-
1
-
-
84865070369
-
A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
-
Jinek, M. et al. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337, 816-822 (2012).
-
(2012)
Science
, vol.337
, pp. 816-822
-
-
Jinek, M.1
-
2
-
-
84873729095
-
Multiplex genome engineering using CRISPR/Cas systems
-
Cong, L. et al. Multiplex genome engineering using CRISPR/Cas systems. Science 339, 819-823 (2013).
-
(2013)
Science
, vol.339
, pp. 819-823
-
-
Cong, L.1
-
3
-
-
84873734105
-
RNA-guided human genome engineering via Cas9
-
Mali, P. et al. RNA-guided human genome engineering via Cas9. Science 339, 823-826 (2013).
-
(2013)
Science
, vol.339
, pp. 823-826
-
-
Mali, P.1
-
4
-
-
84884165315
-
DNA targeting specificity of RNA-guided Cas9 nucleases
-
Hsu, P. D. et al. DNA targeting specificity of RNA-guided Cas9 nucleases. Nat. Biotechnol. 31, 827-832 (2013).
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 827-832
-
-
Hsu, P.D.1
-
5
-
-
84969963103
-
Knock-in of large reporter genes in human cells via CRISPR/ Cas9-induced homology-dependent and independent DNA repair
-
He, X. et al. Knock-in of large reporter genes in human cells via CRISPR/ Cas9-induced homology-dependent and independent DNA repair. Nucleic Acids Res. 44, e85 (2016).
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. e85
-
-
He, X.1
-
6
-
-
35948946526
-
Gene editing in human stem cells using zinc finger nucleases and integrase-defective lentiviral vector delivery
-
Lombardo, A. et al. Gene editing in human stem cells using zinc finger nucleases and integrase-defective lentiviral vector delivery. Nat. Biotechnol. 25, 1298-1306 (2007).
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 1298-1306
-
-
Lombardo, A.1
-
7
-
-
84983792922
-
Enhanced homologydirected human genome engineering by controlled timing of CRISPR/Cas9 delivery
-
Lin, S., Staahl, B. T., Alla, R. K. &Doudna, J. A. Enhanced homologydirected human genome engineering by controlled timing of CRISPR/Cas9 delivery. Elife 3, e04766 (2014).
-
(2014)
Elife
, vol.3
, pp. e04766
-
-
Lin, S.1
Staahl, B.T.2
Alla, R.K.3
Doudna, J.A.4
-
8
-
-
0037336820
-
Homologous recombination in human embryonic stem cells
-
Zwaka, T. P. &Thomson, J. A. Homologous recombination in human embryonic stem cells. Nat. Biotechnol. 21, 319-321 (2003).
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 319-321
-
-
Zwaka, T.P.1
Thomson, J.A.2
-
9
-
-
70249114821
-
Efficient targeting of expressed and silent genes in human ESCs and iPSCs using zinc-finger nucleases
-
Hockemeyer, D. et al. Efficient targeting of expressed and silent genes in human ESCs and iPSCs using zinc-finger nucleases. Nat. Biotechnol. 27, 851-857 (2009).
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 851-857
-
-
Hockemeyer, D.1
-
10
-
-
80054752526
-
Gene targeting in human pluripotent stem cells
-
Liu, Y. &Rao, M. Gene targeting in human pluripotent stem cells. Methods Mol. Biol. 767, 355-367 (2011).
-
(2011)
Methods Mol. Biol.
, vol.767
, pp. 355-367
-
-
Liu, Y.1
Rao, M.2
-
11
-
-
84966930890
-
Induced pluripotent stem cells meet genome editing
-
Hockemeyer, D. &Jaenisch, R. Induced pluripotent stem cells meet genome editing. Cell Stem Cell 18, 573-586 (2016).
