motif in immunoglobulin enhancer binding, daughterless, MyoD, and myc proteins. Cell 56: 777-783.
-
(1989)
Cell
, vol.56
, pp. 777-783
-
-
Murre, C.1
McCaw, P.S.2
Baltimore, D.3
-
31
-
-
39349106325
-
Differentiation of embryonic stem cells to clinically relevant populations: Lessons from embryonic development
-
Murry CE, Keller G. 2008. Differentiation of embryonic stem cells to clinically relevant populations: lessons from embryonic development. Cell 132: 661-680.
-
(2008)
Cell
, vol.132
, pp. 661-680
-
-
Murry, C.E.1
Keller, G.2
-
32
-
-
33749065765
-
Tcf3 governs stem cell features and represses cell fate determination in skin
-
Nguyen H, Rendl M, Fuchs E. 2006. Tcf3 governs stem cell features and represses cell fate determination in skin. Cell 127: 171-183.
-
(2006)
Cell
, vol.127
, pp. 171-183
-
-
Nguyen, H.1
Rendl, M.2
Fuchs, E.3
-
33
-
-
77956243773
-
Molecular pathway and cell state responsible for disso-ciation-induced apoptosis in human pluripotent stem cells
-
Ohgushi M, Matsumura M, Eiraku M, Murakami K, Aramaki T, Nishiyama A, Muguruma K, Nakano T, Suga H, Ueno M, et al. 2010. Molecular pathway and cell state responsible for disso-ciation-induced apoptosis in human pluripotent stem cells. Cell Stem Cell 7: 225-239.
-
(2010)
Cell Stem Cell
, vol.7
, pp. 225-239
-
-
Ohgushi, M.1
Matsumura, M.2
Eiraku, M.3
Murakami, K.4
Aramaki, T.5
Nishiyama, A.6
Muguruma, K.7
Nakano, T.8
Suga, H.9
Ueno, M.10
-
34
-
-
33749645068
-
Repression of Nanog gene transcription by Tcf3 limits embryonic stem cell self-renewal
-
Pereira L, Yi F, Merrill BJ. 2006. Repression of Nanog gene transcription by Tcf3 limits embryonic stem cell self-renewal. Mol Cell Biol 26: 7479-7491.
-
(2006)
Mol Cell Biol
, vol.26
, pp. 7479-7491
-
-
Pereira, L.1
Yi, F.2
Merrill, B.J.3
-
35
-
-
0035920152
-
A new role for E12/E47 in the repression of E-cadherin expression and epithelial-mesenchymal transitions
-
Pérez-Moreno MA, Locascio A, Rodrigo I, Dhondt G, Portillo F, Nieto MA, Cano A. 2001. A new role for E12/E47 in the repression of E-cadherin expression and epithelial-mesenchymal transitions. J Biol Chem 276: 27424-27431.
-
(2001)
J Biol Chem
, vol.276
, pp. 27424-27431
-
-
Pérez-Moreno, M.A.1
Locascio, A.2
Rodrigo, I.3
Dhondt, G.4
Portillo, F.5
Nieto, M.A.6
Cano, A.7
-
36
-
-
85032785926
-
The E2A splice variant E47 regulates the differentiation of projection neurons via p57(KIP2) during cortical development
-
Pfurr S, Chu Y-H, Bohrer C, Greulich F, Beattie R, Mammadzada K, Hils M, Arnold SJ, Taylor V, Schachtrup K, et al. 2017. The E2A splice variant E47 regulates the differentiation of projection neurons via p57(KIP2) during cortical development. Development 144: 3917-3931.
-
(2017)
Development
, vol.144
, pp. 3917-3931
-
-
Pfurr, S.1
Chu, Y.-H.2
Bohrer, C.3
Greulich, F.4
Beattie, R.5
Mammadzada, K.6
Hils, M.7
Arnold, S.J.8
Taylor, V.9
Schachtrup, K.10
-
37
-
-
84857687714
-
SpliceAid 2: A database of human splicing factors expression data and RNA target motifs
-
Piva F, Giulietti M, Burini AB, Principato G. 2012. SpliceAid 2: a database of human splicing factors expression data and RNA target motifs. Hum Mutat 33: 81-85.
