Bayesian reconstruction of transmission within outbreaks using genomic variants

PLoS Computational Biology

Volumn 14, Issue 4, 2018, Pages

  De Maio, Nicola ^a   Worby, Colin J ^b   Wilson, Daniel J ^a,c   Stoesser, Nicole ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b PRINCETON UNIVERSITY   (United States)

^c UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BAYESIAN NETWORKS; DISEASE CONTROL; GENES; GENOME; OPEN SOURCE SOFTWARE; OPEN SYSTEMS; PATHOGENS;

BAYESIAN; BAYESIAN RECONSTRUCTION; GENOME SEQUENCING; GENOMICS; INFECTIOUS DISEASE; NUCLEOTIDE BASIS; PATHOGEN POPULATIONS; POTENTIAL SOURCES; REALISTIC MODEL; SEQUENCING ERRORS;

POPULATION STATISTICS;

ACCURACY; ARTICLE; BAYES THEOREM; BAYESIAN EPIDEMIOLOGICAL TRANSMISSION INFERENCE FROM POLYMORPHISM; BAYESIAN LEARNING; CALIBRATION; COMPUTER SIMULATION; DISEASE TRANSMISSION; EBOLA HEMORRHAGIC FEVER; EPIDEMIOLOGICAL DATA; ERROR; EVOLUTION; GENETIC POLYMORPHISM; GENETIC VARIABILITY; HAPLOTYPE; HOST EVOLUTION; HOST PATHOGEN INTERACTION; INFECTIOUS AGENT; NONHUMAN; PHYLOGENETIC TREE; POPULATION DYNAMICS; SEQUENCING ERROR; SIERRA LEONE; VIRUS TRANSMISSION; WHOLE GENOME SEQUENCING; BIOLOGICAL MODEL; BIOLOGY; COMMUNICABLE DISEASE; EPIDEMIC; GENETIC VARIATION; GENETICS; HUMAN; MOLECULAR EVOLUTION; SOFTWARE; STATISTICS AND NUMERICAL DATA; TRANSMISSION;

BAYES THEOREM; COMMUNICABLE DISEASES; COMPUTATIONAL BIOLOGY; COMPUTER SIMULATION; DISEASE OUTBREAKS; EVOLUTION, MOLECULAR; GENETIC VARIATION; HEMORRHAGIC FEVER, EBOLA; HOST-PATHOGEN INTERACTIONS; HUMANS; MODELS, GENETIC; SIERRA LEONE; SOFTWARE;

EID: 85046341170     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1006117     Document Type: Article

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