-
1
-
-
83255189758
-
Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage
-
The International Stem Cell Initiative. ISCI.
-
The International Stem Cell Initiative. ISCI. Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage. Nat. Biotechnol. 29, 1132-1144 (2011).
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 1132-1144
-
-
-
2
-
-
84888129842
-
BCL-XL mediates the strong selective advantage of a 20q11.21 amplification commonly found in human embryonic stem cell cultures
-
Avery, S. et al. BCL-XL mediates the strong selective advantage of a 20q11.21 amplification commonly found in human embryonic stem cell cultures. Stem Cell Rep. 1, 379-386 (2013).
-
(2013)
Stem Cell Rep.
, vol.1
, pp. 379-386
-
-
Avery, S.1
-
3
-
-
84892498732
-
Gain of 20q11.21 in human embryonic stem cells improves cell survival by increased expression of Bcl-xL
-
Nguyen, H. T. et al. Gain of 20q11.21 in human embryonic stem cells improves cell survival by increased expression of Bcl-xL. Mol. Hum. Reprod. 20, 168-177 (2014).
-
(2014)
Mol. Hum. Reprod.
, vol.20
, pp. 168-177
-
-
Nguyen, H.T.1
-
4
-
-
48049106854
-
Good manufacturing practice and clinical-grade human embryonic stem cell lines
-
Unger, C., Skottman, H., Blomberg, P., Dilber, M. S. & Hovatta, O. Good manufacturing practice and clinical-grade human embryonic stem cell lines. Hum. Mol. Genet. 17, R48-R53 (2008).
-
(2008)
Hum. Mol. Genet.
, vol.17
, pp. R48-R53
-
-
Unger, C.1
Skottman, H.2
Blomberg, P.3
Dilber, M.S.4
Hovatta, O.5
-
5
-
-
84920024296
-
Clonal hematopoiesis and blood-cancer risk inferred from blood DNA sequence
-
Genovese, G. et al. Clonal hematopoiesis and blood-cancer risk inferred from blood DNA sequence. N. Engl. J. Med. 371, 2477-2487 (2014).
-
(2014)
N. Engl. J. Med.
, vol.371
, pp. 2477-2487
-
-
Genovese, G.1
-
6
-
-
84942236803
-
Somatic mutation in cancer and normal cells
-
Martincorena, I. & Campbell, P. J. Somatic mutation in cancer and normal cells. Science 349, 1483-1489 (2015).
-
(2015)
Science
, vol.349
, pp. 1483-1489
-
-
Martincorena, I.1
Campbell, P.J.2
-
7
-
-
84920053873
-
Age-related clonal hematopoiesis associated with adverse outcomes
-
Jaiswal, S. et al. Age-related clonal hematopoiesis associated with adverse outcomes. N. Engl. J. Med. 371, 2488-2498 (2014).
-
(2014)
N. Engl. J. Med.
, vol.371
, pp. 2488-2498
-
-
Jaiswal, S.1
-
8
-
-
34447295350
-
Characterization of human embryonic stem cell lines by the International Stem Cell Initiative
-
Adewumi, O. et al. Characterization of human embryonic stem cell lines by the International Stem Cell Initiative. Nat. Biotechnol. 25, 803-816 (2007).
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 803-816
-
-
Adewumi, O.1
-
9
-
-
84994560200
-
Detecting genetic mosaicism in cultures of human pluripotent stem cells
-
Baker, D. et al. Detecting genetic mosaicism in cultures of human pluripotent stem cells. Stem Cell Rep. 7, 998-1012 (2016).
-
(2016)
Stem Cell Rep.
, vol.7
, pp. 998-1012
-
-
Baker, D.1
-
10
-
-
84923014395
-
Human embryonic stem cell-derived retinal pigment epithelium in patients with age-related macular degeneration and Stargardt's macular dystrophy: Follow-up of two open-label phase 1/2 studies
-
Schwartz, S. D. et al. Human embryonic stem cell-derived retinal pigment epithelium in patients with age-related macular degeneration and Stargardt's macular dystrophy: follow-up of two open-label phase 1/2 studies. Lancet 385, 509-516 (2015).
-
(2015)
Lancet
, vol.385
, pp. 509-516
-
-
Schwartz, S.D.1
-
11
-
-
84982253941
-
Analysis of protein-coding genetic variation in 60,706 humans
-
Lek, M. et al. Analysis of protein-coding genetic variation in 60,706 humans. Nature 536, 285-291 (2016).
-
(2016)
Nature
, vol.536
, pp. 285-291
-
-
Lek, M.1
-
12
-
-
84946040120
-
COSMIC: Exploring the world's knowledge of somatic mutations in human cancer
-
Forbes, S. A. et al. COSMIC: exploring the world's knowledge of somatic mutations in human cancer. Nucleic Acids Res. 43, D805-D811 (2015).
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D805-D811
-
-
Forbes, S.A.1
-
13
-
-
84855401988
-
International Cancer Genome Consortium data portal - A one-stop shop for cancer genomics data
-
Zhang, J. et al. International Cancer Genome Consortium data portal-a one-stop shop for cancer genomics data. Database 2011, bar026 (2011).