-
(2012)
Hum Mutat
, vol.33
, pp. 81-85
-
-
Piva, F.1
Giulietti, M.2
Burini, A.B.3
Principato, G.4
-
38
-
-
84938421758
-
Distinct brain transcriptome profiles in C9orf72-associated and sporadic ALS
-
Prudencio M, Belzil VV, Batra R, Ross CA, Gendron TF, Pregent LJ, Murray ME, Overstreet KK, Piazza-Johnston AE, Desaro P, et al. 2015. Distinct brain transcriptome profiles in C9orf72-associated and sporadic ALS. Nat Neurosci 18: 1175-1182.
-
(2015)
Nat Neurosci
, vol.18
, pp. 1175-1182
-
-
Prudencio, M.1
Belzil, V.V.2
Batra, R.3
Ross, C.A.4
Gendron, T.F.5
Pregent, L.J.6
Murray, M.E.7
Overstreet, K.K.8
Piazza-Johnston, A.E.9
Desaro, P.10
-
39
-
-
78649551191
-
Differential roles of Sall4 isoforms in embryonic stem cell pluripotency
-
Rao S, Zhen S, Roumiantsev S, McDonald LT, Yuan G-C, Orkin SH. 2010. Differential roles of Sall4 isoforms in embryonic stem cell pluripotency. Mol Cell Biol 30: 5364-5380.
-
(2010)
Mol Cell Biol
, vol.30
, pp. 5364-5380
-
-
Rao, S.1
Zhen, S.2
Roumiantsev, S.3
McDonald, L.T.4
Yuan, G.-C.5
Orkin, S.H.6
-
40
-
-
79959863480
-
C-Myc regulates RNA splicing of the A-Raf kinase and its activation of the ERK pathway
-
Rauch J, Moran-Jones K, Albrecht V, Schwarzl T, Hunter K, Gires O, Kolch W. 2011. c-Myc regulates RNA splicing of the A-Raf kinase and its activation of the ERK pathway. Cancer Res 71: 4664-4674.
-
(2011)
Cancer Res
, vol.71
, pp. 4664-4674
-
-
Rauch, J.1
Moran-Jones, K.2
Albrecht, V.3
Schwarzl, T.4
Hunter, K.5
Gires, O.6
Kolch, W.7
-
41
-
-
79959929522
-
E-cadherin is crucial for embryonic stem cell pluripotency and can replace OCT4 during somatic cell reprogramming
-
Redmer T, Diecke S, Grigoryan T, Quiroga-Negreira A, Birchmeier W, Besser D. 2011. E-cadherin is crucial for embryonic stem cell pluripotency and can replace OCT4 during somatic cell reprogramming. EMBO Rep 12: 720-726.
-
(2011)
EMBO Rep
, vol.12
, pp. 720-726
-
-
Redmer, T.1
Diecke, S.2
Grigoryan, T.3
Quiroga-Negreira, A.4
Birchmeier, W.5
Besser, D.6
-
42
-
-
77953764202
-
Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation
-
Salomonis N, Schlieve CR, Pereira L, Wahlquist C, Colas A, Zam-bon AC, Vranizan K, Spindler MJ, Pico AR, Cline MS, et al. 2010. Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation. Proc Natl Acad Sci 107: 10514-10519.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 10514-10519
-
-
Salomonis, N.1
Schlieve, C.R.2
Pereira, L.3
Wahlquist, C.4
Colas, A.5
Zam-Bon, A.C.6
Vranizan, K.7
Spindler, M.J.8
Pico, A.R.9
Cline, M.S.10
-
43
-
-
0041560908
-
Molecular signature of human embryonic stem cells and its comparison with the mouse
-
Sato N, Sanjuan IM, Heke M, Uchida M, Naef F, Brivanlou AH. 2003. Molecular signature of human embryonic stem cells and its comparison with the mouse. Dev Biol 260: 404-413.
-
(2003)
Dev Biol
, vol.260
, pp. 404-413
-
-
Sato, N.1
Sanjuan, I.M.2
Heke, M.3
Uchida, M.4
Naef, F.5
Brivanlou, A.H.6
-
44
-
-
84867051939
-
Burkitt lymphoma pathogenesis and therapeutic targets from structural and functional genomics
-
Schmitz R, Young RM, Ceribelli M, Jhavar S, Xiao W, Zhang M, Wright G, Shaffer AL, Hodson DJ, Buras E, et al. 2012. Burkitt lymphoma pathogenesis and therapeutic targets from structural and functional genomics. Nature 490: 116-120.
