-
1
-
-
84875508572
-
-
European Centre for Disease Prevention and Control, (accessed Oct 13, 2013).
-
Tuberculosis surveillance and monitoring in Europe 2012 European Centre for Disease Prevention and Control, (accessed Oct 13, 2013). http://ecdc.europa.eu/en/publications/Publications/1203-Annual-TB-Report.pdf.
-
Tuberculosis surveillance and monitoring in Europe 2012
-
-
-
2
-
-
84885794298
-
-
Public Health England, (accessed Oct 13, 2013).
-
Tuberculosis in the UK: 2013 report Public Health England, (accessed Oct 13, 2013). http://www.hpa.org.uk/webc/HPAwebFile/HPAweb_C/1317139689583.
-
Tuberculosis in the UK: 2013 report
-
-
-
3
-
-
84859006234
-
Tuberculosis in the UK - time to regain control
-
Abubakar I, Lipman M, Anderson C, Davies P, Zumla A Tuberculosis in the UK - time to regain control. BMJ 2011, 343:293-296.
-
(2011)
BMJ
, vol.343
, pp. 293-296
-
-
Abubakar, I.1
Lipman, M.2
Anderson, C.3
Davies, P.4
Zumla, A.5
-
4
-
-
84872619639
-
-
Public Health England, (accessed Aug 24, 2013).
-
Tuberculosis in the UK: 2012 report Public Health England, (accessed Aug 24, 2013). http://www.hpa.org.uk/webw/HPAweb&HPAwebStandard/HPAweb_C/1317134916916.
-
Tuberculosis in the UK: 2012 report
-
-
-
5
-
-
84872513471
-
Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study
-
Walker TM, Ip CL, Harrell RH, et al. Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study. Lancet Infect Dis 2013, 13:137-146.
-
(2013)
Lancet Infect Dis
, vol.13
, pp. 137-146
-
-
Walker, T.M.1
Ip, C.L.2
Harrell, R.H.3
-
6
-
-
79951995822
-
Whole-genome sequencing and social-network analysis of a tuberculosis outbreak
-
Gardy JL, Johnston JC, Sui SJH, et al. Whole-genome sequencing and social-network analysis of a tuberculosis outbreak. N Engl J Med 2011, 364:730-739.
-
(2011)
N Engl J Med
, vol.364
, pp. 730-739
-
-
Gardy, J.L.1
Johnston, J.C.2
Sui, S.J.H.3
-
7
-
-
84874469388
-
Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study
-
Roetzer A, Diel R, Kohl TA, et al. Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study. Plos Med 2013, 10:e1001387.
-
(2013)
Plos Med
, vol.10
-
-
Roetzer, A.1
Diel, R.2
Kohl, T.A.3
-
8
-
-
84863401593
-
Evidence for a national problem: continued rise in tuberculosis case numbers in urban areas outside London
-
Kruijshaar ME, Abubakar I, Dedicoat M, et al. Evidence for a national problem: continued rise in tuberculosis case numbers in urban areas outside London. Thorax 2012, 67:275-277.
-
(2012)
Thorax
, vol.67
, pp. 275-277
-
-
Kruijshaar, M.E.1
Abubakar, I.2
Dedicoat, M.3
-
9
-
-
0025952233
-
Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis
-
van Soolingen D, Hermans PW, de Haas PE, Soll DR, van Embden JD Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis. J Clin Microbiol 1991, 29:2578-2586.
-
(1991)
J Clin Microbiol
, vol.29
, pp. 2578-2586
-
-
van Soolingen, D.1
Hermans, P.W.2
de Haas, P.E.3
Soll, D.R.4
van Embden, J.D.5
-
10
-
-
79956307251
-
Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads
-
Lunter G, Goodson M Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res 2011, 21:936-939.
-
(2011)
Genome Res
, vol.21
, pp. 936-939
-
-
Lunter, G.1
Goodson, M.2
-
11
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li H, Handsaker B, Wysoker A, et al. The sequence alignment/map format and SAMtools. Bioinformatics 2009, 25:2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
-
12
-
-
84924262962
-
-
National Collaborating Centre for Chronic Conditions and the Centre for Clinical Practice at the National Institute for Health and Clinical Excellence (UK), (accessed Oct 13, 2013).
-
Clinical guideline 117. Tuberculosis: clinical diagnosis and management of tuberculosis, and measures for Its prevention and control. London, 2011 National Collaborating Centre for Chronic Conditions and the Centre for Clinical Practice at the National Institute for Health and Clinical Excellence (UK), (accessed Oct 13, 2013). http://www.nice.org.uk/nicemedia/live/13422/53638/53638.pdf.
-
Clinical guideline 117. Tuberculosis: clinical diagnosis and management of tuberculosis, and measures for Its prevention and control. London, 2011
-
-
-
14
-
-
84870512293
-
-
WHO, (accessed Oct 13, 2013).
-
Global tuberculosis report 2012 WHO, (accessed Oct 13, 2013). http://apps.who.int/iris/bitstream/10665/75938/1/9789241564502_eng.pdf.
-
Global tuberculosis report 2012
-
-
-
15
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon S, Dufayard J-F, Lefort V, Anisimova M, Hordijk W, Gascuel O New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 2010, 59:307-321.