-
(2011)
Database
, vol.2011
, pp. bar026
-
-
Zhang, J.1
-
14
-
-
84982193679
-
TP53 variations in human cancers: New lessons from the IARC TP53 database and genomics data
-
Bouaoun, L. et al. TP53 variations in human cancers: new lessons from the IARC TP53 database and genomics data. Hum. Mutat. 37, 865-876 (2016).
-
(2016)
Hum. Mutat.
, vol.37
, pp. 865-876
-
-
Bouaoun, L.1
-
15
-
-
0034676455
-
Surfing the p53 network
-
Vogelstein, B., Lane, D. & Levine, A. J. Surfing the p53 network. Nature 408, 307-310 (2000).
-
(2000)
Nature
, vol.408
, pp. 307-310
-
-
Vogelstein, B.1
Lane, D.2
Levine, A.J.3
-
16
-
-
0025145277
-
5-methylcytosine as an endogenous mutagen in the human LDL receptor and p53 genes
-
Rideout, W. M. III, Coetzee, G. A., Olumi, A. F. & Jones, P. A. 5-methylcytosine as an endogenous mutagen in the human LDL receptor and p53 genes. Science 249, 1288-1290 (1990).
-
(1990)
Science
, vol.249
, pp. 1288-1290
-
-
Rideout, W.M.1
Coetzee, G.A.2
Olumi, A.F.3
Jones, P.A.4
-
17
-
-
0027983669
-
Crystal structure of a p53 tumor suppressor-DNA complex: Understanding tumorigenic mutations
-
Cho, Y., Gorina, S., Jeffrey, P. D. & Pavletich, N. P. Crystal structure of a p53 tumor suppressor-DNA complex: understanding tumorigenic mutations. Science 265, 346-355 (1994).
-
(1994)
Science
, vol.265
, pp. 346-355
-
-
Cho, Y.1
Gorina, S.2
Jeffrey, P.D.3
Pavletich, N.P.4
-
18
-
-
1842536849
-
Mutant p53 exerts a dominant negative effect by preventing wild-type p53 from binding to the promoter of its target genes
-
Willis, A., Jung, E. J., Wakefield, T. & Chen, X. Mutant p53 exerts a dominant negative effect by preventing wild-type p53 from binding to the promoter of its target genes. Oncogene 23, 2330-2338 (2004).
-
(2004)
Oncogene
, vol.23
, pp. 2330-2338
-
-
Willis, A.1
Jung, E.J.2
Wakefield, T.3
Chen, X.4
-
19
-
-
80053022230
-
Li-Fraumeni syndrome
-
Malkin, D. Li-Fraumeni syndrome. Genes Cancer 2, 475-484 (2011).
-
(2011)
Genes Cancer
, vol.2
, pp. 475-484
-
-
Malkin, D.1
-
20
-
-
84902671592
-
Heterogeneity of Li-Fraumeni syndrome links to unequal gain-of-function effects of p53 mutations
-
Xu, J. et al. Heterogeneity of Li-Fraumeni syndrome links to unequal gain-of-function effects of p53 mutations. Sci. Rep. 4, 4223 (2014).
-
(2014)
Sci. Rep.
, vol.4
, pp. 4223
-
-
Xu, J.1
-
21
-
-
81255175501
-
High-throughput droplet digital PCR system for absolute quantitation of DNA copy number
-
Hindson, B. J. et al. High-throughput droplet digital PCR system for absolute quantitation of DNA copy number. Anal. Chem. 83, 8604-8610 (2011).
-
(2011)
Anal. Chem.
, vol.83
, pp. 8604-8610
-
-
Hindson, B.J.1
-
22
-
-
69349094006
-
A p53-mediated DNA damage response limits reprogramming to ensure iPS cell genomic integrity
-
Marión, R. M. et al. A p53-mediated DNA damage response limits reprogramming to ensure iPS cell genomic integrity. Nature 460, 1149-1153 (2009).
-
(2009)
Nature
, vol.460
, pp. 1149-1153
-
-
Marión, R.M.1
-
23
-
-
54949136146
-
Two supporting factors greatly improve the efficiency of human iPSC generation
-
Zhao, Y. et al. Two supporting factors greatly improve the efficiency of human iPSC generation. Cell Stem Cell 3, 475-479 (2008).
-
(2008)
Cell Stem Cell
, vol.3
, pp. 475-479
-
-
Zhao, Y.1
-
24
-
-
85019171907
-
Spontaneous single-copy loss of TP53 in human embryonic stem cells markedly increases cell proliferation and survival
-
Amir, H. et al. Spontaneous single-copy loss of TP53 in human embryonic stem cells markedly increases cell proliferation and survival. Stem Cells (2016).
-
(2016)
Stem Cells
-
-
Amir, H.1
-
25
-
-
84902144564
-
Human intestinal tissue with adult stem cell properties derived from pluripotent stem cells
-
Forster, R. et al. Human intestinal tissue with adult stem cell properties derived from pluripotent stem cells. Stem Cell Rep. 2, 838-852 (2014).
-
(2014)
Stem Cell Rep.