-
(2012)
Nature
, vol.490
, pp. 116-120
-
-
Schmitz, R.1
Young, R.M.2
Ceribelli, M.3
Jhavar, S.4
Xiao, W.5
Zhang, M.6
Wright, G.7
Shaffer, A.L.8
Hodson, D.J.9
Buras, E.10
-
45
-
-
41949117520
-
Cdc42 regulates E-cadherin ubiquitination and degradation through an epidermal growth factor receptor to Src-mediated pathway
-
Shen Y, Hirsch DS, Sasiela CA, Wu WJ. 2008. Cdc42 regulates E-cadherin ubiquitination and degradation through an epidermal growth factor receptor to Src-mediated pathway. J Biol Chem 283: 5127-5137.
-
(2008)
J Biol Chem
, vol.283
, pp. 5127-5137
-
-
Shen, Y.1
Hirsch, D.S.2
Sasiela, C.A.3
Wu, W.J.4
-
46
-
-
84860385776
-
MATS: A Bayesian framework for flexible detection of differential alternative splicing from RNA-seq data
-
Shen S, Park JW, Huang J, Dittmar KA, Lu ZX, Zhou Q, Carstens RP, Xing Y. 2012. MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-seq data. Nucleic Acids Res 40: e61.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 61
-
-
Shen, S.1
Park, J.W.2
Huang, J.3
Dittmar, K.A.4
Lu, Z.X.5
Zhou, Q.6
Carstens, R.P.7
Xing, Y.8
-
47
-
-
85044695561
-
TCF7L1 suppresses primitive streak gene expression to support human embryonic stem cell pluripotency
-
Sierra RA, Hoverter NP, Ramirez RN, Vuong LM, Mortazavi A, Merrill BJ, Waterman ML, Donovan PJ. 2018. TCF7L1 suppresses primitive streak gene expression to support human embryonic stem cell pluripotency. Development 145: dev161075.
-
(2018)
Development
, vol.145
-
-
Sierra, R.A.1
Hoverter, N.P.2
Ramirez, R.N.3
Vuong, L.M.4
Mortazavi, A.5
Merrill, B.J.6
Waterman, M.L.7
Donovan, P.J.8
-
48
-
-
0026020867
-
An inhibitory domain of E12 transcription factor prevents DNA binding in E12 homodimers but not in E12 heterodimers
-
Sun XH, Baltimore D. 1991. An inhibitory domain of E12 transcription factor prevents DNA binding in E12 homodimers but not in E12 heterodimers. Cell 64: 459-470.
-
(1991)
Cell
, vol.64
, pp. 459-470
-
-
Sun, X.H.1
Baltimore, D.2
-
49
-
-
54849408417
-
T-cell factor 3 regulates embryonic stem cell pluripotency and self-renewal by the transcriptional control of multiple lineage pathways
-
Tam W-L, Lim CY, Han J, Zhang J, Ang Y-S, Ng H-H, Yang H, Lim B. 2008. T-cell factor 3 regulates embryonic stem cell pluripotency and self-renewal by the transcriptional control of multiple lineage pathways. Stem Cells 26: 2019-2031.
-
(2008)
Stem Cells
, vol.26
, pp. 2019-2031
-
-
Tam, W.-L.1
Lim, C.Y.2
Han, J.3
Zhang, J.4
Ang, Y.-S.5
Ng, H.-H.6
Yang, H.7
Lim, B.8
-
50
-
-
0032491416
-
Embryonic stem cell lines derived from human blastocysts
-
Thomson JA. 1998. Embryonic stem cell lines derived from human blastocysts. Science 282: 1145-1147.
-
(1998)
Science
, vol.282
, pp. 1145-1147
-
-
Thomson, J.A.1
-
51
-
-
84931070961
-
Hepatitis C virus core protein induces epithelial-mesenchymal transition in human hepatocytes by upregulating E12/E47 levels
-
Tiwari I, Yoon M-H, Park B-J, Jang KL. 2015. Hepatitis C virus core protein induces epithelial-mesenchymal transition in human hepatocytes by upregulating E12/E47 levels. Cancer Lett 362: 131-138.
