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Volumn 360, Issue 1459, 2005, Pages 1387-1393

Approximating the coalescent with recombination

Author keywords

Coalescent; Genealogy; Linkage disequilibrium; Recombination

Indexed keywords

RECOMBINATION;

EID: 31344468046     PISSN: 09628436     EISSN: None     Source Type: Journal    
DOI: 10.1098/rstb.2005.1673     Document Type: Article
Times cited : (266)

References (29)
  • 1
    • 0036964474 scopus 로고    scopus 로고
    • Approximate Bayesian computation in population genetics
    • Beaumont, M. A., Zhang, W. & Balding, D. J. 2002 Approximate Bayesian computation in population genetics. Genetics 162, 2025-2035.
    • (2002) Genetics , vol.162 , pp. 2025-2035
    • Beaumont, M.A.1    Zhang, W.2    Balding, D.J.3
  • 3
    • 0035675042 scopus 로고    scopus 로고
    • Estimating recombination rates from population genetic data
    • Fearnhead, P. & Donnelly, P. J. 2001 Estimating recombination rates from population genetic data. Genetics 159, 1299-1318.
    • (2001) Genetics , vol.159 , pp. 1299-1318
    • Fearnhead, P.1    Donnelly, P.J.2
  • 4
    • 0036433716 scopus 로고    scopus 로고
    • Approximate likelihood methods for estimating local recombination rates
    • Fearnhead, P. & Donnelly, P. 2002 Approximate likelihood methods for estimating local recombination rates. J. R. Stat. Soc. B 64, 1-24.
    • (2002) J. R. Stat. Soc. B , vol.64 , pp. 1-24
    • Fearnhead, P.1    Donnelly, P.2
  • 5
    • 4644362514 scopus 로고    scopus 로고
    • Application of coalescent methods to reveal fine-scale rate variation and recombination hotspots
    • Fearnhead, P., Harding, R. M., Schneider, J. A., Myers, S. & Donnelly, P. 2004 Application of coalescent methods to reveal fine-scale rate variation and recombination hotspots. Genetics 167, 2067-2081.
    • (2004) Genetics , vol.167 , pp. 2067-2081
    • Fearnhead, P.1    Harding, R.M.2    Schneider, J.A.3    Myers, S.4    Donnelly, P.5
  • 6
    • 0033117748 scopus 로고    scopus 로고
    • The time to the ancestor along sequences with recombination
    • Griffiths, R. C. 1999 The time to the ancestor along sequences with recombination. Theor. Popul. Biol. 55, 137-144.
    • (1999) Theor. Popul. Biol. , vol.55 , pp. 137-144
    • Griffiths, R.C.1
  • 7
    • 0002987555 scopus 로고    scopus 로고
    • An ancestral recombination graph
    • ed. P. J. Donnelly & S. Tavaré, Berlin: Springer
    • Griffiths, R. C. & Marjoram, P. 1996 An ancestral recombination graph. In IMA volume on mathematical population genetics (ed. P. J. Donnelly & S. Tavaré), pp. 257-270. Berlin: Springer.
    • (1996) IMA Volume on Mathematical Population Genetics , pp. 257-270
    • Griffiths, R.C.1    Marjoram, P.2
  • 8
    • 0016565853 scopus 로고
    • Linkage disequilibrium among multiple neutral alleles produced by mutation in a finite population
    • Hill, W. G. 1975 Linkage disequilibrium among multiple neutral alleles produced by mutation in a finite population. Theor. Popul. Biol. 8, 117-126.
    • (1975) Theor. Popul. Biol. , vol.8 , pp. 117-126
    • Hill, W.G.1
  • 9
    • 33646226097 scopus 로고
    • Linkage disequilibrium in finite populations
    • Hill, W. G. & Robertson, A. R. 1968 Linkage disequilibrium in finite populations. Theor. Appl. Genet. 38, 226-231.
    • (1968) Theor. Appl. Genet. , vol.38 , pp. 226-231
    • Hill, W.G.1    Robertson, A.R.2
  • 10
    • 0020744702 scopus 로고
    • Properties of a neutral allele model with intragenic recombination
