Reversible polymorphism-aware phylogenetic models and their application to tree inference

Journal of Theoretical Biology

Volumn 407, Issue , 2016, Pages 362-370

  Schrempf, Dominik ^a,b   Minh, Bui Quang ^c   De Maio, Nicola ^d,e   von Haeseler, Arndt ^c   Kosiol, Carolin ^a  

^a Institute of Populationsgenetik   (Austria)

^b Vienna Graduate School of Economics   (Austria)

^c MEDICAL UNIVERSITY OF VIENNA   (Austria)

^d UNIVERSITY OF OXFORD   (United Kingdom)

^e UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

Incomplete lineage sorting; Phylogenetics; Reversible polymorphism aware phylogenetic model; Species tree; Substitution model

Indexed keywords

ACCURACY ASSESSMENT; GENOME; MAXIMUM LIKELIHOOD ANALYSIS; MODEL; PHYLOGENETICS; POLYMORPHISM; SPECIATION (BIOLOGY);

ARTICLE; CONTROLLED STUDY; DNA SEQUENCE; GENETIC DRIFT; GENETIC MODEL; HUMAN; MEASUREMENT ACCURACY; MOLECULAR PHYLOGENY; MUTATION RATE; NONHUMAN; NUCLEIC ACID BASE SUBSTITUTION; PRIORITY JOURNAL; REVERSIBLE POLYMORPHISM AWARE PHYLOGENETIC MODEL; SAMPLE SIZE; SIMULATION; ANIMAL; BIOLOGICAL MODEL; COMPUTER SIMULATION; DIFFUSION; GENETIC POLYMORPHISM; GENETICS; HOMINID; PHYLOGENY; SPECIES DIFFERENCE;

HOMINIDAE;

ANIMALS; COMPUTER SIMULATION; DIFFUSION; HOMINIDAE; MODELS, GENETIC; PHYLOGENY; POLYMORPHISM, GENETIC; SPECIES SPECIFICITY;

EID: 84982796242     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2016.07.042     Document Type: Article

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