, vol.2
, pp. 838-852
-
-
Forster, R.1
-
26
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
Rada-Iglesias, A. et al. A unique chromatin signature uncovers early developmental enhancers in humans. Nature 470, 279-283 (2011).
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
-
27
-
-
84873702810
-
Dynamic chromatin remodeling mediated by polycomb proteins orchestrates pancreatic differentiation of human embryonic stem cells
-
Xie, R. et al. Dynamic chromatin remodeling mediated by polycomb proteins orchestrates pancreatic differentiation of human embryonic stem cells. Cell Stem Cell 12, 224-237 (2013).
-
(2013)
Cell Stem Cell
, vol.12
, pp. 224-237
-
-
Xie, R.1
-
28
-
-
84965092064
-
RIKEN suspends first clinical trial involving induced pluripotent stem cells
-
Garber, K. RIKEN suspends first clinical trial involving induced pluripotent stem cells. Nat. Biotechnol. 33, 890-891 (2015).
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 890-891
-
-
Garber, K.1
-
29
-
-
78650971216
-
Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture
-
Laurent, L. C. Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture. Cell Stem Cell 8, 106-118 (2011).
-
(2011)
Cell Stem Cell
, vol.8
, pp. 106-118
-
-
Laurent, L.C.1
-
30
-
-
85019182845
-
Culturing human pluripotent stem cells from diverse culture histories
-
Merkle, F. T & Eggan, K. Culturing human pluripotent stem cells from diverse culture histories. Protoc. Exch. http://dx.doi.org/10.1038/protex.2017.087 (2017).
-
Protoc. Exch.
, vol.2017
-
-
Merkle, F.T.1
Eggan, K.2
-
31
-
-
32344438401
-
Derivation of human embryonic stem cells in defined conditions
-
Ludwig, T. E. et al. Derivation of human embryonic stem cells in defined conditions. Nat. Biotechnol. 24, 185-187 (2006).
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 185-187
-
-
Ludwig, T.E.1
-
32
-
-
79955611823
-
Chemically defined conditions for human iPSC derivation and culture
-
Chen, G. et al. Chemically defined conditions for human iPSC derivation and culture. Nat. Methods 8, 424-429 (2011).
-
(2011)
Nat. Methods
, vol.8
, pp. 424-429
-
-
Chen, G.1
-
33
-
-
84929276488
-
Efficient CRISPR-Cas9-mediated generation of knockin human pluripotent stem cells lacking undesired mutations at the targeted locus
-
Merkle, F. T. et al. Efficient CRISPR-Cas9-mediated generation of knockin human pluripotent stem cells lacking undesired mutations at the targeted locus. Cell Reports 11, 875-883 (2015).
-
(2015)
Cell Reports
, vol.11
, pp. 875-883
-
-
Merkle, F.T.1
-
34
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo, M. A. et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 43, 491-498 (2011).
-
(2011)
Nat. Genet.
, vol.43
, pp. 491-498
-
-
DePristo, M.A.1
-
35
-
-
84868490540
-
Detecting and estimating contamination of human DNA samples in sequencing and array-based genotype data
-
Jun, G. et al. Detecting and estimating contamination of human DNA samples in sequencing and array-based genotype data. Am. J. Hum. Genet. 91, 839-848 (2012).
-
(2012)
Am. J. Hum. Genet.
, vol.91
, pp. 839-848
-
-
Jun, G.1
-
36
-
-
35948984173
-
PennCNV: An integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data
-
Wang, K. et al. PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data. Genome Res. 17, 1665-1674 (2007).
-
(2007)
Genome Res.
, vol.17
, pp. 1665-1674
-
-
Wang, K.1
-
39
-
-
42249087308
-
The complete genome of an individual by massively parallel DNA sequencing
-
Wheeler, D. A. et al. The complete genome of an individual by massively parallel DNA sequencing. Nature 452, 872-876 (2008).
-
(2008)
Nature
, vol.452
, pp. 872-876
-
-
Wheeler, D.A.1
-
40
-
-
84876996918
-
TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
Kim, D. et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14, R36 (2013).
-
(2013)
Genome Biol.
, vol.14
, pp. R36
-
-
Kim, D.1
-
41
-
-
0035173378
-
DbSNP: The NCBI database of genetic variation
-
Sherry, S. T. et al. dbSNP: the NCBI database of genetic variation. Nucleic Acids Res. 29, 308-311 (2001).
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 308-311
-
-
Sherry, S.T.1
-
42
-
-
78651271733
-
Integrative genomics viewer
-
Robinson, J. T. et al. Integrative genomics viewer. Nat. Biotechnol. 29, 24-26 (2011).
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
-
43
-
-
77955895425
-
-
Kent, W. J., Zweig, A. S., Barber, G., Hinrichs, A. S. & Karolchik, D. BigWig and BigBed: enabling browsing of large distributed datasets. 26, 2204-2207 (2010).
-
(2010)
BigWig and BigBed: Enabling Browsing of Large Distributed Datasets
, vol.26
, pp. 2204-2207
-
-
Kent, W.J.1
Zweig, A.S.2
Barber, G.3
Hinrichs, A.S.4
Karolchik, D.5
|