-
(2015)
Cancer Lett
, vol.362
, pp. 131-138
-
-
Tiwari, I.1
Yoon, M.-H.2
Park, B.-J.3
Jang, K.L.4
-
52
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L. 2012. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc 7: 562-578.
-
(2012)
Nat Protoc
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
53
-
-
84899044116
-
MBNL1 and RBFOX2 cooperate to establish a splicing programme involved in pluripotent stem cell differentiation
-
Venables JP, Lapasset L, Gadea G, Fort P, Klinck R, Irimia M, Vignal E, Thibault P, Prinos P, Chabot B, et al. 2013. MBNL1 and RBFOX2 cooperate to establish a splicing programme involved in pluripotent stem cell differentiation. Nat Commun 4: 2480.
-
(2013)
Nat Commun
, vol.4
, pp. 2480
-
-
Venables, J.P.1
Lapasset, L.2
Gadea, G.3
Fort, P.4
Klinck, R.5
Irimia, M.6
Vignal, E.7
Thibault, P.8
Prinos, P.9
Chabot, B.10
-
54
-
-
84883710437
-
Reference loci for RT-qPCR analysis of differentiating human embryonic stem cells
-
Vossaert L, O’Leary T, Van Neste C, Heindryckx B, Vandesom-pele J, De Sutter P, Deforce D. 2013. Reference loci for RT-qPCR analysis of differentiating human embryonic stem cells. BMC Mol Biol 14: 21.
-
(2013)
BMC Mol Biol
, vol.14
, pp. 21
-
-
Vossaert, L.1
O’Leary, T.2
van Neste, C.3
Heindryckx, B.4
Vandesom-Pele, J.5
de Sutter, P.6
Deforce, D.7
-
55
-
-
84946717063
-
E proteins and ID proteins: Helix-loop-helix partners in development and disease
-
Wang L-H, Baker NE. 2015. E proteins and ID proteins: helix-loop-helix partners in development and disease. Dev Cell 35: 269-280.
-
(2015)
Dev Cell
, vol.35
, pp. 269-280
-
-
Wang, L.-H.1
Baker, N.E.2
-
56
-
-
84871343422
-
Global profiling of alternative splicing events and gene expression regulated by hnRNPH/F
-
Wang E, Aslanzadeh V, Papa F, Zhu H, de la Grange P, Cambi F. 2012. Global profiling of alternative splicing events and gene expression regulated by hnRNPH/F. PLoS ONE 7: e51266.
-
(2012)
Plos ONE
, vol.7
-
-
Wang, E.1
Aslanzadeh, V.2
Papa, F.3
Zhu, H.4
de la Grange, P.5
Cambi, F.6
-
57
-
-
34250206996
-
A ROCK inhibitor permits survival of dissociated human embryonic stem cells
-
Watanabe K, Ueno M, Kamiya D, Nishiyama A, Matsumura M, Wataya T, Takahashi JB, Nishikawa S, Nishikawa S, Muguruma K, et al. 2007. A ROCK inhibitor permits survival of dissociated human embryonic stem cells. Nat Biotechnol 25: 681-686.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 681-686
-
-
Watanabe, K.1
Ueno, M.2
Kamiya, D.3
Nishiyama, A.4
Matsumura, M.5
Wataya, T.6
Takahashi, J.B.7
Nishikawa, S.8
Nishikawa, S.9
Muguruma, K.10
-
58
-
-
79959950773
-
Inhibition of glycogen synthase kinase-3 alleviates Tcf3 repression of the pluripotency network and increases embryonic stem cell resistance to differentiation
-
Wray J, Kalkan T, Gomez-Lopez S, Eckardt D, Cook A, Kemler R, Smith A. 2011. Inhibition of glycogen synthase kinase-3 alleviates Tcf3 repression of the pluripotency network and increases embryonic stem cell resistance to differentiation. Nat Cell Biol 13: 838-845.
-
(2011)
Nat Cell Biol
, vol.13
, pp. 838-845
-
-
Wray, J.1
Kalkan, T.2
Gomez-Lopez, S.3
Eckardt, D.4
Cook, A.5
Kemler, R.6
Smith, A.7
-
59
-
-
84859959634
-
Antibody-direct-ed lentiviral gene transduction for live-cell monitoring and selection of human iPS and hES cells
-
Wu D, Seita Y, Zhang X, Lu C-W, Roth MJ. 2012. Antibody-direct-ed lentiviral gene transduction for live-cell monitoring and selection of human iPS and hES cells. PLoS ONE 7: e34778.