-
(2016)
Cell Stem Cell
, vol.18
, pp. 573-586
-
-
Hockemeyer, D.1
Jaenisch, R.2
-
12
-
-
73049105546
-
Modeling disease in human ESCs using an efficient BAC-based homologous recombination system
-
Song, H., Chung, S. K. &Xu, Y. Modeling disease in human ESCs using an efficient BAC-based homologous recombination system. Cell Stem Cell 6, 80-89 (2010).
-
(2010)
Cell Stem Cell
, vol.6
, pp. 80-89
-
-
Song, H.1
Chung, S.K.2
Xu, Y.3
-
13
-
-
84929276488
-
Efficient CRISPR-Cas9-mediated generation of knockin human pluripotent stem cells lacking undesired mutations at the targeted locus
-
Merkle, F. T. et al. Efficient CRISPR-Cas9-mediated generation of knockin human pluripotent stem cells lacking undesired mutations at the targeted locus. Cell Rep. 11, 875-883 (2015).
-
(2015)
Cell Rep.
, vol.11
, pp. 875-883
-
-
Merkle, F.T.1
-
14
-
-
85019220581
-
Human pluripotent stem cells recurrently acquire and expand dominant negative P53 mutations
-
Merkle, F. T. et al. Human pluripotent stem cells recurrently acquire and expand dominant negative P53 mutations. Nature 545, 229-233 (2017).
-
(2017)
Nature
, vol.545
, pp. 229-233
-
-
Merkle, F.T.1
-
15
-
-
84959536508
-
Pluripotent stem cells in disease modelling and drug discovery
-
Avior, Y., Sagi, I. &Benvenisty, N. Pluripotent stem cells in disease modelling and drug discovery. Nat. Rev. Mol. Cell Biol. 17, 170-182 (2016).
-
(2016)
Nat. Rev. Mol. Cell Biol.
, vol.17
, pp. 170-182
-
-
Avior, Y.1
Sagi, I.2
Benvenisty, N.3
-
16
-
-
84905905141
-
An iCRISPR platform for rapid, multiplexable, and inducible genome editing in human pluripotent stem cells
-
González, F. et al. An iCRISPR platform for rapid, multiplexable, and inducible genome editing in human pluripotent stem cells. Cell Stem Cell 15, 215-226 (2014).
-
(2014)
Cell Stem Cell
, vol.15
, pp. 215-226
-
-
González, F.1
-
17
-
-
85000607350
-
Genetic ablation of AXL does not protect human neural progenitor cells and cerebral organoids from Zika virus infection
-
Wells, M. F. et al. Genetic ablation of AXL does not protect human neural progenitor cells and cerebral organoids from Zika virus infection. Stem Cell 19, 703-708 (2016).
-
(2016)
Stem Cell
, vol.19
, pp. 703-708
-
-
Wells, M.F.1
-
18
-
-
84930943161
-
Rapid and highly efficient mammalian cell engineering via Cas9 protein transfection
-
Liang, X. et al. Rapid and highly efficient mammalian cell engineering via Cas9 protein transfection. J. Biotechnol. 208, 44-53 (2015).
-
(2015)
J. Biotechnol.
, vol.208
, pp. 44-53
-
-
Liang, X.1
-
19
-
-
84952943845
-
Rationally engineered Cas9 nucleases with improved specificity
-
Slaymaker, I. M. et al. Rationally engineered Cas9 nucleases with improved specificity. Science 351, 84-88 (2015).
-
(2015)
Science
, vol.351
, pp. 84-88
-
-
Slaymaker, I.M.1
-
20
-
-
33748195107
-
Rapid, reversible, and tunable method to regulate protein function in living cells using synthetic small molecules
-
Banaszynski, L. A., Chen, L., Maynard-Smith, L. A., Ooi, A. G. L. &Wandless, T. J. A. Rapid, reversible, and tunable method to regulate protein function in living cells using synthetic small molecules. Cell 126, 995-1004 (2006).
-
(2006)
Cell
, vol.126
, pp. 995-1004
-
-
Banaszynski, L.A.1
Chen, L.2
Maynard-Smith, L.A.3
Ooi, A.G.L.4
Wandless, T.J.A.5
-
21
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-
Love, M. I., Huber, W. &Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550 (2014).
