Within-Host Bacterial Diversity Hinders Accurate Reconstruction of Transmission Networks from Genomic Distance Data

PLoS Computational Biology

Volumn 10, Issue 3, 2014, Pages

  Worby, Colin J ^a   Lipsitch, Marc ^a   Hanage, William P ^a  

^a HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TREES (MATHEMATICS); UNCERTAINTY ANALYSIS;

BACTERIAL DIVERSITY; DISTANCE DATUM; GENOME SEQUENCE DATA; GENOMIC DATA; GENOMIC DISTANCE; SEQUENCE DATA; TRANSMISSION DYNAMICS; TRANSMISSION ROUTE; UNCERTAINTY; WHOLE GENOME SEQUENCES;

GENES;

ARTICLE; BACTERIAL GENETICS; BACTERIAL TRANSMISSION; ENTROPY; GENE SEQUENCE; GENETIC VARIABILITY; GENOTYPE; MICROBIAL DIVERSITY; NONHUMAN; PHYLOGENETIC TREE; RECEIVER OPERATING CHARACTERISTIC;

AREA UNDER CURVE; BACTERIA; BACTERIAL INFECTIONS; COMPUTATIONAL BIOLOGY; COMPUTER SIMULATION; DISEASE OUTBREAKS; ENTROPY; EPIDEMICS; GENETIC VARIATION; GENOMICS; GENOTYPE; HUMANS; MUTATION; PHYLOGENY; POLYMORPHISM, SINGLE NUCLEOTIDE; POPULATION DENSITY; POPULATION DYNAMICS; ROC CURVE; STAPHYLOCOCCUS AUREUS; STOCHASTIC PROCESSES;

EID: 84897370764     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1003549     Document Type: Article

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