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.-F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
16
-
-
68949116029
-
A systematic review and meta-analysis of molecular epidemiological studies of tuberculosis: development of a new tool to aid interpretation
-
Houben RMGJ, Glynn JR A systematic review and meta-analysis of molecular epidemiological studies of tuberculosis: development of a new tool to aid interpretation. Trop Med Int Health 2009, 14:892-909.
-
(2009)
Trop Med Int Health
, vol.14
, pp. 892-909
-
-
Houben, R.M.G.J.1
Glynn, J.R.2
-
17
-
-
42449089412
-
Three-year population-based evaluation of standardized mycobacterial interspersed repetitive-unit-variable-number tandem-repeat typing of Mycobacterium tuberculosis
-
Allix-Beguec C, Fauville-Dufaux M, Supply P Three-year population-based evaluation of standardized mycobacterial interspersed repetitive-unit-variable-number tandem-repeat typing of Mycobacterium tuberculosis. J Clin Microbiol 2008, 46:1398-1406.
-
(2008)
J Clin Microbiol
, vol.46
, pp. 1398-1406
-
-
Allix-Beguec, C.1
Fauville-Dufaux, M.2
Supply, P.3
-
18
-
-
82455220418
-
Evaluation of Mycobacterium tuberculosis typing methods in a 4-year study in Schleswig-Holstein, Northern Germany
-
Roetzer A, Schuback S, Diel R, et al. Evaluation of Mycobacterium tuberculosis typing methods in a 4-year study in Schleswig-Holstein, Northern Germany. J Clin Microbiol 2011, 49:4173-4178.
-
(2011)
J Clin Microbiol
, vol.49
, pp. 4173-4178
-
-
Roetzer, A.1
Schuback, S.2
Diel, R.3
-
19
-
-
84874261750
-
Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data
-
Bryant JM, Schurch AC, van Deutekom H Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data. BMC Infect Dis 2013, 13:110.
-
(2013)
BMC Infect Dis
, vol.13
, pp. 110
-
-
Bryant, J.M.1
Schurch, A.C.2
van Deutekom, H.3
-
20
-
-
84891347402
-
Whole genome sequencing analysis of intrapatient microevolution in Mycobacterium tuberculosis: potential impact on the inference of tuberculosis transmission
-
Pérez-Lago L, Comas I, Navarro Y, et al. Whole genome sequencing analysis of intrapatient microevolution in Mycobacterium tuberculosis: potential impact on the inference of tuberculosis transmission. J Infect Dis 2014, 209:98-108.
-
(2014)
J Infect Dis
, vol.209
, pp. 98-108
-
-
Pérez-Lago, L.1
Comas, I.2
Navarro, Y.3
-
21
-
-
84888860825
-
Whole-genome sequencing to establish relapse or re-infection with Mycobacterium tuberculosis: a retrospective observational study
-
Bryant JM, Harris SR, Parkhill J, et al. Whole-genome sequencing to establish relapse or re-infection with Mycobacterium tuberculosis: a retrospective observational study. Lancet Respir Med 2013, 1:786-792.
-
(2013)
Lancet Respir Med
, vol.1
, pp. 786-792
-
-
Bryant, J.M.1
Harris, S.R.2
Parkhill, J.3
-
22
-
-
0028302048
-
The epidemiology of tuberculosis in San Francisco. A population-based study using conventional and molecular methods
-
Small PM, Hopewell PC, Singh SP, et al. The epidemiology of tuberculosis in San Francisco. A population-based study using conventional and molecular methods. N Engl J Med 1994, 330:1703-1709.
-
(1994)
N Engl J Med
, vol.330
, pp. 1703-1709
-
-
Small, P.M.1
Hopewell, P.C.2
Singh, S.P.3
-
23
-
-
80051937133
-
The incubation period distribution of tuberculosis estimated with a molecular epidemiological approach
-
Borgdorff MW, Sebek M, Geskus RB, Kremer K, Kalisvaart N, van Soolingen D The incubation period distribution of tuberculosis estimated with a molecular epidemiological approach. Int J Epidemiol 2011, 40:964-970.
-
(2011)
Int J Epidemiol
, vol.40
, pp. 964-970
-
-
Borgdorff, M.W.1
Sebek, M.2
Geskus, R.B.3
Kremer, K.4
Kalisvaart, N.5
van Soolingen, D.6
-
24
-
-
79955674413
-
Tuberculosis screening of migrants to low-burden nations: insights from evaluation of UK practice
-
Pareek M, Abubakar I, White PJ, Garnett GP, Lalvani A Tuberculosis screening of migrants to low-burden nations: insights from evaluation of UK practice. Eur Respirat J 2011, 37:1175-1182.
-
(2011)
Eur Respirat J
, vol.37
, pp. 1175-1182
-
-
Pareek, M.1
Abubakar, I.2
White, P.J.3
Garnett, G.P.4
Lalvani, A.5
-
25
-
-
46249092205
-
Advanced survey of tuberculosis transmission in a complex socioepidemiologic scenario with a high proportion of cases in immigrants
-
Martínez-Lirola M, Alonso-Rodriguez N, Sánchez L, et al. Advanced survey of tuberculosis transmission in a complex socioepidemiologic scenario with a high proportion of cases in immigrants. CID 2008, 47:8-14.
-
(2008)
CID
, vol.47
, pp. 8-14
-
-
Martínez-Lirola, M.1
Alonso-Rodriguez, N.2
Sánchez, L.3
|