-
(2014)
Genome Biol.
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
22
-
-
84859748911
-
Causal reasoning on biological networks: Interpreting transcriptional changes
-
Chindelevitch, L. et al. Causal reasoning on biological networks: interpreting transcriptional changes. Bioinformatics 28, 1114-1121 (2012).
-
(2012)
Bioinformatics
, vol.28
, pp. 1114-1121
-
-
Chindelevitch, L.1
-
23
-
-
84902144066
-
Causal network models for predicting compound targets and driving pathways in cancer
-
Jaeger, S. et al. Causal network models for predicting compound targets and driving pathways in cancer. J. Biomol. Screen. 19, 791-802 (2014).
-
(2014)
J. Biomol. Screen.
, vol.19
, pp. 791-802
-
-
Jaeger, S.1
-
24
-
-
0027109075
-
P53, Guardian of the genome
-
Lane, D. P. p53, Guardian of the genome. Nature 358, 15-16 (1992).
-
(1992)
Nature
, vol.358
, pp. 15-16
-
-
Lane, D.P.1
-
25
-
-
0027359827
-
WAF1, a potential mediator of p53 tumor suppression
-
El-Deiry, W. S. et al. WAF1, a potential mediator of p53 tumor suppression. Cell 75, 817-825 (1993).
-
(1993)
Cell
, vol.75
, pp. 817-825
-
-
El-Deiry, W.S.1
-
26
-
-
0032508608
-
Activation of the ATM kinase by ionizing radiation and phosphorylation of p53
-
Canman, C. E. et al. Activation of the ATM kinase by ionizing radiation and phosphorylation of p53. Science 281, 1677-1679 (1998).
-
(1998)
Science
, vol.281
, pp. 1677-1679
-
-
Canman, C.E.1
-
27
-
-
10744221485
-
In vivo activation of the p53 pathway by small-molecule antagonists of MDM2
-
Vassilev, L. T. et al. In vivo activation of the p53 pathway by small-molecule antagonists of MDM2. Science 303, 844-848 (2004).
-
(2004)
Science
, vol.303
, pp. 844-848
-
-
Vassilev, L.T.1
-
28
-
-
77951978240
-
Multiple roles of the cell cycle inhibitor p21(CDKN1A) in the DNA damage response
-
Cazzalini, O., Scovassi, A. I., Savio, M., Stivala, L. A. &Prosperi, E. Multiple roles of the cell cycle inhibitor p21(CDKN1A) in the DNA damage response. Mutat. Res. 704, 12-20 (2010).
-
(2010)
Mutat. Res.
, vol.704
, pp. 12-20
-
-
Cazzalini, O.1
Scovassi, A.I.2
Savio, M.3
Stivala, L.A.4
Prosperi, E.5
-
29
-
-
84925341709
-
A comparison of non-integrating reprogramming methods
-
Schlaeger, T. M. et al. A comparison of non-integrating reprogramming methods. Nat. Biotechnol. 33, 58-63 (2015).
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 58-63
-
-
Schlaeger, T.M.1
-
30
-
-
69349100179
-
Suppression of induced pluripotent stem cell generation by the p53-p21 pathway
-
Hong, H. et al. Suppression of induced pluripotent stem cell generation by the p53-p21 pathway. Nature 460, 1132-1135 (2009).
-
(2009)
Nature
, vol.460
, pp. 1132-1135
-
-
Hong, H.1
-
31
-
-
0033566111
-
Signaling through the antigen receptor of B lymphocytes activates a p53-independent pathway of c-Myc-induced apoptosis
-
Hagiyama, H. et al. Signaling through the antigen receptor of B lymphocytes activates a p53-independent pathway of c-Myc-induced apoptosis. Oncogene 18, 4091-4098 (1999).