    • Hudson, R. R. 1983 Properties of a neutral allele model with intragenic recombination. Theor. Popul. Biol. 23, 183-201.
    • (1983) Theor. Popul. Biol. , vol.23 , pp. 183-201
    • Hudson, R.R.1
  • 11
    • 0023612034 scopus 로고
    • Estimating the recombination parameter of a finite population model without selection
    • Hudson, R. R. 1987 Estimating the recombination parameter of a finite population model without selection. Genet. Res. 50, 245-250.
    • (1987) Genet. Res. , vol.50 , pp. 245-250
    • Hudson, R.R.1
  • 12
    • 0001935493 scopus 로고
    • Gene genealogies and the coalescent process
    • ed. D. Futuyama & J. Antonovics, New York: Oxford University Press
    • Hudson, R. R. 1990 Gene genealogies and the coalescent process. In Oxford surveys in evolutionary biology (ed. D. Futuyama & J. Antonovics), vol. 7, pp. 1-44. New York: Oxford University Press.
    • (1990) Oxford Surveys in Evolutionary Biology , vol.7 , pp. 1-44
    • Hudson, R.R.1
  • 13
    • 0035692320 scopus 로고    scopus 로고
    • Two-locus sampling distributions and their application
    • Hudson, R. R. 2001 Two-locus sampling distributions and their application. Genetics 159, 1805-1817.
    • (2001) Genetics , vol.159 , pp. 1805-1817
    • Hudson, R.R.1
  • 14
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • Hudson, R. R. & Kaplan, N. 1985 Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111, 147-164.
    • (1985) Genetics , vol.111 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.2
  • 15
    • 0033832928 scopus 로고    scopus 로고
    • Usefulness of single nucleotide polymorphism data for estimating population parameters
    • Kuhner, M. K., Beerli, P., Yamato, J. & Felsenstein, J. 2000 Usefulness of single nucleotide polymorphism data for estimating population parameters. Genetics 156, 439-447.
    • (2000) Genetics , vol.156 , pp. 439-447
    • Kuhner, M.K.1    Beerli, P.2    Yamato, J.3    Felsenstein, J.4
  • 16
    • 0347361674 scopus 로고    scopus 로고
    • Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data
    • Li, N. & Stephens, M. 2003 Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics 165, 2213-2233.
    • (2003) Genetics , vol.165 , pp. 2213-2233
    • Li, N.1    Stephens, M.2
  • 17
    • 0036811711 scopus 로고    scopus 로고
    • A genealogical interpretation of linkage disequilibrium
    • McVean, G. A. T. 2002 A genealogical interpretation of linkage disequilibrium. Genetics 162, 987-991.
    • (2002) Genetics , vol.162 , pp. 987-991
    • McVean, G.A.T.1
  • 18
    • 0036199914 scopus 로고    scopus 로고
    • A coalescent-based method for detecting and estimating recombination rates from gene sequences
    • McVean, G., Awadalla, P. & Fearnhead, P. 2002 A coalescent-based method for detecting and estimating recombination rates from gene sequences. Genetics 160, 1231-1241.
    • (2002) Genetics , vol.160 , pp. 1231-1241
    • McVean, G.1    Awadalla, P.2    Fearnhead, P.3
  • 19
    • 2142773942 scopus 로고    scopus 로고
    • The fine-scale structure of recombination rate variation in the human genome
    • McVean, G. A. T., Myers, S., Hunt, S., Deloukas, P., Bentley, D. & Donnelly, P. 2004 The fine-scale structure of recombination rate variation in the human genome. Science 304, 581-584.
    • (2004) Science , vol.304 , pp. 581-584
    • McVean, G.A.T.1    Myers, S.2    Hunt, S.3    Deloukas, P.4    Bentley, D.5    Donnelly, P.6
  • 20
    • 0037279717 scopus 로고    scopus 로고