-
(2012)
Plos ONE
, vol.7
-
-
Wu, D.1
Seita, Y.2
Zhang, X.3
Lu, C.-W.4
Roth, M.J.5
-
60
-
-
70349843229
-
Splice site strength-dependent activity and genetic buffering by poly-G runs
-
Xiao X, Wang Z, Jang M, Nutiu R, Wang ET, Burge CB. 2009. Splice site strength-dependent activity and genetic buffering by poly-G runs. Nat Struct Mol Biol 16: 1094-1100.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 1094-1100
-
-
Xiao, X.1
Wang, Z.2
Jang, M.3
Nutiu, R.4
Wang, E.T.5
Burge, C.B.6
-
61
-
-
84878282421
-
Epige-nomic analysis of multilineage differentiation of human embryonic stem cells
-
Xie W, Schultz MD, Lister R, Hou Z, Rajagopal N, Ray P, Whitaker JW, Tian S, Hawkins RD, Leung D, et al. 2013. Epige-nomic analysis of multilineage differentiation of human embryonic stem cells. Cell 153: 1134-1148.
-
(2013)
Cell
, vol.153
, pp. 1134-1148
-
-
Xie, W.1
Schultz, M.D.2
Lister, R.3
Hou, Z.4
Rajagopal, N.5
Ray, P.6
Whitaker, J.W.7
Tian, S.8
Hawkins, R.D.9
Leung, D.10
-
62
-
-
1842853507
-
BMP4 initiates human embryonic stem cell differentiation to trophoblast
-
Xu R-H, Chen X, Li DS, Li R, Addicks GC, Glennon C, Zwaka TP, Thomson JA. 2002. BMP4 initiates human embryonic stem cell differentiation to trophoblast. Nat Biotechnol 20: 1261-1264.
-
(2002)
Nat Biotechnol
, vol.20
, pp. 1261-1264
-
-
Xu, R.-H.1
Chen, X.2
Li, D.S.3
Li, R.4
Addicks, G.C.5
Glennon, C.6
Zwaka, T.P.7
Thomson, J.A.8
-
63
-
-
84905833596
-
A heroin addiction severity-associ-ated intronic single nucleotide polymorphism modulates alternative pre-mRNA splicing of the μ opioid receptor gene OPRM1 via hnRNPH interactions
-
Xu J, Lu Z, Xu M, Pan L, Deng Y, Xie X, Liu H, Ding S, Hurd YL, Pasternak GW, et al. 2014. A heroin addiction severity-associ-ated intronic single nucleotide polymorphism modulates alternative pre-mRNA splicing of the μ opioid receptor gene OPRM1 via hnRNPH interactions. J Neurosci 34: 11048-11066.
-
(2014)
J Neurosci
, vol.34
, pp. 11048-11066
-
-
Xu, J.1
Lu, Z.2
Xu, M.3
Pan, L.4
Deng, Y.5
Xie, X.6
Liu, H.7
Ding, S.8
Hurd, Y.L.9
Pasternak, G.W.10
-
64
-
-
48449105489
-
Tcf3 functions as a steady-state limiter of transcriptional programs of mouse embryonic stem cell self-renewal
-
Yi F, Pereira L, Merrill BJ. 2008. Tcf3 functions as a steady-state limiter of transcriptional programs of mouse embryonic stem cell self-renewal. Stem Cells 26: 1951-1960.
-
(2008)
Stem Cells
, vol.26
, pp. 1951-1960
-
-
Yi, F.1
Pereira, L.2
Merrill, B.J.3
-
65
-
-
79959963618
-
Opposing effects of Tcf3 and Tcf1 control Wnt stimulation of embryonic stem cell self-renewal
-
Yi F, Pereira L, Hoffman JA, Shy BR, Yuen CM, Liu DR, Merrill BJ. 2011. Opposing effects of Tcf3 and Tcf1 control Wnt stimulation of embryonic stem cell self-renewal. Nat Cell Biol 13: 762-770.
-
(2011)
Nat Cell Biol
, vol.13
, pp. 762-770
-
-
Yi, F.1
Pereira, L.2
Hoffman, J.A.3
Shy, B.R.4
Yuen, C.M.5
Liu, D.R.6
Merrill, B.J.7
|