-
(1999)
Oncogene
, vol.18
, pp. 4091-4098
-
-
Hagiyama, H.1
-
32
-
-
84947471999
-
Identification and characterization of essential genes in the human genome
-
Wang, T. et al. Identification and characterization of essential genes in the human genome. Science 350, 1096-1101 (2015).
-
(2015)
Science
, vol.350
, pp. 1096-1101
-
-
Wang, T.1
-
33
-
-
84982913128
-
CRISPR screens provide a comprehensive assessment of cancer vulnerabilities but generate false-positive hits for highly amplified genomic regions
-
Munoz, D. M. et al. CRISPR screens provide a comprehensive assessment of cancer vulnerabilities but generate false-positive hits for highly amplified genomic regions. Cancer Discov. 6, 900-913 (2016).
-
(2016)
Cancer Discov.
, vol.6
, pp. 900-913
-
-
Munoz, D.M.1
-
34
-
-
85033500525
-
Genomic copy number dictates a gene-independent cell response to CRISPR-Cas9 targeting
-
Aguirre, A. J. et al. Genomic copy number dictates a gene-independent cell response to CRISPR-Cas9 targeting. Cancer Discov. 2641, 617-632 (2016).
-
(2016)
Cancer Discov.
, vol.2641
, pp. 617-632
-
-
Aguirre, A.J.1
-
35
-
-
84949233942
-
High-resolution CRISPR screens reveal fitness genes and genotype-specific cancer liabilities
-
Hart, T. et al. High-resolution CRISPR screens reveal fitness genes and genotype-specific cancer liabilities. Cell 163, 1515-1526 (2015).
-
(2015)
Cell
, vol.163
, pp. 1515-1526
-
-
Hart, T.1
-
36
-
-
84861989101
-
Human embryonic stem cells have constitutively active Bax at the golgi and are primed to undergo rapid apoptosis
-
Dumitru, R. et al. Human embryonic stem cells have constitutively active Bax at the golgi and are primed to undergo rapid apoptosis. Mol. Cell 46, 573-583 (2012).
-
(2012)
Mol. Cell
, vol.46
, pp. 573-583
-
-
Dumitru, R.1
-
37
-
-
84885147908
-
High mitochondrial priming sensitizes hESCs to DNAdamage-induced apoptosis
-
Liu, J. C. et al. High mitochondrial priming sensitizes hESCs to DNAdamage-induced apoptosis. Cell Stem Cell 13, 483-491 (2013).
-
(2013)
Cell Stem Cell
, vol.13
, pp. 483-491
-
-
Liu, J.C.1
-
38
-
-
84855551714
-
Links between mutant p53 and genomic instability
-
Hanel, W. &Moll, U. M. Links between mutant p53 and genomic instability. J. Cell. Biochem. 113, 433-439 (2012).
-
(2012)
J. Cell. Biochem.
, vol.113
, pp. 433-439
-
-
Hanel, W.1
Moll, U.M.2
-
39
-
-
34247172579
-
Regulation of apoptosis and differentiation by p53 in human embryonic stem cells
-
Qin, H. et al. Regulation of apoptosis and differentiation by p53 in human embryonic stem cells. J. Biol. Chem. 282, 5842-5852 (2007).
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 5842-5852
-
-
Qin, H.1
-
40
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-
Love, M. I., Huber, W. &Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550 (2014).
-
(2014)
Genome Biol.
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
41
-
-
84979520533
-
A deleterious Nav1.1 mutation selectively impairs telencephalic inhibitory neurons derived from Dravet syndrome patients
-
Sun, Y. et al. A deleterious Nav1.1 mutation selectively impairs telencephalic inhibitory neurons derived from Dravet syndrome patients. eLife 5, e13073 (2016).
-
(2016)
ELife
, vol.5
, pp. e13073
-
-
Sun, Y.1
-
42
-
-
85000607350
-
Genetic ablation of AXL does not protect human neural progenitor cells and cerebral organoids from Zika virus infection
-
Wells, M. F. et al. Genetic ablation of AXL does not protect human neural progenitor cells and cerebral organoids from Zika virus infection. Stem Cell 19, 703-708 (2016).