    • Bounds on the minimum number of recombination events in a sample history
    • Myers, S. R. & Griffiths, R. C. 2003 Bounds on the minimum number of recombination events in a sample history. Genetics 163, 375-394.
    • (2003) Genetics , vol.163 , pp. 375-394
    • Myers, S.R.1    Griffiths, R.C.2
  • 21
    • 0033965571 scopus 로고    scopus 로고
    • Estimation of population parameters and recombination rates from single nucleotide polymorphisms
    • Nielsen, R. 2000 Estimation of population parameters and recombination rates from single nucleotide polymorphisms. Genetics 154, 931-942.
    • (2000) Genetics , vol.154 , pp. 931-942
    • Nielsen, R.1
  • 22
    • 0015100342 scopus 로고
    • Linkage disequilibrium between two segregating nucleotide sites under the steady flux of mutations in a finite population
    • Ohta, T. & Kimura, M. 1971 Linkage disequilibrium between two segregating nucleotide sites under the steady flux of mutations in a finite population. Genetics 68, 571-580.
    • (1971) Genetics , vol.68 , pp. 571-580
    • Ohta, T.1    Kimura, M.2
  • 23
    • 0029861446 scopus 로고    scopus 로고
    • Optimal sequencing strategies for surveying molecular genetic diversity
    • Pluzhnikov, A. & Donnelly, P. 1996 Optimal sequencing strategies for surveying molecular genetic diversity. Genetics 144, 1247-1262.
    • (1996) Genetics , vol.144 , pp. 1247-1262
    • Pluzhnikov, A.1    Donnelly, P.2
  • 24
    • 0344441428 scopus 로고    scopus 로고
    • Estimating recombination rates from population genetic data
    • Stumpf, M. P. H. & McVean, G. A. T. 2003 Estimating recombination rates from population genetic data. Nat. Rev. Genet. 4, 959-968.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 959-968
    • Stumpf, M.P.H.1    McVean, G.A.T.2
  • 25
    • 0030954044 scopus 로고    scopus 로고
    • Using the variance of pairwise differences to estimate the recombination rate
    • Wakeley, J. 1997 Using the variance of pairwise differences to estimate the recombination rate. Genet. Res. 69, 45-48.
    • (1997) Genet. Res. , vol.69 , pp. 45-48
    • Wakeley, J.1
  • 26
    • 0033955443 scopus 로고    scopus 로고
    • A comparison of estimators of the population recombination rate
    • Wall, J. D. 2000 A comparison of estimators of the population recombination rate. Mol. Biol. Evol. 17, 156-163.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 156-163
    • Wall, J.D.1
  • 27
    • 0022712387 scopus 로고
    • Nonuniform recombination within the human β-globin gene cluster
    • Weir, B. S. & Hill, W. G. 1986 Nonuniform recombination within the human β-globin gene cluster. Am. J. Hum. Genet. 38, 776-778.
    • (1986) Am. J. Hum. Genet. , vol.38 , pp. 776-778
    • Weir, B.S.1    Hill, W.G.2
  • 28
    • 0033150745 scopus 로고    scopus 로고
    • Recombination as a point process along sequences
    • Wiuf, C. & Hein, J. 1999 Recombination as a point process along sequences. Theor. Popul. Biol. 55, 248-259.
    • (1999) Theor. Popul. Biol. , vol.55 , pp. 248-259
    • Wiuf, C.1    Hein, J.2
  • 29
    • 0034815265 scopus 로고    scopus 로고
    • A simulation study of the reliability of recombination detection methods
    • Wiuf, C., Christensen, T. & Hein, J. 2001 A simulation study of the reliability of recombination detection methods. Mol. Biol. Evol. 18, 1929-1939.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1929-1939
    • Wiuf, C.1    Christensen, T.2    Hein, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.