-
(2016)
Stem Cell
, vol.19
, pp. 703-708
-
-
Wells, M.F.1
-
43
-
-
84960871327
-
CLK2 inhibition ameliorates autistic features associated with SHANK3 deficiency
-
Bidinosti, M. et al. CLK2 inhibition ameliorates autistic features associated with SHANK3 deficiency. Science 351, 1199-1203 (2016).
-
(2016)
Science
, vol.351
, pp. 1199-1203
-
-
Bidinosti, M.1
-
44
-
-
84978790889
-
Functional CRISPR screening identifies the ufmylation pathway as a regulator of SQSTM1/p62
-
Dejesus, R. et al. Functional CRISPR screening identifies the ufmylation pathway as a regulator of SQSTM1/p62. eLife 5, e17290 (2016).
-
(2016)
ELife
, vol.5
, pp. e17290
-
-
Dejesus, R.1
-
45
-
-
84930943161
-
Rapid and highly efficient mammalian cell engineering via Cas9 protein transfection
-
Liang, X. et al. Rapid and highly efficient mammalian cell engineering via Cas9 protein transfection. J. Biotechnol. 208, 44-53 (2015).
-
(2015)
J. Biotechnol.
, vol.208
, pp. 44-53
-
-
Liang, X.1
-
46
-
-
84871809302
-
STAR: Ultrafast universal RNA-seq aligner
-
Dobin, A. et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29, 15-21 (2013).
-
(2013)
Bioinformatics
, vol.29
, pp. 15-21
-
-
Dobin, A.1
-
47
-
-
84928987900
-
HTSeq-A Python framework to work with high-throughput sequencing data HTSeq
-
Anders, S., Pyl, P. T. &Huber, W. HTSeq-A Python framework to work with high-throughput sequencing data HTSeq. Bioinformatics 31, 166-169 (2015).
-
(2015)
Bioinformatics
, vol.31
, pp. 166-169
-
-
Anders, S.1
Pyl, P.T.2
Huber, W.3
-
48
-
-
79961123152
-
RSEM: Accurate transcript quantification from RNA-Seq data with or without a reference genome
-
Li, B. &Dewey, C. N. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12, 323 (2011).
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 323
-
-
Li, B.1
Dewey, C.N.2
-
49
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl, M. W. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29, 16-21 (2001).
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 16-21
-
-
Pfaffl, M.W.1
-
50
-
-
84859748911
-
Causal reasoning on biological networks: Interpreting transcriptional changes
-
Chindelevitch, L. et al. Causal reasoning on biological networks: interpreting transcriptional changes. Bioinformatics 28, 1114-1121 (2012).
-
(2012)
Bioinformatics
, vol.28
, pp. 1114-1121
-
-
Chindelevitch, L.1
-
51
-
-
84902144066
-
Causal network models for predicting compound targets and driving pathways in cancer
-
Jaeger, S. et al. Causal network models for predicting compound targets and driving pathways in cancer. J. Biomol. Screen. 19, 791-802 (2014).
-
(2014)
J. Biomol. Screen.
, vol.19
, pp. 791-802
-
-
Jaeger, S.1
-
52
-
-
84941051170
-
STRINGv10: Protein-protein interaction networks, integrated over the tree of life
-
Szklarczyk, D. et al. STRINGv10: protein-protein interaction networks, integrated over the tree of life. Nucleic Acids Res. 43, D447-D452 (2015).
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D447-D452
-
-
Szklarczyk, D.1
-
53
-
-
84884288934
-
Double nicking by RNA-guided CRISPR cas9 for enhanced genome editing specificity
-
Ran, F. A. et al. Double nicking by RNA-guided CRISPR cas9 for enhanced genome editing specificity. Cell 154, 1380-1389 (2013).
-
(2013)
Cell
, vol.154
, pp. 1380-1389
-
-
Ran, F.A.1
|